Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99627 * 2 1 4 4 H 1.48494 * 109.47371 * 240.00066 * 3 2 1 5 5 H 1.48493 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46802 * 120.00339 * 3 2 1 7 7 C 1.37869 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 173.55434 * 7 2 1 9 9 C 1.50699 * 120.00082 * 353.55621 * 7 2 1 10 10 C 1.52998 * 115.55410 * 85.40603 * 9 7 2 11 11 N 1.46497 * 109.47109 * 65.14174 * 10 9 7 12 12 C 1.34783 * 119.99857 * 178.29336 * 11 10 9 13 13 O 1.21584 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99675 * 180.02562 * 12 11 10 15 15 O 1.41598 * 119.99940 * 179.72208 * 14 12 11 16 16 C 1.42904 * 114.00519 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47280 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.80821 * 308.62485 * 17 16 15 19 19 C 1.54814 * 110.90662 * 185.00147 * 17 16 15 20 20 C 1.54105 * 104.18640 * 220.92030 * 19 17 16 21 21 O 1.43742 * 107.29598 * 357.97145 * 20 19 17 22 22 C 1.44381 * 106.97573 * 26.50958 * 21 20 19 23 23 C 1.53004 * 117.50148 * 231.07822 * 9 7 2 24 24 C 1.53009 * 117.49737 * 299.73427 * 9 7 2 25 25 H 0.96995 * 120.00276 * 5.05939 * 1 2 3 26 26 H 1.09007 * 109.47010 * 305.14370 * 10 9 7 27 27 H 1.09000 * 109.47234 * 185.14824 * 10 9 7 28 28 H 0.96997 * 120.00190 * 358.28553 * 11 10 9 29 29 H 0.97001 * 120.00430 * 359.97438 * 14 12 11 30 30 H 1.09002 * 109.46964 * 299.99943 * 16 15 14 31 31 H 1.08996 * 109.47008 * 59.99356 * 16 15 14 32 32 H 1.09000 * 110.48410 * 339.59301 * 19 17 16 33 33 H 1.08999 * 110.48935 * 102.24556 * 19 17 16 34 34 H 1.09002 * 109.87657 * 117.39296 * 20 19 17 35 35 H 1.08998 * 109.87978 * 238.39228 * 20 19 17 36 36 H 1.08997 * 110.61778 * 201.44323 * 22 21 20 37 37 H 1.08999 * 110.61939 * 78.44358 * 22 21 20 38 38 H 1.08996 * 117.50308 * 215.00321 * 23 9 7 39 39 H 1.09006 * 117.49492 * 0.02562 * 23 9 7 40 40 H 1.08998 * 117.49739 * 359.97438 * 24 9 7 41 41 H 1.08993 * 117.49728 * 144.97279 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2583 -2.4950 0.1454 10 6 0.7023 -3.0860 -1.1518 11 7 1.8113 -3.4583 -2.0335 12 6 1.5601 -4.0344 -3.2258 13 8 0.4131 -4.2456 -3.5694 14 7 2.5804 -4.3773 -4.0368 15 8 2.3168 -4.9880 -5.2868 16 6 3.4901 -5.2967 -6.0420 17 6 3.0875 -5.9496 -7.3657 18 1 2.4052 -6.7823 -7.1950 19 6 4.3360 -6.4117 -8.1560 20 6 4.0171 -6.0398 -9.6171 21 8 2.6957 -5.4744 -9.6355 22 6 2.4610 -4.9086 -8.3280 23 6 1.7471 -3.4738 1.2149 24 6 0.4418 -2.7017 1.4228 25 1 -0.4850 0.8367 -0.0741 26 1 0.0755 -2.3456 -1.6490 27 1 0.1076 -3.9703 -0.9226 28 1 2.7264 -3.2900 -1.7594 29 1 3.4956 -4.2092 -3.7626 30 1 4.0448 -4.3800 -6.2425 31 1 4.1172 -5.9840 -5.4741 32 1 5.2233 -5.8804 -7.8120 33 1 4.4728 -7.4886 -8.0576 34 1 4.7387 -5.3074 -9.9790 35 1 4.0496 -6.9321 -10.2422 36 1 1.3922 -4.8066 -8.1401 37 1 2.9625 -3.9456 -8.2309 38 1 1.6727 -4.5387 0.9945 39 1 2.6083 -3.1765 1.8134 40 1 0.4449 -1.8969 2.1578 41 1 -0.4916 -3.2583 1.3389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797519114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -45.764411 kcal Electronic energy + Delta-G solvation = -22119.431630 eV Core-core repulsion = 18616.635353 eV Total energy + Delta-G solvation = -3502.796276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86528 -39.24248 -37.37268 -36.52765 -33.52372 -33.29393 -31.99980 -31.25919 -29.60227 -26.27785 -25.69955 -24.94427 -22.86688 -21.34751 -21.13169 -20.38804 -19.43779 -18.35702 -17.64193 -16.84692 -16.16599 -15.98855 -15.91847 -15.17340 -14.73480 -14.69733 -14.48225 -14.12854 -13.76950 -13.54573 -13.26771 -12.70710 -12.68591 -12.17836 -11.96686 -11.82824 -11.61516 -11.51447 -11.13807 -11.01608 -10.95105 -10.79604 -10.56382 -10.28482 -10.00053 -9.78046 -9.56133 -9.00217 -8.76020 -8.51431 -8.29645 -8.04594 -6.09185 -4.18481 1.83018 3.25349 3.32101 3.32606 3.58816 3.74744 4.00920 4.21755 4.33354 4.39580 4.55932 4.66098 4.75406 4.89432 4.94925 5.11888 5.17540 5.18771 5.30417 5.33033 5.40205 5.50499 5.65277 5.76610 5.99616 6.32135 6.43985 6.52440 6.56417 6.67099 6.74839 6.99905 7.07741 7.19232 7.34893 7.42829 7.52356 7.79381 8.31607 8.53848 8.82004 9.15095 9.48529 10.98599 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.003071 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.355056 B = 9114.321585 C = 9702.624911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.184 3.816 11 N -0.711 5.711 12 C 0.714 3.286 13 O -0.583 6.583 14 N -0.621 5.621 15 O -0.130 6.130 16 C 0.042 3.958 17 C -0.114 4.114 18 H 0.100 0.900 19 C -0.147 4.147 20 C 0.047 3.953 21 O -0.378 6.378 22 C 0.052 3.948 23 C -0.211 4.211 24 C -0.146 4.146 25 H 0.263 0.737 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.397 0.603 29 H 0.401 0.599 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 -10.800 -12.195 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.062 3.938 11 N -0.367 5.367 12 C 0.415 3.585 13 O -0.460 6.460 14 N -0.328 5.328 15 O -0.133 6.133 16 C -0.036 4.036 17 C -0.135 4.135 18 H 0.118 0.882 19 C -0.185 4.185 20 C -0.030 4.030 21 O -0.297 6.297 22 C -0.024 4.024 23 C -0.248 4.248 24 C -0.184 4.184 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.230 0.770 29 H 0.240 0.760 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.409 -10.898 -12.700 19.198 hybrid contribution 1.796 1.073 0.331 2.118 sum 11.205 -9.824 -12.369 19.367 Atomic orbital electron populations 1.69957 1.05887 1.27129 1.47894 1.24985 0.94807 0.98945 0.94255 0.86687 0.79652 0.83224 0.78563 1.20295 1.21259 1.20227 1.20290 0.92773 0.88627 1.52399 0.92254 1.19031 0.98761 0.93898 0.85642 1.20946 0.86240 0.96909 0.89749 1.45004 1.11713 1.63898 1.16111 1.15538 0.83640 0.79093 0.80237 1.90903 1.19394 1.60845 1.74822 1.46270 1.08461 1.67440 1.10579 1.90552 1.24958 1.79197 1.18618 1.22904 0.89272 0.99617 0.91808 1.22649 0.98284 0.99718 0.92804 0.88164 1.22933 0.97778 1.02777 0.95034 1.23142 0.85283 0.98430 0.96183 1.88902 1.32293 1.76018 1.32460 1.23684 1.02543 0.95324 0.80855 1.23033 0.98687 0.95709 1.07371 1.22498 0.92349 1.01078 1.02507 0.92703 0.90913 0.94385 0.76965 0.76022 0.91811 0.91713 0.90179 0.89808 0.92249 0.89713 0.87942 0.91720 0.91559 0.90367 0.89758 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 12.91 55.43 0.72 -23.26 16 2 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.25 29.55 -169.99 -5.02 15.22 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.50 -12.64 8.63 -34.44 -0.30 -12.94 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.63 1.38 -155.65 -0.21 0.42 16 10 C 0.18 4.16 5.50 -4.04 -0.02 4.13 16 11 N -0.71 -13.66 5.48 -65.23 -0.36 -14.02 16 12 C 0.71 14.15 8.71 -86.92 -0.76 13.40 16 13 O -0.58 -14.27 16.75 -12.86 -0.22 -14.49 16 14 N -0.62 -9.38 6.39 27.63 0.18 -9.20 16 15 O -0.13 -1.93 11.06 -29.62 -0.33 -2.25 16 16 C 0.04 0.40 5.56 37.15 0.21 0.60 16 17 C -0.11 -1.01 3.38 -88.61 -0.30 -1.31 16 18 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.15 -0.93 6.60 -25.20 -0.17 -1.10 16 20 C 0.05 0.35 7.70 37.73 0.29 0.64 16 21 O -0.38 -4.16 11.52 -35.23 -0.41 -4.57 16 22 C 0.05 0.54 7.13 38.21 0.27 0.81 16 23 C -0.21 -4.25 9.96 -26.69 -0.27 -4.51 16 24 C -0.15 -3.27 9.42 -26.69 -0.25 -3.52 16 25 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 26 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 27 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.40 6.67 8.38 -40.82 -0.34 6.33 16 29 H 0.40 4.43 8.56 -40.82 -0.35 4.08 16 30 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.40 7.86 -51.93 -0.41 0.00 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -32.18 348.85 -8.32 -40.50 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.54 Total: 8.35 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.60 Total: -1.53 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.54 Total: -46.49 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.95 Total: -21.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.18 -8.32 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797519114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.267 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds