Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50696 * 109.46934 * 270.00143 * 3 2 1 5 5 H 1.08001 * 120.00501 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99736 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00063 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47050 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47432 * 119.99696 * 8 6 4 11 11 H 1.48502 * 109.46640 * 239.99635 * 8 6 4 12 12 C 1.39682 * 119.99815 * 180.02562 * 2 1 3 13 13 C 1.38908 * 120.07043 * 359.97438 * 12 2 1 14 14 C 1.38113 * 119.92265 * 179.97438 * 13 12 2 15 15 C 1.38289 * 120.07093 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.92151 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47066 * 89.99963 * 16 15 14 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46916 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.46810 * 299.99521 * 19 18 17 21 21 F 1.39896 * 109.47039 * 59.99735 * 19 18 17 22 22 C 1.38284 * 120.15061 * 0.27277 * 15 14 13 23 23 C 1.38107 * 120.07495 * 359.45470 * 22 15 14 24 24 H 1.09006 * 109.47190 * 270.00125 * 1 2 3 25 25 H 1.09005 * 109.47273 * 29.99773 * 1 2 3 26 26 H 1.08999 * 109.47518 * 150.00002 * 1 2 3 27 27 H 1.08992 * 109.47000 * 30.00031 * 3 2 1 28 28 H 1.08998 * 109.46696 * 150.00317 * 3 2 1 29 29 H 0.96998 * 120.00344 * 180.02562 * 7 6 4 30 30 H 1.07999 * 120.04104 * 359.95514 * 13 12 2 31 31 H 1.07994 * 119.96170 * 179.97438 * 14 13 12 32 32 H 1.09001 * 109.47558 * 330.00127 * 16 15 14 33 33 H 1.08998 * 109.47216 * 209.99789 * 16 15 14 34 34 H 1.00901 * 110.99869 * 56.04737 * 17 16 15 35 35 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 36 36 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 37 37 H 1.09006 * 109.46835 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.96155 * 179.70462 * 22 15 14 39 39 H 1.08001 * 120.03692 * 180.27771 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8007 4.7381 -3.6666 11 1 4.9002 3.5246 -3.6679 12 6 2.1633 -1.2097 -0.0005 13 6 1.4702 -2.4135 -0.0005 14 6 2.1638 -3.6078 -0.0016 15 6 3.5467 -3.6060 -0.0021 16 6 4.3001 -4.9111 -0.0027 17 7 4.5444 -5.3349 -1.3880 18 6 5.2780 -6.6070 -1.4277 19 6 5.5136 -7.0145 -2.8835 20 9 4.2825 -7.1659 -3.5305 21 9 6.2615 -6.0245 -3.5297 22 6 4.2397 -2.4094 0.0041 23 6 3.5524 -1.2115 -0.0005 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 4.0312 4.4434 -0.8503 30 1 0.3902 -2.4156 0.0006 31 1 1.6256 -4.5441 -0.0012 32 1 3.7112 -5.6709 0.5111 33 1 5.2527 -4.7810 0.5107 34 1 5.0332 -4.6190 -1.9043 35 1 6.2375 -6.4890 -0.9240 36 1 4.6955 -7.3783 -0.9238 37 1 6.0576 -7.9587 -2.9130 38 1 5.3197 -2.4116 0.0085 39 1 4.0943 -0.2773 -0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809424516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -92.675037 kcal Electronic energy + Delta-G solvation = -21706.159901 eV Core-core repulsion = 18090.241911 eV Total energy + Delta-G solvation = -3615.917989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.75335 -47.79482 -40.46046 -37.95979 -36.39953 -34.74685 -32.01866 -31.89046 -29.74383 -29.24454 -26.95715 -25.51470 -23.69412 -23.11981 -22.89044 -21.05206 -18.64981 -18.37714 -18.27160 -18.12045 -17.51786 -16.90750 -16.35650 -15.96868 -15.72491 -15.40257 -15.25413 -14.99096 -14.71058 -14.42735 -14.28912 -14.18891 -14.09645 -13.77813 -13.23428 -13.17657 -13.08497 -13.04958 -12.85760 -12.65568 -12.55760 -12.24537 -12.11988 -11.75567 -11.56747 -11.41294 -10.65692 -10.43212 -9.67467 -9.41456 -8.37601 -7.81410 -6.38705 0.70439 0.82576 1.34917 1.36808 1.49192 2.33470 2.62758 2.91405 3.04816 3.08930 3.37412 3.51635 3.73870 4.03363 4.11192 4.17118 4.25284 4.40969 4.48801 4.61984 4.63667 4.70471 4.70950 4.75540 4.86389 4.91664 5.00952 5.12391 5.19563 5.32762 5.58309 5.65453 5.69456 5.89158 5.96984 6.06235 6.21770 6.28791 6.49318 6.81991 6.92859 7.33357 8.82089 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.003803 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.702747 B = 7360.925162 C = 8387.849802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.542 4.542 5 H 0.047 0.953 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.212 3.788 13 C -0.220 4.220 14 C -0.048 4.048 15 C -0.164 4.164 16 C 0.123 3.877 17 N -0.701 5.701 18 C 0.006 3.994 19 C 0.255 3.745 20 F -0.219 7.219 21 F -0.227 7.227 22 C -0.068 4.068 23 C -0.218 4.218 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.267 0.733 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.341 0.659 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.157 0.843 38 H 0.124 0.876 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -22.569 1.105 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.581 4.581 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.108 3.892 13 C -0.242 4.242 14 C -0.067 4.067 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.333 5.333 18 C -0.123 4.123 19 C 0.202 3.798 20 F -0.200 7.200 21 F -0.208 7.208 22 C -0.087 4.087 23 C -0.240 4.240 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.174 0.826 38 H 0.142 0.858 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.871 -22.489 1.065 22.591 hybrid contribution 1.066 1.613 -0.712 2.061 sum 2.937 -20.875 0.354 21.084 Atomic orbital electron populations 1.21605 0.79421 1.02498 1.01005 1.46978 1.05646 1.03739 1.77634 1.18772 0.91086 0.80260 0.95387 1.21809 1.36390 1.06522 0.93347 0.93443 1.25760 0.95042 0.96284 1.01446 1.70036 1.39003 1.14820 1.32711 0.85464 0.78081 0.78188 0.79687 1.19714 1.19815 1.20205 1.18247 0.91697 0.86523 0.92782 1.20828 1.00094 0.90794 1.12520 1.20904 0.93559 0.97088 0.95191 1.19543 0.93993 0.94126 1.09011 1.20652 0.98246 0.93227 0.88316 1.60488 1.52401 1.05689 1.14715 1.23226 1.00252 0.94661 0.94208 1.22623 0.77256 0.92005 0.87949 1.92967 1.46957 1.96214 1.83893 1.92947 1.77050 1.66583 1.84249 1.20857 0.99381 0.91327 0.97137 1.20769 0.93204 0.98581 1.11495 0.92797 0.92537 0.90431 0.97211 0.97060 0.92350 0.85018 0.84110 0.88827 0.93614 0.84144 0.90421 0.86190 0.82594 0.85809 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.48 10.19 127.77 1.30 4.78 16 2 N -0.63 -28.31 2.99 -726.57 -2.17 -30.48 16 3 C 0.27 14.25 4.91 85.63 0.42 14.67 16 4 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.79 5.46 84.66 0.46 1.26 16 7 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.21 8.86 6.55 38.21 0.25 9.11 16 13 C -0.22 -7.45 9.21 22.40 0.21 -7.25 16 14 C -0.05 -1.41 9.69 22.25 0.22 -1.19 16 15 C -0.16 -4.68 5.39 -19.84 -0.11 -4.79 16 16 C 0.12 2.51 5.81 85.55 0.50 3.01 16 17 N -0.70 -14.71 6.41 -517.92 -3.32 -18.03 16 18 C 0.01 0.08 5.95 86.30 0.51 0.59 16 19 C 0.26 3.64 5.60 71.98 0.40 4.05 16 20 F -0.22 -4.75 17.26 44.97 0.78 -3.97 16 21 F -0.23 -4.73 16.81 44.97 0.76 -3.97 16 22 C -0.07 -2.29 9.69 22.25 0.22 -2.08 16 23 C -0.22 -9.23 9.21 22.40 0.21 -9.03 16 24 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.06 2.09 8.07 -2.38 -0.02 2.07 16 26 H 0.08 2.37 6.20 -2.39 -0.01 2.35 16 27 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 28 H 0.01 0.66 6.20 -2.39 -0.01 0.64 16 29 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.13 3.90 6.14 -2.91 -0.02 3.89 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.34 8.24 8.25 -89.69 -0.74 7.50 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.16 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.10 4.65 6.14 -2.91 -0.02 4.63 16 Total: -1.00 -68.71 334.70 3.49 -65.21 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.32 Total: 16.56 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.83 Total: -17.68 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -5.21 Total: -103.04 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 1.53 Total: -7.94 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.71 3.49 -65.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809424516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.460 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds