Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00095 * 2 1 4 4 O 1.21588 * 120.00151 * 179.72667 * 3 2 1 5 5 N 1.34784 * 119.99935 * 359.97438 * 3 2 1 6 6 C 1.46499 * 119.99893 * 179.72905 * 5 3 2 7 7 C 1.53003 * 109.46708 * 180.02562 * 6 5 3 8 8 C 1.50708 * 109.46949 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99690 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00050 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99915 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00185 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46940 * 60.00393 * 12 10 8 14 14 H 1.48496 * 109.47341 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47121 * 300.00922 * 12 10 8 16 16 C 1.46496 * 119.99931 * 179.97438 * 2 1 3 17 17 H 1.09003 * 110.36452 * 182.32883 * 16 2 1 18 18 C 1.54472 * 110.40521 * 60.00048 * 16 2 1 19 19 C 1.54359 * 103.04905 * 241.58413 * 18 16 2 20 20 C 1.52997 * 110.32565 * 136.71522 * 19 18 16 21 21 C 1.53000 * 110.32390 * 258.92239 * 19 18 16 22 22 O 1.45951 * 105.06988 * 17.81640 * 19 18 16 23 23 C 1.34563 * 108.40208 * 327.56497 * 22 19 18 24 24 O 1.20829 * 125.94478 * 213.36016 * 23 22 19 25 25 H 1.09000 * 109.47191 * 90.00312 * 1 2 3 26 26 H 1.09004 * 109.46976 * 210.00501 * 1 2 3 27 27 H 1.08998 * 109.47074 * 329.99904 * 1 2 3 28 28 H 0.97005 * 119.99846 * 359.72693 * 5 3 2 29 29 H 1.08998 * 109.47134 * 299.99552 * 6 5 3 30 30 H 1.08994 * 109.47397 * 59.99843 * 6 5 3 31 31 H 1.09000 * 109.47195 * 299.99415 * 7 6 5 32 32 H 1.08994 * 109.47584 * 59.99634 * 7 6 5 33 33 H 0.97000 * 120.00246 * 179.97438 * 11 10 8 34 34 H 1.09004 * 110.69903 * 359.97438 * 18 16 2 35 35 H 1.09004 * 110.70260 * 123.19167 * 18 16 2 36 36 H 1.09007 * 109.46877 * 60.00070 * 20 19 18 37 37 H 1.08999 * 109.47182 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47265 * 300.00653 * 20 19 18 39 39 H 1.08999 * 109.47133 * 59.99511 * 21 19 18 40 40 H 1.09000 * 109.47108 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47139 * 299.99878 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0050 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 0.0055 7 6 1.2032 4.7660 0.0042 8 6 1.9567 6.0712 0.0110 9 1 3.0367 6.0711 0.0162 10 6 1.2673 7.2652 0.0105 11 7 -0.0478 7.2652 0.0047 12 14 2.2012 8.8829 0.0197 13 1 3.0612 8.9648 -1.1882 14 1 1.2362 10.0116 0.0183 15 1 3.0488 8.9583 1.2367 16 6 2.1975 -1.2687 0.0006 17 1 3.2714 -1.0867 0.0420 18 6 1.8399 -2.0976 -1.2529 19 6 1.2106 -3.3754 -0.6579 20 6 -0.0426 -3.7661 -1.4436 21 6 2.2244 -4.5213 -0.6681 22 8 0.8592 -3.0219 0.7139 23 6 1.7599 -2.1308 1.1670 24 8 2.1520 -2.0353 2.3059 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.4950 2.3344 -0.0049 29 1 2.8201 3.6590 0.8984 30 1 2.8282 3.6628 -0.8815 31 1 0.5803 4.7104 -0.8886 32 1 0.5729 4.7062 0.8913 33 1 -0.5329 8.1052 0.0048 34 1 1.1186 -1.5659 -1.8735 35 1 2.7365 -2.3395 -1.8237 36 1 0.2242 -3.9523 -2.4840 37 1 -0.4755 -4.6686 -1.0120 38 1 -0.7697 -2.9555 -1.3946 39 1 3.0938 -4.2426 -0.0728 40 1 1.7663 -5.4154 -0.2451 41 1 2.5353 -4.7222 -1.6933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813711816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -132.768882 kcal Electronic energy + Delta-G solvation = -22893.501482 eV Core-core repulsion = 19386.932409 eV Total energy + Delta-G solvation = -3506.569073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.68482 -40.99773 -39.08080 -37.01532 -36.52793 -34.94388 -34.61143 -32.18259 -30.75954 -28.41152 -27.94407 -26.76236 -25.53133 -23.30882 -22.69101 -21.81722 -20.77386 -19.53679 -18.53931 -18.08937 -17.90364 -17.52563 -16.89575 -16.54938 -16.48567 -15.85487 -15.30254 -15.13116 -14.97224 -14.71684 -14.50295 -14.26958 -14.12063 -13.63966 -13.48941 -13.36280 -13.15727 -13.03184 -12.93034 -12.73558 -12.54917 -12.53215 -12.25635 -11.93509 -11.79780 -11.69277 -11.56912 -11.50439 -11.24979 -10.59977 -10.24915 -9.68930 -8.23665 -6.33908 0.44949 1.42187 1.44903 1.49706 1.54095 1.91965 2.18344 2.41018 2.72269 2.96031 3.11288 3.23350 3.54466 3.68399 3.97653 4.02702 4.07808 4.40450 4.48447 4.51046 4.56883 4.68366 4.72339 4.80033 4.80632 4.84920 4.88831 4.96167 5.18785 5.19897 5.25946 5.31418 5.47288 5.58457 5.62074 5.67122 5.80261 6.14439 6.16599 6.78208 6.82968 7.35225 7.39485 8.88079 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.003023 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.229928 B = 9260.554355 C = 9429.161378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.614 5.614 3 C 0.702 3.298 4 O -0.629 6.629 5 N -0.727 5.727 6 C 0.158 3.842 7 C 0.025 3.975 8 C -0.548 4.548 9 H 0.059 0.941 10 C 0.008 3.992 11 N -0.926 5.926 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.270 1.270 16 C 0.098 3.902 17 H 0.120 0.880 18 C -0.146 4.146 19 C 0.099 3.901 20 C -0.140 4.140 21 C -0.168 4.168 22 O -0.350 6.350 23 C 0.483 3.517 24 O -0.482 6.482 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.407 0.593 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 -24.972 -7.153 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.353 5.353 3 C 0.403 3.597 4 O -0.510 6.510 5 N -0.383 5.383 6 C 0.034 3.966 7 C -0.012 4.012 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.191 4.191 11 N -0.565 5.565 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.196 1.196 16 C -0.009 4.009 17 H 0.138 0.862 18 C -0.184 4.184 19 C 0.064 3.936 20 C -0.196 4.196 21 C -0.225 4.225 22 O -0.268 6.268 23 C 0.322 3.678 24 O -0.365 6.365 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.245 0.755 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.025 0.975 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.727 -24.893 -6.494 25.784 hybrid contribution -0.016 1.174 0.530 1.288 sum -1.743 -23.719 -5.964 24.520 Atomic orbital electron populations 1.22115 0.76958 1.04090 1.04491 1.46739 1.07626 1.02538 1.78383 1.16029 0.84947 0.81104 0.77582 1.90860 1.13410 1.86729 1.60015 1.45359 1.10579 1.04239 1.78108 1.21149 0.94734 0.80838 0.99833 1.19118 0.94185 0.91524 0.96418 1.21431 0.93632 0.91865 1.51679 0.92260 1.25851 0.95798 1.03029 0.94385 1.70046 1.07499 1.28079 1.50918 0.85507 0.78316 0.78166 0.79119 1.19186 1.20567 1.19555 1.22247 1.00260 0.83766 0.94667 0.86248 1.23506 1.05036 0.94144 0.95757 1.23450 0.98538 0.95123 0.76536 1.21954 0.94157 1.03143 1.00386 1.22375 0.97390 0.97379 1.05340 1.87352 1.46864 1.59066 1.33491 1.23752 0.75077 0.80021 0.88958 1.90694 1.52122 1.70506 1.23157 0.88725 0.89916 0.90642 0.75514 0.94049 0.93161 0.96923 0.97527 0.92515 0.86528 0.85695 0.87305 0.90808 0.90917 0.93257 0.90514 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.34 127.77 1.19 2.39 16 2 N -0.61 -16.17 2.79 -840.54 -2.34 -18.51 16 3 C 0.70 25.14 8.28 179.05 1.48 26.63 16 4 O -0.63 -27.49 15.70 -3.99 -0.06 -27.56 16 5 N -0.73 -26.13 5.42 -478.53 -2.59 -28.72 16 6 C 0.16 6.94 5.61 86.38 0.48 7.43 16 7 C 0.03 1.27 5.09 29.85 0.15 1.42 16 8 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.01 0.46 5.46 84.65 0.46 0.92 16 11 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 12 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 C 0.10 2.29 3.45 45.00 0.16 2.44 16 17 H 0.12 3.32 6.97 -2.39 -0.02 3.30 16 18 C -0.15 -1.82 5.82 31.56 0.18 -1.64 16 19 C 0.10 1.13 1.25 -10.33 -0.01 1.12 16 20 C -0.14 -0.81 8.82 71.98 0.64 -0.18 16 21 C -0.17 -1.47 8.70 71.98 0.63 -0.84 16 22 O -0.35 -7.14 9.90 -55.09 -0.55 -7.69 16 23 C 0.48 12.87 6.83 71.49 0.49 13.36 16 24 O -0.48 -17.24 18.00 21.54 0.39 -16.86 16 25 H 0.09 1.19 7.96 -2.39 -0.02 1.17 16 26 H 0.08 1.40 6.57 -2.38 -0.02 1.39 16 27 H 0.07 1.45 6.37 -2.39 -0.02 1.43 16 28 H 0.41 12.46 6.21 -92.70 -0.58 11.88 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 34 H 0.12 1.17 7.05 -2.39 -0.02 1.15 16 35 H 0.12 1.08 7.81 -2.38 -0.02 1.06 16 36 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 37 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 0.59 7.94 -2.39 -0.02 0.58 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -76.27 339.91 3.69 -72.57 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.46 Total: 12.27 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.08 Total: 22.66 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -4.65 Total: -101.02 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.22 Total: -52.10 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.27 3.69 -72.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813711816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.195 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds