Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 120.00039 * 2 1 4 4 O 1.21582 * 119.99819 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99734 * 0.02562 * 3 2 1 6 6 C 1.46503 * 119.99452 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46874 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47178 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99830 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47048 * 90.00021 * 12 10 8 14 14 H 1.48497 * 109.47126 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47077 * 330.00092 * 12 10 8 16 16 C 1.46496 * 119.99860 * 179.97438 * 2 1 3 17 17 H 1.09003 * 110.36499 * 183.40016 * 16 2 1 18 18 C 1.54473 * 110.40819 * 305.73595 * 16 2 1 19 19 C 1.54368 * 103.04594 * 119.16007 * 18 16 2 20 20 C 1.52996 * 110.32127 * 136.72049 * 19 18 16 21 21 C 1.53004 * 110.32166 * 258.92189 * 19 18 16 22 22 O 1.45949 * 105.07163 * 17.81725 * 19 18 16 23 23 C 1.34559 * 108.40037 * 327.56295 * 22 19 18 24 24 O 1.20833 * 125.94388 * 213.36738 * 23 22 19 25 25 H 1.09000 * 109.46572 * 85.42456 * 1 2 3 26 26 H 1.08995 * 109.47642 * 205.42444 * 1 2 3 27 27 H 1.08996 * 109.46962 * 325.42909 * 1 2 3 28 28 H 0.97001 * 120.00458 * 359.72131 * 5 3 2 29 29 H 1.09004 * 109.47314 * 299.99452 * 6 5 3 30 30 H 1.09001 * 109.47347 * 59.99684 * 6 5 3 31 31 H 1.09004 * 109.46735 * 299.99846 * 7 6 5 32 32 H 1.09001 * 109.47359 * 59.99731 * 7 6 5 33 33 H 0.97003 * 119.99448 * 180.02562 * 11 10 8 34 34 H 1.08995 * 110.69775 * 237.54810 * 18 16 2 35 35 H 1.09001 * 110.69694 * 0.59253 * 18 16 2 36 36 H 1.08997 * 109.47234 * 59.99602 * 20 19 18 37 37 H 1.09004 * 109.47055 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47276 * 299.99751 * 20 19 18 39 39 H 1.09000 * 109.47147 * 66.05467 * 21 19 18 40 40 H 1.08996 * 109.47041 * 186.06041 * 21 19 18 41 41 H 1.09001 * 109.47037 * 306.05589 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1976 3.6031 0.0011 7 6 1.2034 4.7660 0.0010 8 6 1.9569 6.0711 0.0009 9 1 3.0369 6.0711 0.0014 10 6 1.2675 7.2652 0.0003 11 7 1.9252 8.4041 0.0007 12 14 -0.6005 7.2652 -0.0013 13 1 -1.0966 7.2653 1.3985 14 1 -1.0949 8.4777 -0.7018 15 1 -1.0949 6.0527 -0.7016 16 6 2.1975 -1.2687 0.0006 17 1 3.2706 -1.0872 0.0611 18 6 1.7345 -2.1574 1.1761 19 6 1.1795 -3.4115 0.4674 20 6 1.6450 -4.6786 1.1875 21 6 -0.3488 -3.3597 0.4152 22 8 1.7346 -3.3620 -0.8815 23 6 1.8643 -2.0716 -1.2404 24 8 1.7365 -1.6299 -2.3578 25 1 -0.3632 0.0820 -1.0244 26 1 -0.3634 -0.9281 0.4412 27 1 -0.3633 0.8462 0.5831 28 1 0.4950 2.3344 -0.0032 29 1 2.8242 3.6605 0.8912 30 1 2.8243 3.6612 -0.8888 31 1 0.5771 4.7085 -0.8893 32 1 0.5763 4.7081 0.8907 33 1 1.4401 9.2442 0.0007 34 1 2.5767 -2.4181 1.8170 35 1 0.9540 -1.6595 1.7514 36 1 1.2868 -4.6639 2.2168 37 1 1.2454 -5.5545 0.6765 38 1 2.7342 -4.7200 1.1824 39 1 -0.6627 -2.5338 -0.2231 40 1 -0.7305 -4.2971 0.0107 41 1 -0.7418 -3.2113 1.4210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813711817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -103.394976 kcal Electronic energy + Delta-G solvation = -23017.622888 eV Core-core repulsion = 19512.327563 eV Total energy + Delta-G solvation = -3505.295325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80234 -39.73072 -38.02529 -35.93707 -35.02260 -33.92208 -32.84377 -31.13831 -29.65719 -28.22895 -26.97621 -25.29454 -24.35499 -22.05994 -21.07394 -20.76074 -19.74401 -18.27112 -17.17414 -17.00926 -16.74475 -16.39940 -15.92995 -15.45079 -14.87601 -14.47769 -14.30497 -14.14153 -13.94110 -13.72533 -13.47819 -13.17937 -12.97733 -12.84196 -12.68253 -12.61472 -12.54225 -12.14478 -11.80001 -11.48259 -11.40461 -11.23442 -10.97668 -10.69645 -10.39888 -10.30409 -9.98932 -9.82706 -9.33376 -8.93077 -8.63003 -8.43768 -6.11091 -4.11171 1.52845 2.61797 2.90806 3.24424 3.26484 3.32331 3.33707 3.62996 3.90211 4.08302 4.12730 4.16171 4.37398 4.44357 4.68422 4.82954 4.97954 5.06762 5.07757 5.18739 5.20909 5.21745 5.34272 5.38633 5.43292 5.54538 5.62974 5.96324 6.14354 6.22842 6.41069 6.56379 6.73758 6.83170 7.17380 7.20566 7.23729 7.66566 8.09315 8.44439 8.74131 8.93633 9.48876 11.01989 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034003 B = 0.003298 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.263299 B = 8486.785553 C = 8729.474910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.621 5.621 3 C 0.707 3.293 4 O -0.587 6.587 5 N -0.735 5.735 6 C 0.146 3.854 7 C -0.021 4.021 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.069 3.931 11 N -0.898 5.898 12 Si 0.882 3.118 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.102 3.898 17 H 0.147 0.853 18 C -0.159 4.159 19 C 0.104 3.896 20 C -0.142 4.142 21 C -0.173 4.173 22 O -0.345 6.345 23 C 0.473 3.527 24 O -0.429 6.429 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.393 0.607 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -27.110 5.245 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.360 5.360 3 C 0.408 3.592 4 O -0.465 6.465 5 N -0.390 5.390 6 C 0.024 3.976 7 C -0.059 4.059 8 C -0.560 4.560 9 H 0.095 0.905 10 C -0.133 4.133 11 N -0.537 5.537 12 Si 0.710 3.290 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.005 4.005 17 H 0.164 0.836 18 C -0.197 4.197 19 C 0.067 3.933 20 C -0.199 4.199 21 C -0.230 4.230 22 O -0.263 6.263 23 C 0.309 3.691 24 O -0.308 6.308 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.227 0.773 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.196 -26.816 4.563 27.898 hybrid contribution -1.510 0.264 -0.009 1.533 sum -7.706 -26.553 4.554 28.021 Atomic orbital electron populations 1.21987 0.79752 1.03606 1.02561 1.46699 1.06047 1.03617 1.79666 1.15879 0.85351 0.80228 0.77744 1.90899 1.11495 1.85917 1.58157 1.45629 1.09924 1.05246 1.78177 1.21444 0.95137 0.79349 1.01697 1.19796 0.95471 0.93845 0.96793 1.20909 0.95304 0.88206 1.51621 0.90547 1.25000 0.98481 0.95419 0.94391 1.69907 1.35859 0.97471 1.50421 0.86748 0.86081 0.77777 0.78440 1.20247 1.21263 1.19096 1.22131 1.01748 0.83956 0.92673 0.83559 1.23385 1.03872 0.94768 0.97708 1.23031 0.93999 0.97399 0.78848 1.21891 1.02845 0.95150 1.00062 1.22438 0.92906 1.03894 1.03716 1.87362 1.76995 1.27698 1.34200 1.23682 0.72978 0.82034 0.90398 1.90726 1.43122 1.72492 1.24459 0.92131 0.90427 0.90423 0.77266 0.91953 0.91949 0.95998 0.96481 0.92543 0.87768 0.87860 0.89876 0.91052 0.90924 0.91471 0.90650 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.15 59.85 0.55 1.13 16 2 N -0.62 -7.97 2.80 -179.65 -0.50 -8.47 16 3 C 0.71 12.19 8.28 -86.92 -0.72 11.47 16 4 O -0.59 -12.31 15.70 5.29 0.08 -12.23 16 5 N -0.74 -12.52 5.42 -65.22 -0.35 -12.88 16 6 C 0.15 3.03 5.61 -4.04 -0.02 3.01 16 7 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 8 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 9 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 12 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 16 C 0.10 1.17 3.44 -67.91 -0.23 0.93 16 17 H 0.15 1.88 6.97 -51.93 -0.36 1.52 16 18 C -0.16 -1.08 5.60 -25.24 -0.14 -1.23 16 19 C 0.10 0.68 1.25 -89.90 -0.11 0.57 16 20 C -0.14 -0.61 8.82 37.16 0.33 -0.29 16 21 C -0.17 -0.88 7.97 37.16 0.30 -0.58 16 22 O -0.34 -3.70 10.59 -39.72 -0.42 -4.12 16 23 C 0.47 6.15 7.31 36.40 0.27 6.42 16 24 O -0.43 -7.27 17.98 -18.32 -0.33 -7.59 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.50 3.82 -51.93 -0.20 0.30 16 27 H 0.08 0.63 6.62 -51.93 -0.34 0.28 16 28 H 0.39 5.58 6.31 -40.82 -0.26 5.32 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 32 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 0.56 7.82 -51.93 -0.41 0.16 16 35 H 0.10 0.59 6.43 -51.93 -0.33 0.25 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.41 5.96 -51.93 -0.31 0.10 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -35.70 331.50 -6.71 -42.41 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.94 Total: 0.44 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.34 Total: 7.74 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.08 Total: -47.95 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.67 Total: -23.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.70 -6.71 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813711817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.984 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds