Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34638 * 116.99776 * 2 1 4 4 O 1.21513 * 119.99956 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99672 * 180.27362 * 3 2 1 6 6 C 1.46927 * 120.63303 * 359.73157 * 5 3 2 7 7 C 1.53191 * 108.77041 * 233.58299 * 6 5 3 8 8 C 1.53040 * 109.31454 * 305.36017 * 7 6 5 9 9 C 1.53039 * 109.53579 * 61.36967 * 8 7 6 10 10 H 1.08997 * 109.49788 * 58.58384 * 9 8 7 11 11 N 1.46506 * 109.49946 * 178.65158 * 9 8 7 12 12 C 1.34776 * 119.99861 * 205.00109 * 11 9 8 13 13 O 1.21274 * 120.00336 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99622 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.46769 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46584 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99670 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46766 * 59.99950 * 20 18 16 22 22 H 1.48496 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46909 * 300.00282 * 20 18 16 24 24 C 1.46933 * 120.62803 * 179.44517 * 5 3 2 25 25 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47099 * 299.99376 * 1 2 3 27 27 H 1.09004 * 109.47111 * 60.00187 * 1 2 3 28 28 H 1.08996 * 109.58548 * 353.37064 * 6 5 3 29 29 H 1.09001 * 109.58489 * 113.65465 * 6 5 3 30 30 H 1.09001 * 109.50111 * 65.31901 * 7 6 5 31 31 H 1.09000 * 109.49122 * 185.38022 * 7 6 5 32 32 H 1.09002 * 109.46093 * 181.39062 * 8 7 6 33 33 H 1.09004 * 109.46219 * 301.34919 * 8 7 6 34 34 H 0.96998 * 120.00031 * 24.99300 * 11 9 8 35 35 H 1.09003 * 109.47131 * 300.00216 * 14 12 11 36 36 H 1.08997 * 109.46651 * 59.99930 * 14 12 11 37 37 H 1.09003 * 109.47436 * 299.99987 * 15 14 12 38 38 H 1.08997 * 109.47626 * 60.00485 * 15 14 12 39 39 H 0.97003 * 119.99887 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58923 * 246.20492 * 24 5 3 41 41 H 1.09000 * 109.58540 * 6.63008 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0056 6 6 4.2229 0.0469 -0.0058 7 6 5.2175 0.1163 1.1573 8 6 6.0280 1.4103 1.0536 9 6 5.0866 2.6130 1.1508 10 1 4.5445 2.5751 2.0957 11 7 5.8667 3.8513 1.0839 12 6 5.3826 4.9831 1.6325 13 8 4.3011 4.9767 2.1813 14 6 6.1853 6.2567 1.5641 15 6 5.4154 7.3826 2.2574 16 6 6.2179 8.6563 2.1884 17 1 7.1808 8.6622 1.6994 18 6 5.7227 9.8143 2.7496 19 7 4.5503 9.8071 3.3455 20 14 6.7176 11.3931 2.6648 21 1 6.9518 11.7547 1.2437 22 1 5.9697 12.4861 3.3364 23 1 8.0218 11.1934 3.3462 24 6 4.0905 2.5719 -0.0179 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.5765 -0.8220 0.1176 29 1 4.7646 -0.0315 -0.9484 30 1 4.6742 0.1019 2.1021 31 1 5.8907 -0.7398 1.1117 32 1 6.7536 1.4504 1.8661 33 1 6.5516 1.4353 0.0979 34 1 6.7316 3.8565 0.6448 35 1 7.1427 6.1101 2.0642 36 1 6.3572 6.5222 0.5210 37 1 4.4579 7.5293 1.7577 38 1 5.2440 7.1169 3.3005 39 1 4.2017 10.6219 3.7400 40 1 4.6235 2.6965 -0.9605 41 1 3.3566 3.3696 0.0974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812495050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -127.953061 kcal Electronic energy + Delta-G solvation = -22579.371307 eV Core-core repulsion = 19073.011063 eV Total energy + Delta-G solvation = -3506.360244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83785 -39.48765 -38.02697 -36.35670 -34.55816 -33.41984 -32.55151 -31.14422 -29.77612 -27.92757 -25.72119 -25.45890 -23.42560 -21.89458 -21.26185 -20.22026 -19.49409 -18.28044 -17.18591 -16.89432 -16.68340 -15.82113 -15.66960 -15.26947 -15.00070 -14.43628 -14.41628 -14.26880 -14.08104 -13.54201 -13.28033 -12.99312 -12.89606 -12.43686 -12.18959 -12.14891 -11.73917 -11.42929 -11.30932 -11.13429 -10.93390 -10.89016 -10.82263 -10.60541 -10.56842 -9.92464 -9.64093 -9.30872 -9.15103 -8.98400 -8.66514 -8.28944 -5.92910 -3.97596 1.92964 2.69074 3.25109 3.36327 3.39857 3.41842 3.45336 3.74315 4.48502 4.49556 4.55204 4.59745 4.80996 4.94756 5.03663 5.03970 5.14568 5.22313 5.29995 5.41701 5.44719 5.46966 5.57883 5.63466 5.74353 5.86096 6.04706 6.12266 6.17573 6.24690 6.26329 6.71441 6.91657 7.12915 7.76966 7.87025 7.89754 8.10635 8.13966 8.41352 8.78552 9.10961 9.65702 11.17962 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.003161 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.835797 B = 8855.732506 C = 9664.375694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.562 6.562 5 N -0.592 5.592 6 C 0.110 3.890 7 C -0.132 4.132 8 C -0.128 4.128 9 C 0.132 3.868 10 H 0.091 0.909 11 N -0.739 5.739 12 C 0.508 3.492 13 O -0.527 6.527 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.116 3.884 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -25.268 -8.640 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.449 6.449 5 N -0.333 5.333 6 C -0.012 4.012 7 C -0.171 4.171 8 C -0.166 4.166 9 C 0.026 3.974 10 H 0.109 0.891 11 N -0.393 5.393 12 C 0.297 3.703 13 O -0.401 6.401 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.008 -24.837 -8.120 26.131 hybrid contribution 0.806 0.898 -0.253 1.233 sum 0.814 -23.939 -8.373 25.374 Atomic orbital electron populations 1.23194 0.74465 1.03285 1.02949 1.86195 1.24128 1.31134 1.87287 1.18043 0.83179 0.82170 0.76556 1.91060 1.63996 1.34805 1.55047 1.46824 1.01908 1.08342 1.76253 1.21773 0.93897 0.86687 0.98878 1.21897 0.98101 0.97866 0.99194 1.21829 0.98075 0.93550 1.03135 1.21221 0.92470 0.84325 0.99430 0.89085 1.46199 1.22849 1.09078 1.61184 1.21663 0.86983 0.85141 0.76522 1.90705 1.21862 1.85195 1.42346 1.21868 0.99684 0.92307 1.03029 1.18900 0.95187 0.89905 0.96109 1.21184 1.04311 0.94278 1.36869 0.92664 1.25032 0.95019 0.99009 0.95340 1.69993 1.17713 1.28095 1.36970 0.86650 0.80075 0.83004 0.78172 1.20262 1.21300 1.20272 1.22226 0.96108 0.83789 0.98551 0.88049 0.91722 0.91866 0.88891 0.91005 0.90986 0.89884 0.90553 0.91015 0.76718 0.90214 0.90171 0.95771 0.95844 0.92890 0.90832 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.56 101.05 1.07 1.54 16 2 O -0.37 -4.23 9.21 -40.32 -0.37 -4.60 16 3 C 0.65 9.25 8.43 54.06 0.46 9.70 16 4 O -0.56 -10.35 15.54 -19.28 -0.30 -10.65 16 5 N -0.59 -7.06 2.97 -178.29 -0.53 -7.59 16 6 C 0.11 0.85 6.44 -3.71 -0.02 0.83 16 7 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 8 C -0.13 -1.01 5.35 -26.69 -0.14 -1.16 16 9 C 0.13 1.63 2.62 -67.58 -0.18 1.45 16 10 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 11 N -0.74 -9.88 5.08 -53.47 -0.27 -10.15 16 12 C 0.51 9.74 7.80 -10.98 -0.09 9.65 16 13 O -0.53 -12.70 15.64 5.56 0.09 -12.61 16 14 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 C 0.12 1.52 6.04 -3.48 -0.02 1.50 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.66 6.93 -51.93 -0.36 0.30 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.82 7.00 -51.93 -0.36 1.46 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -37.65 342.29 -6.79 -44.43 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.50 Total: -0.48 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 0.22 Total: 6.73 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.06 Total: -44.84 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.58 Total: -27.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.65 -6.79 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812495050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.518 kcal (2) G-P(sol) polarization free energy of solvation -37.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds