Wall clock time and date at job start Tue Mar 31 2020 05:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00095 * 2 1 4 4 O 1.21588 * 120.00151 * 179.72667 * 3 2 1 5 5 N 1.34784 * 119.99935 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99893 * 179.72905 * 5 3 2 7 7 C 1.53003 * 109.46708 * 180.02562 * 6 5 3 8 8 C 1.50708 * 109.46949 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99690 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00050 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99915 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00185 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46940 * 60.00393 * 12 10 8 14 14 H 1.48496 * 109.47341 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47121 * 300.00922 * 12 10 8 16 16 C 1.46496 * 119.99931 * 179.97438 * 2 1 3 17 17 H 1.09003 * 110.36452 * 182.32883 * 16 2 1 18 18 C 1.54472 * 110.40521 * 60.00048 * 16 2 1 19 19 C 1.54359 * 103.04905 * 241.58413 * 18 16 2 20 20 C 1.52997 * 110.32565 * 136.71522 * 19 18 16 21 21 C 1.53000 * 110.32390 * 258.92239 * 19 18 16 22 22 O 1.45951 * 105.06988 * 17.81640 * 19 18 16 23 23 C 1.34563 * 108.40208 * 327.56497 * 22 19 18 24 24 O 1.20829 * 125.94478 * 213.36016 * 23 22 19 25 25 H 1.09000 * 109.47191 * 90.00312 * 1 2 3 26 26 H 1.09004 * 109.46976 * 210.00501 * 1 2 3 27 27 H 1.08998 * 109.47074 * 329.99904 * 1 2 3 28 28 H 0.97005 * 119.99846 * 359.72693 * 5 3 2 29 29 H 1.08998 * 109.47134 * 299.99552 * 6 5 3 30 30 H 1.08994 * 109.47397 * 59.99843 * 6 5 3 31 31 H 1.09000 * 109.47195 * 299.99415 * 7 6 5 32 32 H 1.08994 * 109.47584 * 59.99634 * 7 6 5 33 33 H 0.97000 * 120.00246 * 179.97438 * 11 10 8 34 34 H 1.09004 * 110.69903 * 359.97438 * 18 16 2 35 35 H 1.09004 * 110.70260 * 123.19167 * 18 16 2 36 36 H 1.09007 * 109.46877 * 60.00070 * 20 19 18 37 37 H 1.08999 * 109.47182 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47265 * 300.00653 * 20 19 18 39 39 H 1.08999 * 109.47133 * 59.99511 * 21 19 18 40 40 H 1.09000 * 109.47108 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47139 * 299.99878 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0050 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 0.0055 7 6 1.2032 4.7660 0.0042 8 6 1.9567 6.0712 0.0110 9 1 3.0367 6.0711 0.0162 10 6 1.2673 7.2652 0.0105 11 7 -0.0478 7.2652 0.0047 12 14 2.2012 8.8829 0.0197 13 1 3.0612 8.9648 -1.1882 14 1 1.2362 10.0116 0.0183 15 1 3.0488 8.9583 1.2367 16 6 2.1975 -1.2687 0.0006 17 1 3.2714 -1.0867 0.0420 18 6 1.8399 -2.0976 -1.2529 19 6 1.2106 -3.3754 -0.6579 20 6 -0.0426 -3.7661 -1.4436 21 6 2.2244 -4.5213 -0.6681 22 8 0.8592 -3.0219 0.7139 23 6 1.7599 -2.1308 1.1670 24 8 2.1520 -2.0353 2.3059 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.4950 2.3344 -0.0049 29 1 2.8201 3.6590 0.8984 30 1 2.8282 3.6628 -0.8815 31 1 0.5803 4.7104 -0.8886 32 1 0.5729 4.7062 0.8913 33 1 -0.5329 8.1052 0.0048 34 1 1.1186 -1.5659 -1.8735 35 1 2.7365 -2.3395 -1.8237 36 1 0.2242 -3.9523 -2.4840 37 1 -0.4755 -4.6686 -1.0120 38 1 -0.7697 -2.9555 -1.3946 39 1 3.0938 -4.2426 -0.0728 40 1 1.7663 -5.4154 -0.2451 41 1 2.5353 -4.7222 -1.6933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813711816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:48 Heat of formation + Delta-G solvation = -109.836737 kcal Electronic energy + Delta-G solvation = -22892.507070 eV Core-core repulsion = 19386.932409 eV Total energy + Delta-G solvation = -3505.574661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75459 -39.65624 -38.02986 -35.73108 -34.90796 -34.01972 -32.89194 -30.94880 -29.20983 -27.98193 -26.97361 -25.19720 -24.33234 -22.05118 -21.24070 -20.72225 -19.64261 -18.25724 -17.08895 -16.94329 -16.54559 -16.32787 -15.82671 -15.34028 -14.64399 -14.51154 -14.21410 -14.08293 -13.85234 -13.68649 -13.50460 -12.95521 -12.83787 -12.81186 -12.57078 -12.44829 -12.28356 -12.19244 -11.89825 -11.33253 -11.18439 -11.03270 -10.91344 -10.72195 -10.65161 -10.33372 -10.01869 -9.58254 -9.29570 -8.88527 -8.49891 -8.30528 -6.09681 -4.12485 1.50098 2.59716 3.06044 3.31552 3.34535 3.35298 3.38898 3.65176 3.95786 4.16896 4.19522 4.23102 4.44012 4.52608 4.86044 4.95053 5.03966 5.14252 5.20417 5.23070 5.26370 5.27465 5.37769 5.49552 5.53063 5.59852 5.68296 6.11516 6.32280 6.36695 6.41936 6.73940 6.90350 6.93579 7.18448 7.52885 7.61148 7.88867 8.16077 8.29782 8.80452 8.93555 9.52297 11.01976 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.003023 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.229928 B = 9260.554355 C = 9429.161378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.621 5.621 3 C 0.704 3.296 4 O -0.589 6.589 5 N -0.732 5.732 6 C 0.138 3.862 7 C 0.014 3.986 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.104 3.896 17 H 0.140 0.860 18 C -0.159 4.159 19 C 0.104 3.896 20 C -0.142 4.142 21 C -0.167 4.167 22 O -0.345 6.345 23 C 0.477 3.523 24 O -0.431 6.431 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.395 0.605 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -24.000 -5.415 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C 0.405 3.595 4 O -0.467 6.467 5 N -0.386 5.386 6 C 0.015 3.985 7 C -0.024 4.024 8 C -0.560 4.560 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.004 4.004 17 H 0.158 0.842 18 C -0.198 4.198 19 C 0.067 3.933 20 C -0.199 4.199 21 C -0.224 4.224 22 O -0.263 6.263 23 C 0.313 3.687 24 O -0.310 6.310 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.230 0.770 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.098 -23.861 -4.726 24.349 hybrid contribution -0.137 0.986 0.012 0.995 sum -1.235 -22.875 -4.714 23.388 Atomic orbital electron populations 1.21844 0.79303 1.03696 1.02280 1.46752 1.06241 1.03402 1.79733 1.15940 0.85381 0.80283 0.77854 1.90889 1.11529 1.85958 1.58300 1.45677 1.10101 1.05087 1.77766 1.21667 0.95750 0.80192 1.00862 1.19322 0.94230 0.91021 0.97821 1.21005 0.93254 0.90313 1.51461 0.92229 1.24991 0.94901 0.99408 0.94960 1.69944 1.06093 1.27002 1.50318 0.86558 0.79506 0.82592 0.78804 1.20097 1.21253 1.20089 1.22080 1.01403 0.84144 0.92765 0.84244 1.23454 1.03614 0.94928 0.97807 1.23018 0.96819 0.95067 0.78392 1.21882 0.95493 1.03029 0.99473 1.22307 0.98394 0.97954 1.03731 1.87349 1.47897 1.59937 1.31139 1.23588 0.75677 0.79907 0.89544 1.90726 1.50048 1.69062 1.21143 0.91925 0.90858 0.90420 0.77009 0.92583 0.92551 0.95947 0.95958 0.92784 0.87991 0.87839 0.89907 0.91089 0.91040 0.91742 0.90850 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.34 59.85 0.56 1.29 16 2 N -0.62 -8.43 2.79 -179.65 -0.50 -8.93 16 3 C 0.70 12.60 8.28 -86.91 -0.72 11.88 16 4 O -0.59 -12.61 15.70 5.29 0.08 -12.53 16 5 N -0.73 -13.15 5.42 -65.23 -0.35 -13.50 16 6 C 0.14 2.97 5.61 -4.04 -0.02 2.95 16 7 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 8 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 9 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 12 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.10 1.24 3.45 -67.92 -0.23 1.01 16 17 H 0.14 1.89 6.97 -51.93 -0.36 1.53 16 18 C -0.16 -1.21 5.82 -25.25 -0.15 -1.35 16 19 C 0.10 0.73 1.25 -89.91 -0.11 0.62 16 20 C -0.14 -0.68 8.82 37.16 0.33 -0.35 16 21 C -0.17 -0.93 8.70 37.16 0.32 -0.61 16 22 O -0.34 -3.74 9.90 -39.74 -0.39 -4.13 16 23 C 0.48 6.33 6.83 36.40 0.25 6.58 16 24 O -0.43 -7.41 18.00 -18.32 -0.33 -7.74 16 25 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 26 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 27 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 28 H 0.39 6.13 6.21 -40.82 -0.25 5.88 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.10 0.71 7.05 -51.93 -0.37 0.35 16 35 H 0.10 0.61 7.81 -51.93 -0.41 0.21 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.43 7.94 -51.93 -0.41 0.01 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -34.49 339.91 -7.22 -41.71 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.23 Total: -0.02 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.33 Total: 8.98 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.12 Total: -47.77 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.64 Total: -24.40 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.49 -7.22 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813711816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.125 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds