Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48495 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47064 * 300.00592 * 3 2 1 6 6 H 1.48507 * 109.46743 * 60.00429 * 3 2 1 7 7 C 1.37878 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00150 * 173.55324 * 7 2 1 9 9 C 1.50704 * 119.99692 * 353.54768 * 7 2 1 10 10 C 1.53004 * 115.54800 * 85.40961 * 9 7 2 11 11 N 1.46505 * 109.46861 * 65.13856 * 10 9 7 12 12 C 1.34781 * 119.99845 * 178.27938 * 11 10 9 13 13 O 1.21588 * 119.99952 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00112 * 180.02562 * 12 11 10 15 15 O 1.41594 * 120.00227 * 180.02562 * 14 12 11 16 16 C 1.42897 * 114.00440 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.48106 * 329.97939 * 16 15 14 18 18 C 1.53088 * 109.48366 * 209.94456 * 16 15 14 19 19 C 1.53179 * 109.16436 * 182.40581 * 18 16 15 20 20 C 1.53177 * 109.03451 * 56.98059 * 19 18 16 21 21 C 1.53091 * 109.16434 * 303.02001 * 20 19 18 22 22 O 1.42902 * 109.47971 * 89.99733 * 16 15 14 23 23 C 1.52998 * 117.50018 * 231.07602 * 9 7 2 24 24 C 1.52993 * 117.50176 * 299.74033 * 9 7 2 25 25 H 0.97003 * 119.99605 * 5.05143 * 1 2 3 26 26 H 1.08997 * 109.47241 * 305.14076 * 10 9 7 27 27 H 1.08996 * 109.47039 * 185.13395 * 10 9 7 28 28 H 0.97004 * 120.00425 * 358.28320 * 11 10 9 29 29 H 0.97004 * 119.99582 * 0.02562 * 14 12 11 30 30 H 1.09003 * 109.52115 * 302.31398 * 18 16 15 31 31 H 1.09000 * 109.52620 * 62.49898 * 18 16 15 32 32 H 1.08992 * 109.54186 * 297.11175 * 19 18 16 33 33 H 1.09003 * 109.61467 * 176.88776 * 19 18 16 34 34 H 1.09007 * 109.52197 * 183.11422 * 20 19 18 35 35 H 1.09002 * 109.57778 * 62.95547 * 20 19 18 36 36 H 1.09009 * 109.47592 * 297.62656 * 21 20 19 37 37 H 1.08994 * 109.48321 * 177.59486 * 21 20 19 38 38 H 1.08997 * 117.50181 * 215.00479 * 23 9 7 39 39 H 1.09007 * 117.49520 * 0.02782 * 23 9 7 40 40 H 1.09000 * 117.49593 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.49926 * 145.00089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1456 10 6 0.7020 -3.0860 -1.1516 11 7 1.8111 -3.4584 -2.0334 12 6 1.5598 -4.0348 -3.2256 13 8 0.4127 -4.2452 -3.5694 14 7 2.5801 -4.3778 -4.0366 15 8 2.3162 -4.9828 -5.2893 16 6 3.4894 -5.2934 -6.0436 17 1 4.2760 -4.5781 -5.8032 18 6 3.1700 -5.2178 -7.5388 19 6 4.4155 -5.6103 -8.3396 20 6 4.8642 -7.0107 -7.9110 21 6 5.1182 -7.0170 -6.4013 22 8 3.9298 -6.6132 -5.7179 23 6 1.7470 -3.4738 1.2151 24 6 0.4417 -2.7016 1.4229 25 1 -0.4850 0.8368 -0.0740 26 1 0.0753 -2.3457 -1.6488 27 1 0.1075 -3.9703 -0.9224 28 1 2.7263 -3.2902 -1.7593 29 1 3.4953 -4.2102 -3.7621 30 1 2.3557 -5.9037 -7.7724 31 1 2.8761 -4.2006 -7.7977 32 1 5.2147 -4.8955 -8.1441 33 1 4.1805 -5.6125 -9.4040 34 1 5.7820 -7.2757 -8.4359 35 1 4.0849 -7.7337 -8.1522 36 1 5.9262 -6.3242 -6.1658 37 1 5.3965 -8.0218 -6.0837 38 1 1.6724 -4.5387 0.9947 39 1 2.6083 -3.1765 1.8134 40 1 0.4449 -1.8966 2.1578 41 1 -0.4915 -3.2585 1.3392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797517831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = -72.781599 kcal Electronic energy + Delta-G solvation = -22487.609575 eV Core-core repulsion = 18983.641745 eV Total energy + Delta-G solvation = -3503.967830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02728 -40.43864 -38.59871 -37.70527 -35.08424 -34.73982 -33.95531 -33.14836 -30.91210 -27.95316 -26.91460 -25.70773 -24.40956 -22.98542 -22.32985 -21.32492 -21.16138 -19.84215 -19.18497 -17.87970 -17.79453 -17.22138 -16.70299 -16.40937 -16.29445 -15.78689 -15.62791 -15.37140 -15.05314 -14.52336 -14.38975 -14.21668 -13.96310 -13.72679 -13.49898 -13.37548 -12.90271 -12.81715 -12.41112 -12.30045 -12.13029 -12.00359 -11.96312 -11.56068 -11.38379 -11.36088 -10.83331 -10.60524 -10.44499 -10.31479 -10.03985 -9.69091 -8.06457 -6.19706 0.48641 1.44033 1.47730 1.56806 2.12518 2.44819 2.48038 2.94200 3.21951 3.49804 3.57843 3.62924 3.72013 3.91426 3.96012 4.14150 4.26758 4.39973 4.57699 4.59126 4.68456 4.73180 4.75723 4.80640 4.96638 4.98029 5.04334 5.04794 5.09847 5.30017 5.30966 5.54643 5.58575 5.61270 5.68688 5.81500 5.90977 6.21047 6.39704 6.87502 7.08400 7.49821 7.59592 9.01285 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.003380 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.899016 B = 8281.405531 C = 8765.148158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.067 0.933 9 C 0.005 3.995 10 C 0.200 3.800 11 N -0.699 5.699 12 C 0.714 3.286 13 O -0.634 6.634 14 N -0.599 5.599 15 O -0.137 6.137 16 C 0.222 3.778 17 H 0.094 0.906 18 C -0.138 4.138 19 C -0.113 4.113 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.427 6.427 23 C -0.175 4.175 24 C -0.158 4.158 25 H 0.258 0.742 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.411 0.589 29 H 0.422 0.578 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.116 -10.887 -13.873 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.004 3.996 10 C 0.076 3.924 11 N -0.357 5.357 12 C 0.415 3.585 13 O -0.515 6.515 14 N -0.307 5.307 15 O -0.140 6.140 16 C 0.126 3.874 17 H 0.111 0.889 18 C -0.177 4.177 19 C -0.150 4.150 20 C -0.196 4.196 21 C -0.015 4.015 22 O -0.349 6.349 23 C -0.212 4.212 24 C -0.196 4.196 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.247 0.753 29 H 0.265 0.735 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.643 -11.116 -14.071 22.532 hybrid contribution 0.783 1.252 0.097 1.480 sum 14.426 -9.864 -13.973 22.375 Atomic orbital electron populations 1.70118 1.07326 1.27247 1.49849 1.25725 0.95438 1.02129 0.94422 0.85623 0.79576 0.80099 0.76993 1.18323 1.21558 1.21270 1.20702 0.93246 0.89389 1.50724 0.91472 1.19049 0.99922 0.94573 0.86023 1.20528 0.86611 0.95524 0.89715 1.44704 1.11671 1.63652 1.15648 1.15618 0.83604 0.78819 0.80478 1.90865 1.21799 1.62904 1.75913 1.45974 1.08507 1.65633 1.10559 1.90638 1.27073 1.78312 1.17957 1.23745 0.87417 0.85310 0.90951 0.88903 1.22128 1.00975 1.04155 0.90470 1.21626 0.95777 0.97113 1.00534 1.22260 1.03552 0.97651 0.96112 1.22868 0.85005 1.01793 0.91879 1.87868 1.45906 1.32859 1.68306 1.23026 0.97409 0.96262 1.04539 1.22444 0.93864 1.01429 1.01880 0.93265 0.95114 0.94591 0.75302 0.73488 0.91188 0.89220 0.89857 0.88947 0.87851 0.91662 0.91205 0.87420 0.89327 0.89300 0.91633 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.17 12.91 21.45 0.28 -50.89 16 2 C 0.02 1.24 5.39 84.65 0.46 1.69 16 3 Si 0.95 41.62 29.55 68.60 2.03 43.65 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.50 -25.13 8.63 25.60 0.22 -24.91 16 8 H 0.07 3.20 7.82 -2.91 -0.02 3.17 16 9 C 0.01 0.24 1.38 -52.93 -0.07 0.17 16 10 C 0.20 9.34 5.50 86.38 0.48 9.81 16 11 N -0.70 -27.53 5.48 -478.52 -2.62 -30.15 16 12 C 0.71 29.70 8.71 179.05 1.56 31.26 16 13 O -0.63 -32.94 16.75 13.36 0.22 -32.71 16 14 N -0.60 -19.32 6.38 -184.75 -1.18 -20.50 16 15 O -0.14 -4.56 11.00 -9.58 -0.11 -4.66 16 16 C 0.22 4.98 3.44 72.01 0.25 5.23 16 17 H 0.09 1.59 7.83 -2.39 -0.02 1.57 16 18 C -0.14 -2.44 5.79 30.68 0.18 -2.26 16 19 C -0.11 -1.18 6.03 30.71 0.19 -1.00 16 20 C -0.16 -1.62 6.14 30.68 0.19 -1.43 16 21 C 0.06 0.80 6.84 72.01 0.49 1.29 16 22 O -0.43 -9.97 10.66 -126.21 -1.35 -11.32 16 23 C -0.18 -6.83 9.96 30.62 0.30 -6.52 16 24 C -0.16 -7.12 9.42 30.62 0.29 -6.83 16 25 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 26 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 28 H 0.41 13.72 8.38 -92.71 -0.78 12.95 16 29 H 0.42 9.86 8.37 -92.71 -0.78 9.09 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.09 3.29 8.14 -2.38 -0.02 3.28 16 40 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -71.91 345.92 1.28 -70.63 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.52 Total: 29.47 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.52 Total: 6.50 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.52 Total: -101.55 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.23 Total: -48.70 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.91 1.28 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797517831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.155 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds