Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34638 * 116.99776 * 2 1 4 4 O 1.21513 * 119.99956 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99672 * 180.27362 * 3 2 1 6 6 C 1.46927 * 120.63303 * 359.73157 * 5 3 2 7 7 C 1.53191 * 108.77041 * 233.58299 * 6 5 3 8 8 C 1.53040 * 109.31454 * 305.36017 * 7 6 5 9 9 C 1.53039 * 109.53579 * 61.36967 * 8 7 6 10 10 H 1.08997 * 109.49788 * 58.58384 * 9 8 7 11 11 N 1.46506 * 109.49946 * 178.65158 * 9 8 7 12 12 C 1.34776 * 119.99861 * 205.00109 * 11 9 8 13 13 O 1.21274 * 120.00336 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99622 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.46769 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.46584 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99670 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99834 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46766 * 59.99950 * 20 18 16 22 22 H 1.48496 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46909 * 300.00282 * 20 18 16 24 24 C 1.46933 * 120.62803 * 179.44517 * 5 3 2 25 25 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47099 * 299.99376 * 1 2 3 27 27 H 1.09004 * 109.47111 * 60.00187 * 1 2 3 28 28 H 1.08996 * 109.58548 * 353.37064 * 6 5 3 29 29 H 1.09001 * 109.58489 * 113.65465 * 6 5 3 30 30 H 1.09001 * 109.50111 * 65.31901 * 7 6 5 31 31 H 1.09000 * 109.49122 * 185.38022 * 7 6 5 32 32 H 1.09002 * 109.46093 * 181.39062 * 8 7 6 33 33 H 1.09004 * 109.46219 * 301.34919 * 8 7 6 34 34 H 0.96998 * 120.00031 * 24.99300 * 11 9 8 35 35 H 1.09003 * 109.47131 * 300.00216 * 14 12 11 36 36 H 1.08997 * 109.46651 * 59.99930 * 14 12 11 37 37 H 1.09003 * 109.47436 * 299.99987 * 15 14 12 38 38 H 1.08997 * 109.47626 * 60.00485 * 15 14 12 39 39 H 0.97003 * 119.99887 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58923 * 246.20492 * 24 5 3 41 41 H 1.09000 * 109.58540 * 6.63008 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0056 6 6 4.2229 0.0469 -0.0058 7 6 5.2175 0.1163 1.1573 8 6 6.0280 1.4103 1.0536 9 6 5.0866 2.6130 1.1508 10 1 4.5445 2.5751 2.0957 11 7 5.8667 3.8513 1.0839 12 6 5.3826 4.9831 1.6325 13 8 4.3011 4.9767 2.1813 14 6 6.1853 6.2567 1.5641 15 6 5.4154 7.3826 2.2574 16 6 6.2179 8.6563 2.1884 17 1 7.1808 8.6622 1.6994 18 6 5.7227 9.8143 2.7496 19 7 4.5503 9.8071 3.3455 20 14 6.7176 11.3931 2.6648 21 1 6.9518 11.7547 1.2437 22 1 5.9697 12.4861 3.3364 23 1 8.0218 11.1934 3.3462 24 6 4.0905 2.5719 -0.0179 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.5765 -0.8220 0.1176 29 1 4.7646 -0.0315 -0.9484 30 1 4.6742 0.1019 2.1021 31 1 5.8907 -0.7398 1.1117 32 1 6.7536 1.4504 1.8661 33 1 6.5516 1.4353 0.0979 34 1 6.7316 3.8565 0.6448 35 1 7.1427 6.1101 2.0642 36 1 6.3572 6.5222 0.5210 37 1 4.4579 7.5293 1.7577 38 1 5.2440 7.1169 3.3005 39 1 4.2017 10.6219 3.7400 40 1 4.6235 2.6965 -0.9605 41 1 3.3566 3.3696 0.0974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812495050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = -156.972833 kcal Electronic energy + Delta-G solvation = -22580.629699 eV Core-core repulsion = 19073.011063 eV Total energy + Delta-G solvation = -3507.618636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86754 -40.84796 -39.12448 -37.43366 -35.83081 -35.51605 -33.49954 -32.97892 -30.99690 -28.74769 -27.64099 -26.30803 -24.66194 -23.22548 -22.56503 -21.36465 -20.82885 -19.20742 -18.80443 -18.21990 -17.73205 -17.44141 -17.00360 -16.59102 -16.41948 -15.76361 -15.69156 -15.17706 -15.09209 -14.66843 -14.41559 -14.22131 -14.16819 -13.88144 -13.76921 -13.24549 -13.05590 -12.78457 -12.66301 -12.51538 -12.18364 -12.04888 -11.90465 -11.87854 -11.74106 -11.62981 -11.59900 -11.32419 -10.74310 -10.57002 -10.41707 -9.74205 -8.17675 -6.32433 0.98192 1.41744 1.46919 1.54607 1.58526 1.71694 2.22197 2.44727 2.89589 3.15085 3.64929 3.74491 3.93638 3.97550 4.11212 4.17890 4.30282 4.31292 4.45048 4.51684 4.54052 4.57685 4.64519 4.70468 4.74073 4.90208 5.00726 5.07679 5.13848 5.20044 5.25622 5.35622 5.48271 5.55399 5.62985 5.85632 6.14753 6.17148 6.62873 6.86621 7.09076 7.36356 7.38498 8.94990 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.003161 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.835797 B = 8855.732506 C = 9664.375694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.638 3.362 4 O -0.617 6.617 5 N -0.588 5.588 6 C 0.104 3.896 7 C -0.127 4.127 8 C -0.117 4.117 9 C 0.133 3.867 10 H 0.050 0.950 11 N -0.708 5.708 12 C 0.509 3.491 13 O -0.590 6.590 14 C -0.117 4.117 15 C 0.041 3.959 16 C -0.543 4.543 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.940 5.940 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.260 1.260 24 C 0.119 3.881 25 H 0.145 0.855 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.423 0.577 35 H 0.109 0.891 36 H 0.107 0.893 37 H -0.023 1.023 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.103 0.897 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -27.276 -10.425 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.277 6.277 3 C 0.393 3.607 4 O -0.509 6.509 5 N -0.329 5.329 6 C -0.016 4.016 7 C -0.165 4.165 8 C -0.155 4.155 9 C 0.027 3.973 10 H 0.069 0.931 11 N -0.363 5.363 12 C 0.298 3.702 13 O -0.469 6.469 14 C -0.157 4.157 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.215 1.215 23 H -0.184 1.184 24 C -0.004 4.004 25 H 0.163 0.837 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.126 0.874 37 H -0.004 1.004 38 H -0.002 1.002 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.709 -26.938 -9.950 28.955 hybrid contribution -0.380 1.414 0.298 1.495 sum 3.329 -25.523 -9.652 27.490 Atomic orbital electron populations 1.23513 0.73019 1.05833 1.02191 1.86211 1.25504 1.29171 1.86796 1.18395 0.83956 0.82247 0.76149 1.91024 1.65453 1.36769 1.57616 1.46994 1.01474 1.09379 1.75033 1.22161 0.93903 0.84758 1.00788 1.21921 0.98159 0.98588 0.97844 1.21837 0.97135 0.91174 1.05340 1.21316 0.93265 0.85498 0.97241 0.93118 1.45816 1.23434 1.07845 1.59180 1.21487 0.85944 0.86443 0.76360 1.90697 1.24526 1.86207 1.45485 1.21636 0.99604 0.90468 1.03968 1.18695 0.94263 0.92917 0.93837 1.21707 1.05137 0.94682 1.36555 0.90264 1.26202 0.96151 1.03685 0.94690 1.70194 1.20164 1.29301 1.38361 0.85337 0.78469 0.77251 0.78956 1.18610 1.21506 1.18442 1.22072 0.95023 0.83211 1.00096 0.83691 0.92989 0.92277 0.88025 0.88014 0.92821 0.86002 0.89541 0.87758 0.73886 0.87240 0.87440 1.00438 1.00183 0.92913 0.87906 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -8.11 9.21 -55.47 -0.51 -8.62 16 3 C 0.64 18.91 8.43 129.79 1.09 20.00 16 4 O -0.62 -24.62 15.54 19.80 0.31 -24.31 16 5 N -0.59 -13.75 2.97 -948.40 -2.81 -16.57 16 6 C 0.10 1.28 6.44 86.36 0.56 1.83 16 7 C -0.13 -1.27 6.08 30.67 0.19 -1.09 16 8 C -0.12 -1.41 5.35 30.62 0.16 -1.25 16 9 C 0.13 3.20 2.62 45.21 0.12 3.32 16 10 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 11 N -0.71 -18.06 5.08 -441.47 -2.24 -20.31 16 12 C 0.51 20.01 7.80 87.66 0.68 20.69 16 13 O -0.59 -30.71 15.64 -3.01 -0.05 -30.76 16 14 C -0.12 -4.70 5.64 29.85 0.17 -4.53 16 15 C 0.04 2.32 4.26 29.85 0.13 2.45 16 16 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 17 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 18 C -0.01 -0.60 5.46 84.66 0.46 -0.14 16 19 N -0.94 -61.32 13.29 21.45 0.28 -61.03 16 20 Si 0.98 44.94 29.54 68.60 2.03 46.96 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 24 C 0.12 3.14 6.04 86.51 0.52 3.66 16 25 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.12 6.93 -2.39 -0.02 1.10 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.42 6.84 8.60 -92.71 -0.80 6.05 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 37 H -0.02 -1.50 8.10 -2.39 -0.02 -1.52 16 38 H -0.02 -1.32 8.10 -2.39 -0.02 -1.33 16 39 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.88 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -91.97 342.29 2.75 -89.22 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.23 Total: 9.59 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 5.51 Total: 15.82 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.77 Total: -97.91 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -0.25 Total: -63.69 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -91.97 2.75 -89.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812495050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.751 kcal (2) G-P(sol) polarization free energy of solvation -91.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds