Wall clock time and date at job start Tue Mar 31 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34641 * 116.99728 * 2 1 4 4 O 1.21507 * 120.00560 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99719 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.63228 * 359.97438 * 5 3 2 7 7 C 1.53186 * 108.77993 * 126.40945 * 6 5 3 8 8 C 1.53044 * 109.33719 * 54.61805 * 7 6 5 9 9 C 1.53039 * 109.53940 * 298.68401 * 8 7 6 10 10 H 1.08999 * 109.49795 * 301.35230 * 9 8 7 11 11 N 1.46499 * 109.49915 * 181.28746 * 9 8 7 12 12 C 1.34777 * 120.00199 * 155.06856 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.50697 * 109.47491 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99437 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47099 * 59.99852 * 20 18 16 22 22 H 1.48497 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47165 * 300.00026 * 20 18 16 24 24 C 1.46927 * 120.62797 * 179.97438 * 5 3 2 25 25 H 1.08996 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47128 * 300.00035 * 1 2 3 27 27 H 1.09000 * 109.46636 * 59.99894 * 1 2 3 28 28 H 1.09001 * 109.58863 * 246.19934 * 6 5 3 29 29 H 1.09001 * 109.58989 * 6.61898 * 6 5 3 30 30 H 1.08999 * 109.50496 * 174.58341 * 7 6 5 31 31 H 1.08998 * 109.49730 * 294.65212 * 7 6 5 32 32 H 1.09004 * 109.48457 * 178.65127 * 8 7 6 33 33 H 1.08996 * 109.43325 * 58.69509 * 8 7 6 34 34 H 0.97000 * 119.99484 * 335.05953 * 11 9 8 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 37 37 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 38 38 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 39 39 H 0.97004 * 120.00291 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58286 * 113.80197 * 24 5 3 41 41 H 1.08998 * 109.58776 * 353.37777 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2229 0.0470 0.0017 7 6 5.2133 0.1124 -1.1652 8 6 6.0242 1.4068 -1.0696 9 6 5.0824 2.6092 -1.1665 10 1 4.5367 2.5688 -2.1092 11 7 5.8627 3.8476 -1.1058 12 6 5.3759 4.9783 -1.6545 13 8 4.2922 4.9704 -2.1989 14 6 6.1813 6.2508 -1.5974 15 6 5.4104 7.3740 -2.2937 16 6 6.2154 8.6466 -2.2362 17 1 7.1803 8.6537 -1.7511 18 6 5.7202 9.8018 -2.8028 19 7 4.5455 9.7931 -3.3940 20 14 6.7178 11.3795 -2.7308 21 1 8.0196 11.1737 -3.4152 22 1 5.9696 12.4697 -3.4067 23 1 6.9572 11.7496 -1.3127 24 6 4.0905 2.5720 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 4.7700 -0.0272 0.9415 29 1 3.5760 -0.8224 -0.1164 30 1 5.8870 -0.7432 -1.1190 31 1 4.6665 0.0944 -2.1079 32 1 6.7463 1.4445 -1.8853 33 1 6.5518 1.4346 -0.1163 34 1 6.7295 3.8538 -0.6706 35 1 6.3582 6.5225 -0.5567 36 1 7.1362 6.0993 -2.1007 37 1 5.2335 7.1023 -3.3344 38 1 4.4554 7.5254 -1.7905 39 1 4.1972 10.6058 -3.7930 40 1 4.6267 2.7041 0.9397 41 1 3.3563 3.3687 -0.1193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812495049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:40 Heat of formation + Delta-G solvation = -127.898073 kcal Electronic energy + Delta-G solvation = -22580.971801 eV Core-core repulsion = 19074.613941 eV Total energy + Delta-G solvation = -3506.357859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84406 -39.49611 -38.03140 -36.35902 -34.56377 -33.42126 -32.55275 -31.15005 -29.78869 -27.92757 -25.72260 -25.46643 -23.42471 -21.89910 -21.26656 -20.21437 -19.49452 -18.28215 -17.18722 -16.89462 -16.68497 -15.82663 -15.67201 -15.27302 -14.99969 -14.43796 -14.41620 -14.27058 -14.08620 -13.54691 -13.28156 -12.99606 -12.89736 -12.43550 -12.19084 -12.14982 -11.73618 -11.43011 -11.31219 -11.13484 -10.93465 -10.89055 -10.81777 -10.60610 -10.56894 -9.92521 -9.64183 -9.30773 -9.15145 -8.98536 -8.66972 -8.28996 -5.92910 -3.97660 1.92699 2.69120 3.24918 3.36310 3.39779 3.41799 3.45153 3.74351 4.48202 4.49519 4.55195 4.59908 4.81697 4.94769 5.03658 5.04073 5.14526 5.22303 5.30034 5.41697 5.44691 5.46863 5.57778 5.63383 5.74304 5.86404 6.04697 6.12211 6.17437 6.24626 6.26219 6.71306 6.91582 7.12846 7.76877 7.86851 7.89673 8.10587 8.13898 8.41321 8.78383 9.10892 9.65705 11.17958 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.003160 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.328392 B = 8857.788495 C = 9665.628521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.561 6.561 5 N -0.592 5.592 6 C 0.110 3.890 7 C -0.132 4.132 8 C -0.128 4.128 9 C 0.132 3.868 10 H 0.091 0.909 11 N -0.739 5.739 12 C 0.508 3.492 13 O -0.527 6.527 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -25.235 8.719 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.449 6.449 5 N -0.333 5.333 6 C -0.012 4.012 7 C -0.171 4.171 8 C -0.166 4.166 9 C 0.025 3.975 10 H 0.109 0.891 11 N -0.393 5.393 12 C 0.297 3.703 13 O -0.401 6.401 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.018 -24.804 8.205 26.126 hybrid contribution 0.809 0.899 0.243 1.234 sum 0.828 -23.905 8.448 25.367 Atomic orbital electron populations 1.23195 0.74464 1.03286 1.02951 1.86196 1.24129 1.31128 1.87288 1.18040 0.83171 0.82171 0.76556 1.91058 1.64004 1.34797 1.55037 1.46815 1.01910 1.08322 1.76258 1.21774 0.93905 0.86698 0.98858 1.21900 0.98134 0.97868 0.99183 1.21828 0.98067 0.93539 1.03145 1.21127 0.92516 0.84359 0.99468 0.89121 1.46196 1.22600 1.09107 1.61390 1.21667 0.87042 0.85133 0.76469 1.90708 1.21787 1.85135 1.42484 1.21866 0.99654 0.92322 1.03042 1.18899 0.95174 0.89941 0.96090 1.21180 1.04109 0.94460 1.36885 0.92665 1.25028 0.95015 0.98994 0.95356 1.69992 1.17604 1.28217 1.36964 0.86651 0.80084 0.83005 0.78165 1.20274 1.21301 1.20262 1.22128 0.96159 0.83804 0.98593 0.88046 0.91865 0.91722 0.91000 0.88869 0.89880 0.90993 0.90542 0.91016 0.76710 0.90175 0.90203 0.95842 0.95772 0.92889 0.90863 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.56 101.05 1.07 1.54 16 2 O -0.37 -4.23 9.20 -40.33 -0.37 -4.60 16 3 C 0.65 9.25 8.43 54.06 0.46 9.71 16 4 O -0.56 -10.35 15.54 -19.28 -0.30 -10.65 16 5 N -0.59 -7.06 2.97 -178.58 -0.53 -7.59 16 6 C 0.11 0.85 6.45 -3.72 -0.02 0.83 16 7 C -0.13 -0.90 6.08 -26.61 -0.16 -1.07 16 8 C -0.13 -1.01 5.36 -26.69 -0.14 -1.15 16 9 C 0.13 1.62 2.60 -67.83 -0.18 1.45 16 10 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 11 N -0.74 -9.88 5.08 -53.70 -0.27 -10.15 16 12 C 0.51 9.74 7.80 -10.98 -0.09 9.65 16 13 O -0.53 -12.70 15.65 5.55 0.09 -12.61 16 14 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.12 1.52 6.01 -3.72 -0.02 1.49 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.66 6.93 -51.93 -0.36 0.30 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 3.95 8.60 -40.82 -0.35 3.59 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.82 7.00 -51.93 -0.36 1.46 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -37.64 342.25 -6.79 -44.43 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.50 Total: -0.48 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 0.22 Total: 6.73 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.07 Total: -44.84 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.58 Total: -27.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.64 -6.79 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812495049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.468 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds