Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99627 * 2 1 4 4 H 1.48494 * 109.47371 * 240.00066 * 3 2 1 5 5 H 1.48493 * 109.47355 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46802 * 120.00339 * 3 2 1 7 7 C 1.37869 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 173.55434 * 7 2 1 9 9 C 1.50699 * 120.00082 * 353.55621 * 7 2 1 10 10 C 1.52998 * 115.55410 * 85.40603 * 9 7 2 11 11 N 1.46497 * 109.47109 * 65.14174 * 10 9 7 12 12 C 1.34783 * 119.99857 * 178.29336 * 11 10 9 13 13 O 1.21584 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99675 * 180.02562 * 12 11 10 15 15 O 1.41598 * 119.99940 * 179.72208 * 14 12 11 16 16 C 1.42904 * 114.00519 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47280 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.80821 * 308.62485 * 17 16 15 19 19 C 1.54814 * 110.90662 * 185.00147 * 17 16 15 20 20 C 1.54105 * 104.18640 * 220.92030 * 19 17 16 21 21 O 1.43742 * 107.29598 * 357.97145 * 20 19 17 22 22 C 1.44381 * 106.97573 * 26.50958 * 21 20 19 23 23 C 1.53004 * 117.50148 * 231.07822 * 9 7 2 24 24 C 1.53009 * 117.49737 * 299.73427 * 9 7 2 25 25 H 0.96995 * 120.00276 * 5.05939 * 1 2 3 26 26 H 1.09007 * 109.47010 * 305.14370 * 10 9 7 27 27 H 1.09000 * 109.47234 * 185.14824 * 10 9 7 28 28 H 0.96997 * 120.00190 * 358.28553 * 11 10 9 29 29 H 0.97001 * 120.00430 * 359.97438 * 14 12 11 30 30 H 1.09002 * 109.46964 * 299.99943 * 16 15 14 31 31 H 1.08996 * 109.47008 * 59.99356 * 16 15 14 32 32 H 1.09000 * 110.48410 * 339.59301 * 19 17 16 33 33 H 1.08999 * 110.48935 * 102.24556 * 19 17 16 34 34 H 1.09002 * 109.87657 * 117.39296 * 20 19 17 35 35 H 1.08998 * 109.87978 * 238.39228 * 20 19 17 36 36 H 1.08997 * 110.61778 * 201.44323 * 22 21 20 37 37 H 1.08999 * 110.61939 * 78.44358 * 22 21 20 38 38 H 1.08996 * 117.50308 * 215.00321 * 23 9 7 39 39 H 1.09006 * 117.49492 * 0.02562 * 23 9 7 40 40 H 1.08998 * 117.49739 * 359.97438 * 24 9 7 41 41 H 1.08993 * 117.49728 * 144.97279 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1055 9 6 1.2583 -2.4950 0.1454 10 6 0.7023 -3.0860 -1.1518 11 7 1.8113 -3.4583 -2.0335 12 6 1.5601 -4.0344 -3.2258 13 8 0.4131 -4.2456 -3.5694 14 7 2.5804 -4.3773 -4.0368 15 8 2.3168 -4.9880 -5.2868 16 6 3.4901 -5.2967 -6.0420 17 6 3.0875 -5.9496 -7.3657 18 1 2.4052 -6.7823 -7.1950 19 6 4.3360 -6.4117 -8.1560 20 6 4.0171 -6.0398 -9.6171 21 8 2.6957 -5.4744 -9.6355 22 6 2.4610 -4.9086 -8.3280 23 6 1.7471 -3.4738 1.2149 24 6 0.4418 -2.7017 1.4228 25 1 -0.4850 0.8367 -0.0741 26 1 0.0755 -2.3456 -1.6490 27 1 0.1076 -3.9703 -0.9226 28 1 2.7264 -3.2900 -1.7594 29 1 3.4956 -4.2092 -3.7626 30 1 4.0448 -4.3800 -6.2425 31 1 4.1172 -5.9840 -5.4741 32 1 5.2233 -5.8804 -7.8120 33 1 4.4728 -7.4886 -8.0576 34 1 4.7387 -5.3074 -9.9790 35 1 4.0496 -6.9321 -10.2422 36 1 1.3922 -4.8066 -8.1401 37 1 2.9625 -3.9456 -8.2309 38 1 1.6727 -4.5387 0.9945 39 1 2.6083 -3.1765 1.8134 40 1 0.4449 -1.8969 2.1578 41 1 -0.4916 -3.2583 1.3389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797519114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = -67.834009 kcal Electronic energy + Delta-G solvation = -22120.388639 eV Core-core repulsion = 18616.635353 eV Total energy + Delta-G solvation = -3503.753286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90007 -40.46718 -38.72454 -38.05675 -35.06365 -34.34064 -33.93460 -32.42322 -30.32090 -27.96827 -27.01684 -26.39827 -23.50073 -22.97415 -22.32023 -21.50743 -21.23014 -19.57919 -19.10177 -17.86779 -17.59547 -16.91283 -16.87869 -16.60132 -16.22806 -16.20351 -15.71649 -15.62563 -14.97100 -14.72765 -14.40698 -14.31086 -13.75265 -13.53102 -13.41739 -12.90513 -12.85606 -12.76765 -12.47136 -12.37460 -12.35437 -11.99811 -11.85961 -11.56517 -11.52058 -11.33042 -10.83762 -10.70064 -10.42977 -10.22363 -10.00990 -9.61253 -8.06432 -6.19882 0.61275 1.46096 1.47763 1.54022 2.17468 2.45144 2.80685 3.01862 3.21956 3.38253 3.55487 3.63809 3.78805 3.89842 4.16599 4.18600 4.27640 4.31792 4.38328 4.51843 4.59925 4.69219 4.76093 4.76423 4.81178 4.85371 4.99235 5.01397 5.05112 5.14473 5.31514 5.58722 5.62244 5.67708 5.70496 5.81247 5.85511 6.08632 6.39678 6.87323 7.14126 7.49837 7.65584 9.00894 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.003071 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.355056 B = 9114.321585 C = 9702.624911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.006 3.994 10 C 0.201 3.799 11 N -0.701 5.701 12 C 0.713 3.287 13 O -0.636 6.636 14 N -0.601 5.601 15 O -0.158 6.158 16 C 0.037 3.963 17 C -0.112 4.112 18 H 0.089 0.911 19 C -0.136 4.136 20 C 0.037 3.963 21 O -0.405 6.405 22 C 0.047 3.953 23 C -0.174 4.174 24 C -0.160 4.160 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.411 0.589 29 H 0.423 0.577 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 -11.735 -12.406 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.543 4.543 8 H 0.086 0.914 9 C 0.005 3.995 10 C 0.076 3.924 11 N -0.358 5.358 12 C 0.414 3.586 13 O -0.517 6.517 14 N -0.307 5.307 15 O -0.162 6.162 16 C -0.039 4.039 17 C -0.132 4.132 18 H 0.107 0.893 19 C -0.174 4.174 20 C -0.039 4.039 21 O -0.325 6.325 22 C -0.029 4.029 23 C -0.211 4.211 24 C -0.198 4.198 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.247 0.753 29 H 0.266 0.734 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.632 -11.845 -12.917 21.603 hybrid contribution 0.879 1.296 0.303 1.595 sum 13.511 -10.549 -12.613 21.282 Atomic orbital electron populations 1.70096 1.07332 1.27388 1.49743 1.25713 0.95415 1.02108 0.94419 0.85747 0.78339 0.79440 0.78861 1.19550 1.22067 1.19476 1.20659 0.93275 0.89468 1.50924 0.91439 1.19032 0.99874 0.94512 0.86069 1.20500 0.86677 0.95496 0.89703 1.44695 1.11586 1.63699 1.15866 1.15615 0.83686 0.78836 0.80498 1.90868 1.21927 1.62875 1.75986 1.45781 1.08369 1.66042 1.10525 1.90567 1.28275 1.79192 1.18161 1.23228 0.88078 1.01114 0.91518 1.22631 0.99399 0.98776 0.92378 0.89287 1.22926 0.96967 1.03998 0.93464 1.23399 0.83941 0.99174 0.97390 1.88870 1.34405 1.76431 1.32771 1.23678 1.01619 0.96201 0.81402 1.23024 0.97309 0.96304 1.04453 1.22449 0.93927 1.01480 1.01959 0.93263 0.95320 0.94522 0.75305 0.73400 0.90054 0.89167 0.88167 0.88225 0.91127 0.88512 0.90026 0.91216 0.89159 0.89370 0.91745 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.98 12.91 21.44 0.28 -50.70 16 2 C 0.02 1.26 5.39 84.65 0.46 1.72 16 3 Si 0.95 41.36 29.55 68.60 2.03 43.39 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.51 -24.97 8.63 25.60 0.22 -24.75 16 8 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.27 1.38 -52.92 -0.07 0.20 16 10 C 0.20 9.11 5.50 86.38 0.48 9.59 16 11 N -0.70 -26.35 5.48 -478.54 -2.62 -28.97 16 12 C 0.71 27.92 8.71 179.05 1.56 29.48 16 13 O -0.64 -31.71 16.75 13.37 0.22 -31.48 16 14 N -0.60 -17.09 6.39 -184.75 -1.18 -18.27 16 15 O -0.16 -4.47 11.06 -21.43 -0.24 -4.71 16 16 C 0.04 0.61 5.56 71.98 0.40 1.01 16 17 C -0.11 -1.78 3.38 -9.49 -0.03 -1.81 16 18 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.14 -1.30 6.60 31.59 0.21 -1.09 16 20 C 0.04 0.47 7.70 72.36 0.56 1.03 16 21 O -0.41 -8.70 11.52 -148.98 -1.72 -10.42 16 22 C 0.05 0.96 7.13 72.67 0.52 1.48 16 23 C -0.17 -6.59 9.96 30.62 0.30 -6.28 16 24 C -0.16 -7.10 9.42 30.62 0.29 -6.81 16 25 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 26 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 28 H 0.41 12.96 8.38 -92.71 -0.78 12.18 16 29 H 0.42 8.10 8.56 -92.71 -0.79 7.30 16 30 H 0.08 1.06 7.98 -2.39 -0.02 1.04 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.59 7.86 -2.39 -0.02 0.57 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.29 7.93 -2.39 -0.02 1.27 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 40 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -71.10 348.85 1.12 -69.97 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.53 Total: 27.44 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 4.88 Total: 3.75 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -3.53 Total: -97.94 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.73 Total: -46.61 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -71.10 1.12 -69.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797519114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds