Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99702 * 2 1 4 4 O 1.21518 * 120.00125 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.47575 * 134.49436 * 179.97438 * 5 3 2 7 7 C 1.53944 * 86.11731 * 155.35763 * 6 5 3 8 8 N 1.46506 * 113.74274 * 137.95197 * 7 6 5 9 9 C 1.34773 * 119.99969 * 156.64909 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47274 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47231 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47584 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47633 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99951 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00238 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47351 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47271 * 119.99840 * 19 17 15 22 22 H 1.48501 * 109.46681 * 239.99895 * 19 17 15 23 23 C 1.47812 * 134.45416 * 359.86767 * 5 3 2 24 24 H 1.08996 * 109.46981 * 60.00483 * 1 2 3 25 25 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47273 * 299.99962 * 1 2 3 27 27 H 1.09004 * 113.77027 * 41.06404 * 6 5 3 28 28 H 1.08996 * 113.77596 * 269.66188 * 6 5 3 29 29 H 1.09003 * 113.74626 * 269.15563 * 7 6 5 30 30 H 0.97005 * 119.99811 * 336.92962 * 8 7 6 31 31 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 32 32 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 33 33 H 1.09004 * 109.47116 * 299.99649 * 12 11 9 34 34 H 1.08993 * 109.47352 * 59.99893 * 12 11 9 35 35 H 1.08999 * 109.47343 * 300.00090 * 13 12 11 36 36 H 1.09010 * 109.47369 * 59.99437 * 13 12 11 37 37 H 1.09007 * 109.47025 * 300.00312 * 14 13 12 38 38 H 1.09006 * 109.47143 * 60.00006 * 14 13 12 39 39 H 0.96995 * 119.99960 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.77162 * 90.38101 * 23 5 3 41 41 H 1.09003 * 113.83503 * 318.91526 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.3868 2.3757 0.0002 7 6 5.3632 1.3732 0.6417 8 7 6.7223 1.4440 0.0993 9 6 7.7644 1.0055 0.8330 10 8 7.5769 0.5518 1.9420 11 6 9.1625 1.0789 0.2753 12 6 10.1507 0.5207 1.3012 13 6 11.5702 0.5958 0.7353 14 6 12.5586 0.0381 1.7614 15 6 13.9567 0.1115 1.2038 16 1 14.1237 0.5160 0.2164 17 6 15.0227 -0.3376 1.9542 18 7 14.8194 -0.8296 3.1568 19 14 16.7557 -0.2459 1.2632 20 1 16.7150 0.3441 -0.0990 21 1 17.5962 0.6026 2.1456 22 1 17.3336 -1.6121 1.1933 23 6 4.4982 0.2709 0.0036 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.1142 3.2035 0.6549 28 1 4.6828 2.7003 -0.9973 29 1 5.3400 1.3739 1.7315 30 1 6.8727 1.8104 -0.7862 31 1 9.2195 0.4912 -0.6409 32 1 9.4125 2.1172 0.0571 33 1 10.0938 1.1081 2.2176 34 1 9.9006 -0.5176 1.5191 35 1 11.6276 0.0087 -0.1812 36 1 11.8202 1.6343 0.5177 37 1 12.5012 0.6256 2.6778 38 1 12.3089 -1.0003 1.9794 39 1 15.5693 -1.1452 3.6848 40 1 4.8269 -0.0238 -0.9930 41 1 4.3143 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807109974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -97.532508 kcal Electronic energy + Delta-G solvation = -21218.200182 eV Core-core repulsion = 17713.159072 eV Total energy + Delta-G solvation = -3505.041110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18192 -40.02148 -38.76278 -36.53737 -34.94546 -34.11683 -32.62643 -30.34964 -29.37946 -27.48451 -26.77959 -25.66848 -23.10794 -21.88624 -20.74051 -20.31773 -19.98060 -18.51296 -17.48022 -17.36484 -16.93560 -16.35447 -16.14786 -15.77712 -15.07520 -14.54971 -14.45439 -14.21313 -13.98034 -13.65596 -13.39627 -13.24624 -12.62998 -12.61032 -12.47582 -12.20251 -11.77452 -11.71214 -11.60079 -11.18065 -11.01310 -11.00472 -10.56337 -10.49597 -10.43245 -9.93626 -9.63406 -9.46087 -9.32303 -9.23923 -8.98160 -8.31398 -5.96011 -3.98484 1.46905 2.37648 2.54543 2.96261 3.32665 3.32863 3.39995 3.43709 3.90709 4.29279 4.48320 4.55886 4.73507 4.76838 4.79830 4.82614 4.93762 4.99460 5.10146 5.19317 5.26320 5.32591 5.39553 5.51401 5.82488 5.87622 6.11041 6.11162 6.27645 6.52156 6.81824 6.99688 7.07694 7.18206 7.26497 7.73639 7.81264 7.89108 8.05330 8.10966 8.47177 9.09535 9.65312 11.15311 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.063458 B = 0.001973 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.130254 B =14184.897757 C =14338.820645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.368 6.368 3 C 0.674 3.326 4 O -0.571 6.571 5 N -0.631 5.631 6 C 0.125 3.875 7 C 0.115 3.885 8 N -0.729 5.729 9 C 0.516 3.484 10 O -0.529 6.529 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.093 3.907 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.404 0.596 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.087 4.015 -9.859 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.430 3.570 4 O -0.460 6.460 5 N -0.375 5.375 6 C 0.003 3.997 7 C 0.008 3.992 8 N -0.383 5.383 9 C 0.304 3.696 10 O -0.403 6.403 11 C -0.178 4.178 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.031 4.031 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.239 0.761 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.629 3.869 -8.885 28.338 hybrid contribution 0.777 0.188 -0.863 1.176 sum -25.852 4.057 -9.747 27.925 Atomic orbital electron populations 1.23236 0.74140 1.03651 1.02789 1.86267 1.24236 1.30755 1.86921 1.17438 0.81347 0.82243 0.75967 1.91018 1.63526 1.35193 1.56276 1.48232 1.00718 1.12101 1.76411 1.23556 0.82725 0.91565 1.01813 1.22928 0.80753 0.94556 1.00985 1.45992 1.05559 1.66029 1.20684 1.21214 0.87099 0.76040 0.85236 1.90729 1.85794 1.43932 1.19880 1.21814 0.90586 1.03889 1.01549 1.21463 0.94179 1.01427 0.97160 1.21650 0.92971 1.00279 0.99913 1.19106 0.92641 0.96256 0.93825 1.21323 0.92065 1.40692 1.01751 0.92694 1.25048 0.99173 0.95455 0.94943 1.69983 1.31083 1.42168 1.10197 0.86556 0.84833 0.77639 0.79072 1.19791 1.21060 1.21069 1.23899 0.82627 0.94558 1.01998 0.91825 0.87777 0.91728 0.88594 0.88764 0.85130 0.76083 0.88926 0.88909 0.91757 0.91747 0.93454 0.93452 0.96572 0.96575 0.93099 0.88870 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.60 10.55 -40.31 -0.43 -4.03 16 3 C 0.67 7.62 8.92 54.06 0.48 8.10 16 4 O -0.57 -8.01 16.86 -19.29 -0.33 -8.34 16 5 N -0.63 -5.59 3.61 -184.16 -0.67 -6.26 16 6 C 0.13 0.80 8.59 -2.97 -0.03 0.77 16 7 C 0.11 0.84 4.40 -70.14 -0.31 0.53 16 8 N -0.73 -5.27 5.37 -55.33 -0.30 -5.56 16 9 C 0.52 5.99 7.83 -10.98 -0.09 5.90 16 10 O -0.53 -8.52 15.60 5.56 0.09 -8.44 16 11 C -0.14 -1.58 5.70 -27.88 -0.16 -1.74 16 12 C -0.10 -1.74 4.50 -26.74 -0.12 -1.86 16 13 C -0.11 -2.18 5.15 -26.74 -0.14 -2.32 16 14 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.09 0.66 8.69 -2.83 -0.02 0.63 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.13 1.20 7.50 -51.93 -0.39 0.81 16 30 H 0.40 1.65 8.71 -40.82 -0.36 1.29 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -36.81 354.30 -7.06 -43.86 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.62 Total: -4.87 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 0.14 Total: -1.84 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.23 Total: -38.36 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.66 Total: -20.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.81 -7.06 -43.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807109974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.672 kcal (2) G-P(sol) polarization free energy of solvation -36.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds