Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50696 * 109.46934 * 270.00143 * 3 2 1 5 5 H 1.08001 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47050 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47432 * 119.99696 * 8 6 4 11 11 H 1.48502 * 109.46640 * 239.99635 * 8 6 4 12 12 C 1.39682 * 119.99815 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07043 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46810 * 299.99521 * 19 18 17 21 21 F 1.39896 * 109.47039 * 59.99735 * 19 18 17 22 22 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 23 23 C 1.38107 * 120.07495 * 359.45470 * 22 15 14 24 24 H 1.09006 * 109.47190 * 270.00125 * 1 2 3 25 25 H 1.09005 * 109.47273 * 29.99773 * 1 2 3 26 26 H 1.08999 * 109.47518 * 150.00002 * 1 2 3 27 27 H 1.08992 * 109.47000 * 30.00031 * 3 2 1 28 28 H 1.08998 * 109.46696 * 150.00317 * 3 2 1 29 29 H 0.96998 * 120.00344 * 180.02562 * 7 6 4 30 30 H 1.07999 * 120.04104 * 359.95514 * 13 12 2 31 31 H 1.07994 * 119.96170 * 179.97438 * 14 13 12 32 32 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 33 33 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 34 34 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 35 35 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 36 36 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 37 37 H 1.09006 * 109.46835 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.96155 * 179.70462 * 22 15 14 39 39 H 1.08001 * 120.03692 * 180.27771 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8007 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6679 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4135 -0.0005 14 6 2.1638 -3.6078 -0.0016 15 6 3.5467 -3.6060 -0.0021 16 6 4.3001 -4.9111 -0.0027 17 7 4.5444 -5.3349 -1.3880 18 6 5.2780 -6.6070 -1.4277 19 6 5.5136 -7.0145 -2.8835 20 9 4.2825 -7.1659 -3.5305 21 9 6.2615 -6.0245 -3.5297 22 6 4.2397 -2.4094 0.0041 23 6 3.5524 -1.2115 -0.0005 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 4.0312 4.4434 -0.8503 30 1 0.3902 -2.4156 0.0006 31 1 1.6256 -4.5441 -0.0012 32 1 3.7112 -5.6709 0.5111 33 1 5.2527 -4.7810 0.5107 34 1 5.0332 -4.6190 -1.9043 35 1 6.2375 -6.4890 -0.9240 36 1 4.6955 -7.3783 -0.9238 37 1 6.0576 -7.9587 -2.9130 38 1 5.3197 -2.4116 0.0085 39 1 4.0943 -0.2773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809424516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -74.186576 kcal Electronic energy + Delta-G solvation = -21705.358181 eV Core-core repulsion = 18090.241911 eV Total energy + Delta-G solvation = -3615.116270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.01043 -47.02259 -39.05959 -36.74914 -35.14210 -32.72536 -30.89144 -30.44273 -28.33890 -27.77886 -25.54603 -23.96673 -22.43142 -22.16161 -21.47307 -19.61320 -17.63132 -17.50858 -17.02728 -16.55014 -16.30276 -15.53646 -14.92130 -14.75103 -14.46720 -14.19730 -13.91007 -13.70311 -13.63179 -13.39063 -13.01957 -12.91874 -12.85831 -12.37872 -12.19324 -11.89322 -11.85132 -11.39930 -11.25769 -11.23152 -10.91670 -10.69439 -10.63711 -10.27275 -9.88097 -9.75117 -8.87920 -8.56749 -8.51078 -8.26886 -6.47543 -6.02196 -4.17640 2.10772 2.19465 3.25916 3.34133 3.39850 3.62097 3.93023 4.05690 4.15442 4.34967 4.41578 4.58404 4.81573 5.15855 5.17616 5.21401 5.26208 5.36804 5.57664 5.61699 5.69251 5.82863 6.01078 6.07975 6.28425 6.38250 6.42829 6.63996 6.72734 6.95617 7.02943 7.16611 7.20316 7.27730 7.36019 7.59514 7.81242 8.15235 8.26287 8.48139 8.92021 9.49467 10.95318 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.003803 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.702747 B = 7360.925162 C = 8387.849802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.248 3.752 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.243 3.757 13 C -0.223 4.223 14 C -0.049 4.049 15 C -0.178 4.178 16 C 0.118 3.882 17 N -0.682 5.682 18 C 0.006 3.994 19 C 0.266 3.734 20 F -0.197 7.197 21 F -0.207 7.207 22 C -0.066 4.066 23 C -0.188 4.188 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.263 0.737 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.351 0.649 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -19.626 1.530 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.136 3.864 13 C -0.246 4.246 14 C -0.068 4.068 15 C -0.181 4.181 16 C -0.009 4.009 17 N -0.315 5.315 18 C -0.125 4.125 19 C 0.211 3.789 20 F -0.178 7.178 21 F -0.189 7.189 22 C -0.085 4.085 23 C -0.210 4.210 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.767 -19.500 1.481 19.636 hybrid contribution 1.049 0.858 -0.885 1.619 sum 2.816 -18.642 0.596 18.863 Atomic orbital electron populations 1.21481 0.81459 1.01993 0.99695 1.47118 1.04426 1.04624 1.75861 1.19293 0.92071 0.78756 0.97018 1.21630 1.36262 1.06402 0.92685 0.92157 1.24963 0.95396 0.96280 0.97422 1.69939 1.38433 1.14368 1.30710 0.86470 0.78053 0.78468 0.84679 1.19674 1.20939 1.20839 1.17971 0.91504 0.86026 0.90910 1.20580 0.99082 0.91394 1.13543 1.20492 0.93161 0.96570 0.96606 1.19107 0.93696 0.93125 1.12146 1.20654 0.97749 0.94845 0.87688 1.60521 1.51206 1.04598 1.15172 1.23084 0.99267 0.96118 0.94037 1.21991 0.77872 0.90592 0.88396 1.93013 1.45333 1.96097 1.83370 1.92985 1.76673 1.65433 1.83801 1.20656 0.98439 0.91729 0.97712 1.20846 0.92713 0.98676 1.08809 0.94589 0.91433 0.92619 0.95178 0.94637 0.92708 0.86828 0.87250 0.90878 0.94966 0.82994 0.92446 0.88161 0.87276 0.87429 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.84 0.61 2.34 16 2 N -0.61 -13.28 2.99 -181.00 -0.54 -13.82 16 3 C 0.25 6.26 4.91 -5.19 -0.03 6.23 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.24 4.97 6.55 -83.79 -0.55 4.42 16 13 C -0.22 -3.94 9.21 -39.38 -0.36 -4.30 16 14 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 15 C -0.18 -2.74 5.39 -104.59 -0.56 -3.30 16 16 C 0.12 1.42 5.81 -4.97 -0.03 1.39 16 17 N -0.68 -8.17 6.41 -115.05 -0.74 -8.91 16 18 C 0.01 0.05 5.95 -3.82 -0.02 0.02 16 19 C 0.27 2.29 5.60 37.16 0.21 2.49 16 20 F -0.20 -2.34 17.26 2.25 0.04 -2.30 16 21 F -0.21 -2.34 16.81 2.25 0.04 -2.30 16 22 C -0.07 -1.12 9.69 -39.61 -0.38 -1.51 16 23 C -0.19 -3.81 9.21 -39.38 -0.36 -4.18 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 26 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 27 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 28 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.11 1.82 6.14 -52.49 -0.32 1.49 16 31 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.35 4.57 8.25 -39.29 -0.32 4.24 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.46 334.70 -8.10 -38.56 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.37 Total: 3.10 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.29 Total: -10.86 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.54 Total: -47.71 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.46 -8.10 -38.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809424516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.626 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds