Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48499 * 109.47116 * 269.99731 * 3 2 1 5 5 H 1.48499 * 109.47172 * 29.99469 * 3 2 1 6 6 H 1.48492 * 109.47073 * 149.99706 * 3 2 1 7 7 C 1.37880 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99913 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47455 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47091 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47009 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00046 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99797 * 179.97438 * 13 12 11 16 16 C 1.45203 * 117.00032 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47172 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47130 * 65.00081 * 17 16 15 19 19 C 1.47057 * 125.40952 * 90.00073 * 18 17 16 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 17 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 0.96994 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00151 * 9 7 2 26 26 H 1.09003 * 109.47363 * 300.00507 * 9 7 2 27 27 H 1.09005 * 109.47074 * 59.99395 * 10 9 7 28 28 H 1.09003 * 109.46831 * 300.00321 * 10 9 7 29 29 H 1.09003 * 109.47712 * 60.00048 * 11 10 9 30 30 H 1.09003 * 109.47136 * 299.99842 * 11 10 9 31 31 H 1.09001 * 109.47538 * 59.99637 * 12 11 10 32 32 H 1.09000 * 109.47269 * 299.99470 * 12 11 10 33 33 H 1.08998 * 109.46788 * 60.00050 * 16 15 13 34 34 H 1.09000 * 109.47190 * 300.00053 * 16 15 13 35 35 H 1.09000 * 109.47340 * 304.99861 * 17 16 15 36 36 H 1.09001 * 109.47326 * 185.00431 * 17 16 15 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 17 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 17 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0026 15 8 2.3921 -8.6176 -0.0020 16 6 1.6013 -9.8354 -0.0027 17 6 2.5333 -11.0487 -0.0022 18 7 3.2928 -11.0805 1.2501 19 6 2.8728 -11.7608 2.4843 20 6 4.0215 -11.4819 3.4730 21 7 4.9680 -10.6691 2.6881 22 6 4.4797 -10.4939 1.4531 23 8 5.0615 -9.8598 0.5941 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.8538 -5.0447 -0.8914 30 1 0.8533 -5.0451 0.8886 31 1 3.1006 -6.0924 0.8899 32 1 3.1017 -6.0923 -0.8901 33 1 0.9727 -9.8599 -0.8929 34 1 0.9722 -9.8605 0.8871 35 1 3.2226 -10.9777 -0.8436 36 1 1.9428 -11.9605 -0.0923 37 1 1.9388 -11.3385 2.8551 38 1 2.7658 -12.8320 2.3133 39 1 3.6575 -10.9215 4.3341 40 1 4.4874 -12.4145 3.7912 41 1 5.8114 -10.3181 3.0140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805871955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -146.787212 kcal Electronic energy + Delta-G solvation = -21931.496694 eV Core-core repulsion = 18424.319740 eV Total energy + Delta-G solvation = -3507.176954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92657 -41.41265 -37.97709 -37.29818 -36.65579 -35.31694 -34.67535 -31.86913 -30.93409 -29.42560 -27.72767 -25.19153 -24.13081 -23.68156 -22.06423 -21.48396 -21.13944 -18.80699 -18.50402 -18.37856 -17.94657 -17.50541 -17.15544 -16.88278 -16.47074 -16.18220 -15.33027 -15.11578 -14.78430 -14.63641 -14.56602 -14.31758 -13.91568 -13.71830 -13.54940 -13.34068 -13.10705 -12.87168 -12.83096 -12.62442 -12.36861 -12.23825 -12.21458 -11.69527 -11.61996 -11.42411 -11.31659 -11.25608 -11.06732 -10.55671 -10.29301 -9.48597 -8.19816 -6.31653 1.15583 1.39866 1.42062 1.53233 1.60562 1.73933 2.20317 2.41480 3.09681 3.12956 3.62610 3.65941 3.88096 3.89713 4.00494 4.03200 4.21366 4.23282 4.32285 4.50724 4.57800 4.60500 4.70228 4.73644 4.75183 4.82892 4.99937 5.06587 5.10565 5.24786 5.28863 5.42154 5.54369 5.74270 5.75208 5.86257 6.23962 6.24568 6.57898 6.74394 6.86171 7.37772 7.64389 8.92501 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028773 B = 0.002552 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.915302 B =10969.238417 C =11448.962136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.096 4.096 12 C -0.105 4.105 13 C 0.465 3.535 14 O -0.541 6.541 15 O -0.352 6.352 16 C 0.035 3.965 17 C 0.156 3.844 18 N -0.637 5.637 19 C 0.085 3.915 20 C 0.091 3.909 21 N -0.744 5.744 22 C 0.685 3.315 23 O -0.630 6.630 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.012 1.012 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.234 -31.401 7.137 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.142 4.142 13 C 0.310 3.690 14 O -0.432 6.432 15 O -0.268 6.268 16 C -0.040 4.040 17 C 0.034 3.966 18 N -0.376 5.376 19 C -0.037 4.037 20 C -0.033 4.033 21 N -0.406 5.406 22 C 0.385 3.615 23 O -0.510 6.510 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 6.910 -31.062 6.592 32.497 hybrid contribution 0.067 1.255 0.119 1.262 sum 6.978 -29.807 6.711 31.340 Atomic orbital electron populations 1.70119 1.07977 1.27801 1.51820 1.26066 0.95803 1.03643 0.94728 0.85388 0.78648 0.78114 0.78543 1.19706 1.20735 1.18512 1.21745 0.93705 0.92308 1.50382 0.91808 1.19034 0.94561 0.93418 0.94622 1.21450 0.97984 0.92632 1.01410 1.21325 0.97209 0.92915 1.01913 1.21433 0.98956 0.86685 1.07119 1.24137 0.86901 0.86893 0.71067 1.90639 1.16868 1.88524 1.47157 1.86693 1.41597 1.15115 1.83401 1.23898 0.94511 0.82044 1.03530 1.21485 0.93990 0.96590 0.84509 1.47220 1.20106 1.56046 1.14192 1.22732 0.98596 0.99913 0.82489 1.22683 0.88784 0.97104 0.94729 1.45275 1.25141 1.58311 1.11860 1.16297 0.82163 0.79577 0.83495 1.90942 1.64489 1.47694 1.47899 0.92777 0.99343 0.99326 0.92170 0.92121 0.92819 0.92918 0.86564 0.86203 0.89295 0.90830 0.90109 0.83199 0.89265 0.86950 0.88719 0.87273 0.72614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.29 21.45 0.28 -59.00 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.10 -4.15 5.15 30.59 0.16 -4.00 16 11 C -0.10 -3.60 4.50 30.59 0.14 -3.46 16 12 C -0.10 -3.15 5.81 29.85 0.17 -2.97 16 13 C 0.46 14.63 7.96 71.24 0.57 15.20 16 14 O -0.54 -19.79 15.73 21.97 0.35 -19.44 16 15 O -0.35 -9.89 9.76 -51.38 -0.50 -10.39 16 16 C 0.03 0.67 5.81 71.98 0.42 1.09 16 17 C 0.16 2.09 6.40 86.38 0.55 2.65 16 18 N -0.64 -9.79 2.92 -838.36 -2.45 -12.24 16 19 C 0.08 0.49 7.67 86.65 0.66 1.15 16 20 C 0.09 0.47 8.08 86.58 0.70 1.17 16 21 N -0.74 -10.72 6.39 -476.58 -3.04 -13.76 16 22 C 0.68 15.61 8.36 179.57 1.50 17.11 16 23 O -0.63 -21.14 17.36 -4.01 -0.07 -21.21 16 24 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 25 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 2.13 8.10 -2.39 -0.02 2.11 16 30 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.09 1.55 8.13 -2.39 -0.02 1.53 16 34 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.08 1.39 7.92 -2.39 -0.02 1.37 16 36 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.43 5.34 8.96 -92.71 -0.83 4.51 16 Total: -1.00 -86.05 350.55 2.50 -83.55 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.19 Total: 7.45 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.72 Total: -2.50 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -5.21 Total: -85.00 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.23 Total: -51.04 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -86.05 2.50 -83.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805871955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.236 kcal (2) G-P(sol) polarization free energy of solvation -86.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds