Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34781 * 120.00039 * 2 1 4 4 O 1.21582 * 119.99819 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99734 * 0.02562 * 3 2 1 6 6 C 1.46503 * 119.99452 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46874 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47178 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99830 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.47048 * 90.00021 * 12 10 8 14 14 H 1.48497 * 109.47126 * 209.99873 * 12 10 8 15 15 H 1.48501 * 109.47077 * 330.00092 * 12 10 8 16 16 C 1.46496 * 119.99860 * 179.97438 * 2 1 3 17 17 H 1.09003 * 110.36499 * 183.40016 * 16 2 1 18 18 C 1.54473 * 110.40819 * 305.73595 * 16 2 1 19 19 C 1.54368 * 103.04594 * 119.16007 * 18 16 2 20 20 C 1.52996 * 110.32127 * 136.72049 * 19 18 16 21 21 C 1.53004 * 110.32166 * 258.92189 * 19 18 16 22 22 O 1.45949 * 105.07163 * 17.81725 * 19 18 16 23 23 C 1.34559 * 108.40037 * 327.56295 * 22 19 18 24 24 O 1.20833 * 125.94388 * 213.36738 * 23 22 19 25 25 H 1.09000 * 109.46572 * 85.42456 * 1 2 3 26 26 H 1.08995 * 109.47642 * 205.42444 * 1 2 3 27 27 H 1.08996 * 109.46962 * 325.42909 * 1 2 3 28 28 H 0.97001 * 120.00458 * 359.72131 * 5 3 2 29 29 H 1.09004 * 109.47314 * 299.99452 * 6 5 3 30 30 H 1.09001 * 109.47347 * 59.99684 * 6 5 3 31 31 H 1.09004 * 109.46735 * 299.99846 * 7 6 5 32 32 H 1.09001 * 109.47359 * 59.99731 * 7 6 5 33 33 H 0.97003 * 119.99448 * 180.02562 * 11 10 8 34 34 H 1.08995 * 110.69775 * 237.54810 * 18 16 2 35 35 H 1.09001 * 110.69694 * 0.59253 * 18 16 2 36 36 H 1.08997 * 109.47234 * 59.99602 * 20 19 18 37 37 H 1.09004 * 109.47055 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.47276 * 299.99751 * 20 19 18 39 39 H 1.09000 * 109.47147 * 66.05467 * 21 19 18 40 40 H 1.08996 * 109.47041 * 186.06041 * 21 19 18 41 41 H 1.09001 * 109.47037 * 306.05589 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1976 3.6031 0.0011 7 6 1.2034 4.7660 0.0010 8 6 1.9569 6.0711 0.0009 9 1 3.0369 6.0711 0.0014 10 6 1.2675 7.2652 0.0003 11 7 1.9252 8.4041 0.0007 12 14 -0.6005 7.2652 -0.0013 13 1 -1.0966 7.2653 1.3985 14 1 -1.0949 8.4777 -0.7018 15 1 -1.0949 6.0527 -0.7016 16 6 2.1975 -1.2687 0.0006 17 1 3.2706 -1.0872 0.0611 18 6 1.7345 -2.1574 1.1761 19 6 1.1795 -3.4115 0.4674 20 6 1.6450 -4.6786 1.1875 21 6 -0.3488 -3.3597 0.4152 22 8 1.7346 -3.3620 -0.8815 23 6 1.8643 -2.0716 -1.2404 24 8 1.7365 -1.6299 -2.3578 25 1 -0.3632 0.0820 -1.0244 26 1 -0.3634 -0.9281 0.4412 27 1 -0.3633 0.8462 0.5831 28 1 0.4950 2.3344 -0.0032 29 1 2.8242 3.6605 0.8912 30 1 2.8243 3.6612 -0.8888 31 1 0.5771 4.7085 -0.8893 32 1 0.5763 4.7081 0.8907 33 1 1.4401 9.2442 0.0007 34 1 2.5767 -2.4181 1.8170 35 1 0.9540 -1.6595 1.7514 36 1 1.2868 -4.6639 2.2168 37 1 1.2454 -5.5545 0.6765 38 1 2.7342 -4.7200 1.1824 39 1 -0.6627 -2.5338 -0.2231 40 1 -0.7305 -4.2971 0.0107 41 1 -0.7418 -3.2113 1.4210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813711817.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = -129.014251 kcal Electronic energy + Delta-G solvation = -23018.733823 eV Core-core repulsion = 19512.327563 eV Total energy + Delta-G solvation = -3506.406260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67798 -41.00026 -39.03057 -37.12007 -36.58760 -34.89422 -34.50332 -32.44890 -31.04283 -28.69473 -27.75942 -26.81474 -25.44899 -23.14596 -22.59587 -21.79714 -20.85011 -19.49240 -18.98958 -18.13268 -17.85861 -17.23382 -17.05056 -16.58534 -16.22380 -15.86068 -15.55964 -15.24232 -15.15673 -14.81812 -14.61750 -14.23239 -14.12456 -13.81575 -13.56006 -13.28772 -13.15355 -13.05653 -13.03331 -12.64002 -12.48535 -12.21948 -12.17798 -11.95338 -11.78649 -11.75346 -11.53464 -11.49030 -11.33008 -10.78195 -10.27095 -9.68257 -8.29394 -6.36886 0.54648 1.39372 1.42997 1.49380 1.54056 1.93249 2.14671 2.37733 2.76598 2.89773 3.05643 3.27378 3.52314 3.65513 3.92728 4.01839 4.10550 4.30362 4.41499 4.44126 4.60439 4.63271 4.70292 4.74343 4.78515 4.79455 4.88288 4.93913 5.07958 5.17423 5.24494 5.30736 5.39315 5.41271 5.62069 5.65413 5.71863 6.20070 6.23076 6.69734 6.84542 7.27482 7.41121 8.87511 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034003 B = 0.003298 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.263299 B = 8486.785553 C = 8729.474910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.612 5.612 3 C 0.702 3.298 4 O -0.632 6.632 5 N -0.726 5.726 6 C 0.163 3.837 7 C -0.011 4.011 8 C -0.539 4.539 9 H 0.028 0.972 10 C 0.003 3.997 11 N -0.951 5.951 12 Si 0.960 3.040 13 H -0.261 1.261 14 H -0.288 1.288 15 H -0.238 1.238 16 C 0.096 3.904 17 H 0.127 0.873 18 C -0.145 4.145 19 C 0.098 3.902 20 C -0.141 4.141 21 C -0.174 4.174 22 O -0.355 6.355 23 C 0.478 3.522 24 O -0.481 6.481 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.410 0.590 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -29.486 7.022 32.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.350 5.350 3 C 0.403 3.597 4 O -0.514 6.514 5 N -0.382 5.382 6 C 0.038 3.962 7 C -0.048 4.048 8 C -0.578 4.578 9 H 0.047 0.953 10 C -0.194 4.194 11 N -0.591 5.591 12 Si 0.782 3.218 13 H -0.186 1.186 14 H -0.214 1.214 15 H -0.161 1.161 16 C -0.011 4.011 17 H 0.145 0.855 18 C -0.183 4.183 19 C 0.062 3.938 20 C -0.198 4.198 21 C -0.231 4.231 22 O -0.273 6.273 23 C 0.317 3.683 24 O -0.364 6.364 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.248 0.752 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.680 -29.279 6.369 31.489 hybrid contribution -0.329 0.909 -0.547 1.111 sum -10.009 -28.370 5.823 30.642 Atomic orbital electron populations 1.22308 0.77115 1.06209 1.03031 1.46693 1.07606 1.02586 1.78144 1.16045 0.84907 0.81233 0.77474 1.90870 1.13702 1.86770 1.60027 1.45231 1.10547 1.04031 1.78376 1.20940 0.94571 0.80714 0.99925 1.19637 0.95430 0.91646 0.98119 1.21239 0.93778 0.91153 1.51593 0.95312 1.26096 1.05044 0.94579 0.93639 1.70082 1.38590 0.98486 1.51971 0.85522 0.78026 0.78759 0.79463 1.18594 1.21412 1.16071 1.22313 1.00855 0.83835 0.94109 0.85531 1.23457 1.05237 0.93611 0.96006 1.23496 0.95093 0.98366 0.76830 1.21966 1.02767 0.93793 1.01263 1.22516 0.91427 1.03727 1.05412 1.87360 1.76782 1.26305 1.36828 1.23904 0.71560 0.82849 0.89979 1.90692 1.45633 1.73702 1.26366 0.92643 0.87179 0.88685 0.75239 0.93388 0.94418 0.94766 0.94176 0.92318 0.85898 0.85681 0.87015 0.90897 0.91259 0.92607 0.90274 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 9.15 127.77 1.17 2.01 16 2 N -0.61 -14.88 2.80 -840.55 -2.35 -17.23 16 3 C 0.70 23.99 8.28 179.05 1.48 25.47 16 4 O -0.63 -27.29 15.70 -3.97 -0.06 -27.36 16 5 N -0.73 -23.89 5.42 -478.53 -2.59 -26.49 16 6 C 0.16 6.82 5.61 86.38 0.48 7.30 16 7 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 8 C -0.54 -30.94 9.66 25.60 0.25 -30.69 16 9 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 10 C 0.00 0.20 5.47 84.65 0.46 0.66 16 11 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 12 Si 0.96 42.08 27.47 68.60 1.88 43.96 16 13 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 14 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 16 C 0.10 2.10 3.44 45.01 0.16 2.25 16 17 H 0.13 3.33 6.97 -2.39 -0.02 3.31 16 18 C -0.15 -1.52 5.60 31.56 0.18 -1.34 16 19 C 0.10 0.99 1.25 -10.33 -0.01 0.97 16 20 C -0.14 -0.72 8.82 71.98 0.63 -0.08 16 21 C -0.17 -1.10 7.97 71.98 0.57 -0.53 16 22 O -0.35 -7.22 10.59 -55.05 -0.58 -7.81 16 23 C 0.48 12.37 7.31 71.49 0.52 12.89 16 24 O -0.48 -16.77 17.98 21.53 0.39 -16.38 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 0.96 3.82 -2.39 -0.01 0.96 16 27 H 0.09 1.15 6.62 -2.39 -0.02 1.14 16 28 H 0.41 10.52 6.31 -92.71 -0.58 9.93 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 32 H 0.04 1.63 7.57 -2.39 -0.02 1.61 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.12 0.89 7.82 -2.39 -0.02 0.87 16 35 H 0.13 0.81 6.43 -2.39 -0.02 0.80 16 36 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 0.50 5.96 -2.39 -0.01 0.49 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.11 0.04 8.09 -2.39 -0.02 0.03 16 Total: -1.00 -82.85 331.50 3.40 -79.44 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.41 Total: 12.52 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.02 Total: 18.57 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -4.65 Total: -102.95 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.26 Total: -51.54 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -82.85 3.40 -79.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813711817.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.571 kcal (2) G-P(sol) polarization free energy of solvation -82.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds