Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34641 * 116.99728 * 2 1 4 4 O 1.21507 * 120.00560 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99719 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.63228 * 359.97438 * 5 3 2 7 7 C 1.53186 * 108.77993 * 126.40945 * 6 5 3 8 8 C 1.53044 * 109.33719 * 54.61805 * 7 6 5 9 9 C 1.53039 * 109.53940 * 298.68401 * 8 7 6 10 10 H 1.08999 * 109.49795 * 301.35230 * 9 8 7 11 11 N 1.46499 * 109.49915 * 181.28746 * 9 8 7 12 12 C 1.34777 * 120.00199 * 155.06856 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.50697 * 109.47491 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99437 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47099 * 59.99852 * 20 18 16 22 22 H 1.48497 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47165 * 300.00026 * 20 18 16 24 24 C 1.46927 * 120.62797 * 179.97438 * 5 3 2 25 25 H 1.08996 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47128 * 300.00035 * 1 2 3 27 27 H 1.09000 * 109.46636 * 59.99894 * 1 2 3 28 28 H 1.09001 * 109.58863 * 246.19934 * 6 5 3 29 29 H 1.09001 * 109.58989 * 6.61898 * 6 5 3 30 30 H 1.08999 * 109.50496 * 174.58341 * 7 6 5 31 31 H 1.08998 * 109.49730 * 294.65212 * 7 6 5 32 32 H 1.09004 * 109.48457 * 178.65127 * 8 7 6 33 33 H 1.08996 * 109.43325 * 58.69509 * 8 7 6 34 34 H 0.97000 * 119.99484 * 335.05953 * 11 9 8 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 37 37 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 38 38 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 39 39 H 0.97004 * 120.00291 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58286 * 113.80197 * 24 5 3 41 41 H 1.08998 * 109.58776 * 353.37777 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2229 0.0470 0.0017 7 6 5.2133 0.1124 -1.1652 8 6 6.0242 1.4068 -1.0696 9 6 5.0824 2.6092 -1.1665 10 1 4.5367 2.5688 -2.1092 11 7 5.8627 3.8476 -1.1058 12 6 5.3759 4.9783 -1.6545 13 8 4.2922 4.9704 -2.1989 14 6 6.1813 6.2508 -1.5974 15 6 5.4104 7.3740 -2.2937 16 6 6.2154 8.6466 -2.2362 17 1 7.1803 8.6537 -1.7511 18 6 5.7202 9.8018 -2.8028 19 7 4.5455 9.7931 -3.3940 20 14 6.7178 11.3795 -2.7308 21 1 8.0196 11.1737 -3.4152 22 1 5.9696 12.4697 -3.4067 23 1 6.9572 11.7496 -1.3127 24 6 4.0905 2.5720 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 4.7700 -0.0272 0.9415 29 1 3.5760 -0.8224 -0.1164 30 1 5.8870 -0.7432 -1.1190 31 1 4.6665 0.0944 -2.1079 32 1 6.7463 1.4445 -1.8853 33 1 6.5518 1.4346 -0.1163 34 1 6.7295 3.8538 -0.6706 35 1 6.3582 6.5225 -0.5567 36 1 7.1362 6.0993 -2.1007 37 1 5.2335 7.1023 -3.3344 38 1 4.4554 7.5254 -1.7905 39 1 4.1972 10.6058 -3.7930 40 1 4.6267 2.7041 0.9397 41 1 3.3563 3.3687 -0.1193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812495049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = -156.920826 kcal Electronic energy + Delta-G solvation = -22582.230322 eV Core-core repulsion = 19074.613941 eV Total energy + Delta-G solvation = -3507.616380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87425 -40.85308 -39.13282 -37.43599 -35.83551 -35.51739 -33.49979 -32.98235 -31.01411 -28.74754 -27.64228 -26.31540 -24.66134 -23.22628 -22.57319 -21.36221 -20.82650 -19.20930 -18.80462 -18.22144 -17.73272 -17.44347 -17.00837 -16.59309 -16.42024 -15.76332 -15.69620 -15.17984 -15.09592 -14.66950 -14.42261 -14.22044 -14.16860 -13.88232 -13.77298 -13.24588 -13.05641 -12.78436 -12.66022 -12.51510 -12.18445 -12.05050 -11.90493 -11.87864 -11.73834 -11.63136 -11.59975 -11.32411 -10.74379 -10.57029 -10.41764 -9.74649 -8.17653 -6.32468 0.97812 1.41761 1.46914 1.54590 1.58684 1.71474 2.21944 2.44680 2.89570 3.15106 3.64467 3.75584 3.93548 3.97589 4.10934 4.17740 4.30269 4.31281 4.45108 4.51629 4.53964 4.57650 4.64535 4.70448 4.74224 4.90023 5.00614 5.07607 5.13822 5.20046 5.25475 5.35518 5.48215 5.55308 5.62943 5.85615 6.14657 6.17154 6.62715 6.86588 7.08988 7.36239 7.38492 8.95009 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.003160 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.328392 B = 8857.788495 C = 9665.628521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.638 3.362 4 O -0.617 6.617 5 N -0.588 5.588 6 C 0.104 3.896 7 C -0.127 4.127 8 C -0.117 4.117 9 C 0.133 3.867 10 H 0.050 0.950 11 N -0.708 5.708 12 C 0.509 3.491 13 O -0.590 6.590 14 C -0.117 4.117 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.940 5.940 20 Si 0.976 3.024 21 H -0.260 1.260 22 H -0.289 1.289 23 H -0.262 1.262 24 C 0.119 3.881 25 H 0.145 0.855 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.423 0.577 35 H 0.107 0.893 36 H 0.110 0.890 37 H -0.020 1.020 38 H -0.023 1.023 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -27.239 10.490 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.277 6.277 3 C 0.393 3.607 4 O -0.508 6.508 5 N -0.329 5.329 6 C -0.016 4.016 7 C -0.165 4.165 8 C -0.155 4.155 9 C 0.027 3.973 10 H 0.068 0.932 11 N -0.363 5.363 12 C 0.298 3.702 13 O -0.469 6.469 14 C -0.157 4.157 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.800 3.200 21 H -0.184 1.184 22 H -0.215 1.215 23 H -0.186 1.186 24 C -0.004 4.004 25 H 0.163 0.837 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.128 0.872 37 H -0.002 1.002 38 H -0.004 1.004 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.727 -26.901 10.021 28.948 hybrid contribution -0.379 1.415 -0.302 1.496 sum 3.348 -25.487 9.719 27.481 Atomic orbital electron populations 1.23514 0.73016 1.05835 1.02192 1.86211 1.25505 1.29162 1.86797 1.18392 0.83946 0.82249 0.76148 1.91022 1.65459 1.36762 1.57603 1.46985 1.01478 1.09354 1.75040 1.22162 0.93918 0.84771 1.00762 1.21924 0.98194 0.98586 0.97835 1.21836 0.97130 0.91165 1.05347 1.21222 0.93308 0.85531 0.97271 0.93152 1.45813 1.23196 1.07875 1.59379 1.21491 0.86000 0.86429 0.76315 1.90700 1.24446 1.86149 1.45622 1.21634 0.99564 0.90503 1.03971 1.18694 0.94265 0.92925 0.93828 1.21704 1.04941 0.94859 1.36568 0.90265 1.26197 0.96158 1.03658 0.94705 1.70193 1.20061 1.29428 1.38344 0.85338 0.78466 0.77266 0.78949 1.18440 1.21507 1.18615 1.21970 0.95068 0.83238 1.00127 0.83687 0.92272 0.92993 0.88013 0.87996 0.85996 0.92824 0.89527 0.87762 0.73878 0.87445 0.87227 1.00183 1.00437 0.92912 0.87967 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 113.37 1.20 2.01 16 2 O -0.36 -8.11 9.20 -55.51 -0.51 -8.62 16 3 C 0.64 18.91 8.43 129.79 1.09 20.01 16 4 O -0.62 -24.61 15.54 19.82 0.31 -24.30 16 5 N -0.59 -13.76 2.97 -949.31 -2.82 -16.58 16 6 C 0.10 1.28 6.45 86.36 0.56 1.83 16 7 C -0.13 -1.28 6.08 30.67 0.19 -1.09 16 8 C -0.12 -1.41 5.36 30.62 0.16 -1.25 16 9 C 0.13 3.20 2.60 45.06 0.12 3.31 16 10 H 0.05 1.65 7.58 -2.39 -0.02 1.63 16 11 N -0.71 -18.06 5.08 -442.21 -2.25 -20.31 16 12 C 0.51 20.01 7.80 87.66 0.68 20.69 16 13 O -0.59 -30.71 15.65 -3.04 -0.05 -30.76 16 14 C -0.12 -4.69 5.64 29.85 0.17 -4.53 16 15 C 0.04 2.32 4.26 29.85 0.13 2.45 16 16 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 17 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 18 C -0.01 -0.59 5.46 84.65 0.46 -0.13 16 19 N -0.94 -61.31 13.29 21.44 0.28 -61.03 16 20 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 24 C 0.12 3.15 6.01 86.35 0.52 3.66 16 25 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 1.12 6.93 -2.39 -0.02 1.10 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.42 6.84 8.60 -92.71 -0.80 6.05 16 35 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 36 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 37 H -0.02 -1.32 8.10 -2.38 -0.02 -1.34 16 38 H -0.02 -1.50 8.10 -2.39 -0.02 -1.52 16 39 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.88 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -91.94 342.25 2.73 -89.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.23 Total: 9.58 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 5.51 Total: 15.84 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.78 Total: -97.92 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -0.25 Total: -63.68 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -91.94 2.73 -89.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812495049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.706 kcal (2) G-P(sol) polarization free energy of solvation -91.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds