Wall clock time and date at job start Tue Mar 31 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99702 * 2 1 4 4 O 1.21518 * 120.00125 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.47575 * 134.49436 * 179.97438 * 5 3 2 7 7 C 1.53944 * 86.11731 * 155.35763 * 6 5 3 8 8 N 1.46506 * 113.74274 * 137.95197 * 7 6 5 9 9 C 1.34773 * 119.99969 * 156.64909 * 8 7 6 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.52992 * 109.47274 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47231 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47584 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47633 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99951 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00238 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99887 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47351 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47271 * 119.99840 * 19 17 15 22 22 H 1.48501 * 109.46681 * 239.99895 * 19 17 15 23 23 C 1.47812 * 134.45416 * 359.86767 * 5 3 2 24 24 H 1.08996 * 109.46981 * 60.00483 * 1 2 3 25 25 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47273 * 299.99962 * 1 2 3 27 27 H 1.09004 * 113.77027 * 41.06404 * 6 5 3 28 28 H 1.08996 * 113.77596 * 269.66188 * 6 5 3 29 29 H 1.09003 * 113.74626 * 269.15563 * 7 6 5 30 30 H 0.97005 * 119.99811 * 336.92962 * 8 7 6 31 31 H 1.09004 * 109.46762 * 300.00389 * 11 9 8 32 32 H 1.08998 * 109.46924 * 59.99727 * 11 9 8 33 33 H 1.09004 * 109.47116 * 299.99649 * 12 11 9 34 34 H 1.08993 * 109.47352 * 59.99893 * 12 11 9 35 35 H 1.08999 * 109.47343 * 300.00090 * 13 12 11 36 36 H 1.09010 * 109.47369 * 59.99437 * 13 12 11 37 37 H 1.09007 * 109.47025 * 300.00312 * 14 13 12 38 38 H 1.09006 * 109.47143 * 60.00006 * 14 13 12 39 39 H 0.96995 * 119.99960 * 180.02562 * 18 17 15 40 40 H 1.09000 * 113.77162 * 90.38101 * 23 5 3 41 41 H 1.09003 * 113.83503 * 318.91526 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.3868 2.3757 0.0002 7 6 5.3632 1.3732 0.6417 8 7 6.7223 1.4440 0.0993 9 6 7.7644 1.0055 0.8330 10 8 7.5769 0.5518 1.9420 11 6 9.1625 1.0789 0.2753 12 6 10.1507 0.5207 1.3012 13 6 11.5702 0.5958 0.7353 14 6 12.5586 0.0381 1.7614 15 6 13.9567 0.1115 1.2038 16 1 14.1237 0.5160 0.2164 17 6 15.0227 -0.3376 1.9542 18 7 14.8194 -0.8296 3.1568 19 14 16.7557 -0.2459 1.2632 20 1 16.7150 0.3441 -0.0990 21 1 17.5962 0.6026 2.1456 22 1 17.3336 -1.6121 1.1933 23 6 4.4982 0.2709 0.0036 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.1142 3.2035 0.6549 28 1 4.6828 2.7003 -0.9973 29 1 5.3400 1.3739 1.7315 30 1 6.8727 1.8104 -0.7862 31 1 9.2195 0.4912 -0.6409 32 1 9.4125 2.1172 0.0571 33 1 10.0938 1.1081 2.2176 34 1 9.9006 -0.5176 1.5191 35 1 11.6276 0.0087 -0.1812 36 1 11.8202 1.6343 0.5177 37 1 12.5012 0.6256 2.6778 38 1 12.3089 -1.0003 1.9794 39 1 15.5693 -1.1452 3.6848 40 1 4.8269 -0.0238 -0.9930 41 1 4.3143 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807109974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:30 Heat of formation + Delta-G solvation = -124.608883 kcal Electronic energy + Delta-G solvation = -21219.374302 eV Core-core repulsion = 17713.159072 eV Total energy + Delta-G solvation = -3506.215229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90282 -40.85916 -39.57154 -37.35392 -36.58278 -34.94307 -34.55527 -31.64399 -30.45437 -28.17994 -27.38072 -27.22787 -24.52206 -22.96097 -21.76680 -21.45310 -21.05803 -19.17535 -18.40964 -18.24375 -18.06895 -17.82933 -17.06367 -16.80519 -16.47066 -15.84502 -15.41748 -15.18532 -14.93241 -14.52918 -14.41867 -14.15595 -13.85550 -13.63899 -13.53310 -13.22834 -13.18989 -13.00627 -12.82185 -12.42120 -12.28746 -12.09485 -12.06798 -11.88748 -11.87398 -11.31713 -11.31403 -11.11875 -10.73570 -10.53356 -10.18693 -10.00175 -8.16755 -6.28514 0.82916 1.42247 1.42847 1.56252 1.56714 1.66049 2.22572 2.43787 2.70563 3.16180 3.31590 3.66974 3.89514 4.05437 4.13527 4.22466 4.23994 4.30364 4.31695 4.45361 4.47352 4.61166 4.66879 4.69871 4.76665 4.90803 4.93949 4.96793 5.18726 5.26369 5.38453 5.40720 5.48068 5.62324 5.82990 5.92033 6.28304 6.36225 6.58978 6.90820 7.02883 7.31109 7.41159 8.95553 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.063458 B = 0.001973 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.130254 B =14184.897757 C =14338.820645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.667 3.333 4 O -0.607 6.607 5 N -0.635 5.635 6 C 0.130 3.870 7 C 0.116 3.884 8 N -0.703 5.703 9 C 0.518 3.482 10 O -0.583 6.583 11 C -0.128 4.128 12 C -0.098 4.098 13 C -0.096 4.096 14 C 0.016 3.984 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.098 3.902 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.425 0.575 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.061 0.939 37 H -0.016 1.016 38 H -0.015 1.015 39 H 0.262 0.738 40 H 0.117 0.883 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.901 4.727 -12.765 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.289 6.289 3 C 0.423 3.577 4 O -0.499 6.499 5 N -0.378 5.378 6 C 0.009 3.991 7 C 0.009 3.991 8 N -0.357 5.357 9 C 0.307 3.693 10 O -0.462 6.462 11 C -0.167 4.167 12 C -0.136 4.136 13 C -0.134 4.134 14 C -0.021 4.021 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.793 3.207 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.025 4.025 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.264 0.736 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.454 4.597 -11.853 29.350 hybrid contribution 0.676 -0.067 0.080 0.684 sum -25.777 4.530 -11.773 28.698 Atomic orbital electron populations 1.23522 0.72581 1.05687 1.02652 1.86271 1.25884 1.30072 1.86659 1.17683 0.81978 0.82187 0.75855 1.90982 1.64481 1.36299 1.58148 1.48402 1.00379 1.13628 1.75366 1.23726 0.81210 0.90745 1.03379 1.22763 0.80759 0.95579 0.99978 1.45659 1.04555 1.64448 1.21008 1.21209 0.87959 0.75542 0.84609 1.90727 1.86494 1.46700 1.22326 1.21682 0.88835 1.05735 1.00482 1.21258 0.94096 1.00318 0.97970 1.21451 0.92905 1.00677 0.98352 1.19084 0.94222 0.94259 0.94515 1.21810 0.93189 1.40479 1.02294 0.91512 1.26090 1.04292 0.94916 0.95200 1.70137 1.32656 1.43227 1.11839 0.85344 0.78613 0.77815 0.78923 1.18036 1.20602 1.20582 1.24002 0.81529 0.93930 1.03085 0.91778 0.84655 0.92112 0.88766 0.85585 0.87360 0.73596 0.85900 0.86026 0.93965 0.93829 0.91981 0.92061 0.99755 0.99704 0.92925 0.86464 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.38 -7.10 10.55 -55.44 -0.59 -7.68 16 3 C 0.67 14.72 8.92 129.79 1.16 15.88 16 4 O -0.61 -17.03 16.86 19.78 0.33 -16.69 16 5 N -0.64 -10.38 3.61 -966.96 -3.49 -13.87 16 6 C 0.13 1.37 8.59 86.49 0.74 2.11 16 7 C 0.12 1.50 4.40 46.75 0.21 1.71 16 8 N -0.70 -8.13 5.37 -447.36 -2.40 -10.53 16 9 C 0.52 11.11 7.83 87.66 0.69 11.80 16 10 O -0.58 -18.99 15.60 -3.03 -0.05 -19.04 16 11 C -0.13 -2.55 5.70 29.85 0.17 -2.38 16 12 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 13 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 14 C 0.02 0.88 4.97 29.85 0.15 1.03 16 15 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 17 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 18 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 19 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.10 1.19 8.69 86.45 0.75 1.95 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 0.57 8.11 -2.39 -0.02 0.55 16 29 H 0.11 1.99 7.50 -2.39 -0.02 1.97 16 30 H 0.42 1.55 8.71 -92.70 -0.81 0.75 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 37 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 38 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -83.63 354.30 2.38 -81.25 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 0.21 Total: 1.90 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.05 Total: -3.41 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -5.61 Total: -82.67 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.30 Total: -43.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -83.63 2.38 -81.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807109974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.359 kcal (2) G-P(sol) polarization free energy of solvation -83.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds