Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99731 * 3 2 1 5 5 H 1.48499 * 109.47172 * 29.99469 * 3 2 1 6 6 H 1.48492 * 109.47073 * 149.99706 * 3 2 1 7 7 C 1.37880 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47091 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47009 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00046 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99797 * 179.97438 * 13 12 11 16 16 C 1.45203 * 117.00032 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47172 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47130 * 65.00081 * 17 16 15 19 19 C 1.47057 * 125.40952 * 90.00073 * 18 17 16 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 17 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00151 * 9 7 2 26 26 H 1.09003 * 109.47363 * 300.00507 * 9 7 2 27 27 H 1.09005 * 109.47074 * 59.99395 * 10 9 7 28 28 H 1.09003 * 109.46831 * 300.00321 * 10 9 7 29 29 H 1.09003 * 109.47712 * 60.00048 * 11 10 9 30 30 H 1.09003 * 109.47136 * 299.99842 * 11 10 9 31 31 H 1.09001 * 109.47538 * 59.99637 * 12 11 10 32 32 H 1.09000 * 109.47269 * 299.99470 * 12 11 10 33 33 H 1.08998 * 109.46788 * 60.00050 * 16 15 13 34 34 H 1.09000 * 109.47190 * 300.00053 * 16 15 13 35 35 H 1.09000 * 109.47340 * 304.99861 * 17 16 15 36 36 H 1.09001 * 109.47326 * 185.00431 * 17 16 15 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 17 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 17 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0026 15 8 2.3921 -8.6176 -0.0020 16 6 1.6013 -9.8354 -0.0027 17 6 2.5333 -11.0487 -0.0022 18 7 3.2928 -11.0805 1.2501 19 6 2.8728 -11.7608 2.4843 20 6 4.0215 -11.4819 3.4730 21 7 4.9680 -10.6691 2.6881 22 6 4.4797 -10.4939 1.4531 23 8 5.0615 -9.8598 0.5941 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.8538 -5.0447 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.1006 -6.0924 0.8899 32 1 3.1017 -6.0923 -0.8901 33 1 0.9727 -9.8599 -0.8929 34 1 0.9722 -9.8605 0.8871 35 1 3.2226 -10.9777 -0.8436 36 1 1.9428 -11.9605 -0.0923 37 1 1.9388 -11.3385 2.8551 38 1 2.7658 -12.8320 2.3133 39 1 3.6575 -10.9215 4.3341 40 1 4.4874 -12.4145 3.7912 41 1 5.8114 -10.3181 3.0140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805871955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -119.821783 kcal Electronic energy + Delta-G solvation = -21930.327385 eV Core-core repulsion = 18424.319740 eV Total energy + Delta-G solvation = -3506.007645 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22854 -40.26009 -36.83261 -36.46904 -34.91615 -34.62029 -32.63478 -30.61945 -29.71389 -28.82818 -25.92717 -24.10105 -23.34105 -22.49022 -20.55670 -20.38717 -19.95038 -17.99194 -17.40874 -17.12453 -16.70538 -16.22479 -16.12975 -15.90322 -14.97799 -14.46957 -14.40149 -14.38032 -14.08936 -13.63758 -13.36783 -12.99371 -12.69759 -12.64807 -12.43551 -12.15812 -11.89463 -11.63223 -11.59564 -10.96731 -10.69280 -10.53409 -10.50468 -10.40655 -10.33817 -10.26918 -9.59637 -9.54804 -9.24262 -8.99401 -8.94748 -8.28475 -5.93449 -3.95717 2.21725 2.39894 2.73445 3.00734 3.36255 3.42028 3.45805 3.56082 3.96506 4.36380 4.43333 4.51342 4.63439 4.81162 4.85545 4.91965 5.02798 5.16141 5.23003 5.33582 5.37599 5.39103 5.42249 5.62023 5.85469 6.13312 6.27487 6.35054 6.48965 6.55996 6.82287 6.83081 7.01028 7.21437 7.22534 7.75963 7.91261 7.93749 8.07898 8.40136 8.50030 9.11932 9.67898 11.17995 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.002552 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.915302 B =10969.238417 C =11448.962136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.107 4.107 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.512 6.512 15 O -0.344 6.344 16 C 0.043 3.957 17 C 0.154 3.846 18 N -0.635 5.635 19 C 0.090 3.910 20 C 0.093 3.907 21 N -0.746 5.746 22 C 0.701 3.299 23 O -0.569 6.569 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -29.968 6.218 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.303 3.697 14 O -0.399 6.399 15 O -0.260 6.260 16 C -0.033 4.033 17 C 0.032 3.968 18 N -0.374 5.374 19 C -0.034 4.034 20 C -0.032 4.032 21 N -0.409 5.409 22 C 0.401 3.599 23 O -0.444 6.444 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.852 -29.567 5.624 30.661 hybrid contribution 0.447 0.916 0.360 1.081 sum 6.300 -28.652 5.984 29.940 Atomic orbital electron populations 1.69975 1.06060 1.26505 1.51040 1.25043 0.94846 0.99251 0.95455 0.86597 0.79830 0.83525 0.78068 1.20689 1.21274 1.19893 1.21289 0.93046 0.91159 1.50302 0.92680 1.19096 0.94027 0.91240 0.97316 1.21650 0.99129 0.93561 1.00440 1.21561 0.97053 0.92767 1.03064 1.21575 0.99819 0.87934 1.05516 1.24223 0.87469 0.86184 0.71777 1.90652 1.15723 1.88028 1.45546 1.86696 1.40902 1.14408 1.84033 1.23505 0.93886 0.82976 1.02914 1.21320 0.94384 0.96024 0.85106 1.47064 1.21028 1.56586 1.12756 1.22390 0.98261 0.98447 0.84297 1.22366 0.89533 0.96307 0.94983 1.45192 1.24610 1.58543 1.12559 1.15851 0.81375 0.79670 0.83042 1.91003 1.62681 1.44920 1.45825 0.93059 0.96549 0.96587 0.93247 0.93178 0.91593 0.91713 0.88124 0.87887 0.90071 0.91253 0.88438 0.87927 0.90174 0.89982 0.89967 0.90007 0.72923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 11 C -0.11 -1.99 4.50 -26.74 -0.12 -2.11 16 12 C -0.11 -1.71 5.81 -27.88 -0.16 -1.87 16 13 C 0.46 7.30 7.96 36.01 0.29 7.59 16 14 O -0.51 -9.31 15.73 -18.75 -0.29 -9.61 16 15 O -0.34 -4.91 9.76 -39.29 -0.38 -5.29 16 16 C 0.04 0.43 5.81 37.16 0.22 0.65 16 17 C 0.15 1.17 6.40 -4.04 -0.03 1.14 16 18 N -0.63 -5.46 2.92 -178.81 -0.52 -5.98 16 19 C 0.09 0.40 7.67 -3.16 -0.02 0.38 16 20 C 0.09 0.38 8.08 -2.98 -0.02 0.35 16 21 N -0.75 -5.84 6.39 -64.46 -0.41 -6.26 16 22 C 0.70 8.19 8.36 -88.40 -0.74 7.45 16 23 O -0.57 -9.33 17.36 5.28 0.09 -9.24 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.10 0.86 7.92 -51.93 -0.41 0.45 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.43 2.80 8.96 -40.82 -0.37 2.43 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -38.41 350.55 -8.46 -46.87 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.65 Total: -3.37 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.28 Total: -2.51 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.20 Total: -39.34 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.59 Total: -24.14 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.41 -8.46 -46.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805871955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.953 kcal (2) G-P(sol) polarization free energy of solvation -38.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds