Wall clock time and date at job start Tue Mar 31 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47380 * 270.00093 * 3 2 1 5 5 H 1.48500 * 109.47063 * 30.00482 * 3 2 1 6 6 H 1.48505 * 109.46979 * 150.00001 * 3 2 1 7 7 C 1.37880 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99696 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46982 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47428 * 179.97438 * 10 9 7 12 12 O 1.45191 * 109.47316 * 179.97438 * 11 10 9 13 13 C 1.34805 * 117.00256 * 179.97438 * 12 11 10 14 14 O 1.21521 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.47146 * 119.99987 * 180.02562 * 13 12 11 16 16 F 1.35104 * 120.00334 * 0.02562 * 15 13 12 17 17 C 1.33197 * 119.99731 * 180.02562 * 15 13 12 18 18 C 1.50706 * 120.00181 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47238 * 240.00172 * 18 17 15 20 20 C 1.52996 * 109.46947 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47328 * 60.00057 * 20 19 18 22 22 C 1.53001 * 109.46886 * 300.00201 * 21 20 19 23 23 C 1.52996 * 109.47302 * 59.99782 * 22 21 20 24 24 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47453 * 59.99948 * 9 7 2 26 26 H 1.09003 * 109.47188 * 299.99125 * 9 7 2 27 27 H 1.09001 * 109.47006 * 59.99225 * 10 9 7 28 28 H 1.08994 * 109.46589 * 299.99861 * 10 9 7 29 29 H 1.09000 * 109.46802 * 59.99459 * 11 10 9 30 30 H 1.08998 * 109.47021 * 300.00085 * 11 10 9 31 31 H 1.08000 * 120.00516 * 0.02562 * 17 15 13 32 32 H 1.09001 * 109.46953 * 359.97438 * 18 17 15 33 33 H 1.09001 * 109.46832 * 299.99686 * 19 18 17 34 34 H 1.09004 * 109.47261 * 59.99705 * 19 18 17 35 35 H 1.08992 * 109.47554 * 299.99696 * 20 19 18 36 36 H 1.09000 * 109.46870 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47399 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47194 * 59.99524 * 21 20 19 39 39 H 1.09001 * 109.46652 * 299.99655 * 22 21 20 40 40 H 1.09004 * 109.47086 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46870 * 180.02562 * 23 22 21 42 42 H 1.08992 * 109.47554 * 60.00308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 8 6.0356 -4.0053 -0.0021 13 6 7.3720 -4.1819 -0.0028 14 8 8.1122 -3.2182 -0.0023 15 6 7.9344 -5.5417 -0.0042 16 9 7.1115 -6.6131 -0.0052 17 6 9.2549 -5.7161 -0.0043 18 6 9.8311 -7.1087 -0.0051 19 6 10.6925 -7.3050 1.2440 20 6 11.2768 -8.7190 1.2435 21 6 12.1381 -8.9145 -0.0059 22 6 11.2766 -8.7181 -1.2550 23 6 10.6923 -7.3041 -1.2545 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 3.6586 -3.1493 -0.8920 28 1 3.6580 -3.1512 0.8879 29 1 5.9149 -2.1234 0.8890 30 1 5.9149 -2.1217 -0.8909 31 1 9.9129 -4.8597 -0.0030 32 1 9.0203 -7.8373 -0.0050 33 1 11.5033 -6.5764 1.2443 34 1 10.0788 -7.1661 2.1341 35 1 10.4660 -9.4473 1.2433 36 1 11.8909 -8.8586 2.1331 37 1 12.5547 -9.9216 -0.0061 38 1 12.9491 -8.1862 -0.0058 39 1 10.4657 -9.4464 -1.2551 40 1 11.8903 -8.8569 -2.1451 41 1 10.0782 -7.1645 -2.1441 42 1 11.5032 -6.5759 -1.2543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814540095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:01 Heat of formation + Delta-G solvation = -157.476707 kcal Electronic energy + Delta-G solvation = -21577.276327 eV Core-core repulsion = 18049.715880 eV Total energy + Delta-G solvation = -3527.560447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.09266 -40.34170 -39.10501 -36.81983 -34.10962 -33.95464 -31.88364 -31.18288 -30.15950 -27.74715 -25.03360 -23.00119 -22.99647 -21.77023 -20.40887 -20.24924 -19.84000 -18.22543 -17.28113 -16.72816 -16.66259 -16.03861 -15.76286 -15.47438 -14.60375 -14.59151 -14.33081 -14.12008 -14.00937 -13.40644 -13.08932 -13.04971 -12.76181 -12.62392 -12.54922 -12.45264 -11.96724 -11.57070 -11.49143 -11.10569 -11.02021 -10.94946 -10.87554 -10.68697 -10.60460 -10.51626 -10.04688 -9.84880 -9.74913 -9.47010 -9.26256 -8.57720 -6.07692 -4.06892 0.65354 2.45563 2.57041 3.29028 3.36643 3.39720 4.06217 4.12359 4.24392 4.33301 4.41981 4.63857 4.67927 4.78619 4.82761 5.04716 5.07268 5.08486 5.19683 5.25186 5.28977 5.39385 5.39698 5.45134 5.60707 5.70250 5.70413 5.72126 5.79166 5.82365 5.87259 5.96813 6.05575 6.22252 6.35876 6.54515 6.75184 7.18779 7.30239 7.56355 7.72974 8.48928 8.96706 9.53496 11.05422 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.049486 B = 0.002367 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.683143 B =11827.056224 C =12036.063220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.065 3.935 12 O -0.343 6.343 13 C 0.490 3.510 14 O -0.495 6.495 15 C 0.027 3.973 16 F -0.124 7.124 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.110 4.110 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.942 -17.594 0.009 31.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.140 4.140 11 C -0.008 4.008 12 O -0.259 6.259 13 C 0.333 3.667 14 O -0.385 6.385 15 C 0.007 3.993 16 F -0.103 7.103 17 C -0.115 4.115 18 C -0.085 4.085 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.907 -17.189 0.013 31.091 hybrid contribution 0.128 0.992 -0.020 1.000 sum 26.035 -16.197 -0.008 30.662 Atomic orbital electron populations 1.69907 1.06274 1.26983 1.50781 1.25023 0.94776 0.99190 0.94472 0.86777 0.80357 0.83567 0.78588 1.20201 1.21268 1.18992 1.21046 0.88993 0.94702 1.51244 0.90761 1.19524 0.97595 0.90924 0.96707 1.21584 0.88443 1.00919 1.03057 1.23622 0.97357 0.77427 1.02380 1.86668 1.21805 1.34837 1.82585 1.21250 0.82321 0.89168 0.73935 1.90887 1.60744 1.40992 1.45837 1.18745 0.88277 0.81271 1.11004 1.91530 1.72188 1.52464 1.94117 1.24071 0.93125 1.01214 0.93082 1.20393 0.98893 0.92587 0.96651 1.21541 0.99073 0.97590 0.96598 1.21531 0.99514 0.96644 0.98002 1.21563 0.98164 1.01588 0.94584 1.21533 0.99514 0.96644 0.98001 1.21539 0.99070 0.97594 0.96594 0.92631 0.96228 0.96669 0.91386 0.91358 0.91161 0.91157 0.82859 0.89341 0.91304 0.91468 0.91738 0.91678 0.91981 0.91887 0.91739 0.91677 0.91466 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -2.06 5.53 -26.73 -0.15 -2.21 16 11 C 0.06 1.14 5.48 37.15 0.20 1.34 16 12 O -0.34 -5.81 10.18 -40.78 -0.41 -6.22 16 13 C 0.49 7.42 7.91 34.35 0.27 7.69 16 14 O -0.49 -8.17 16.02 -19.28 -0.31 -8.48 16 15 C 0.03 0.33 7.38 -37.73 -0.28 0.05 16 16 F -0.12 -1.60 16.00 2.25 0.04 -1.56 16 17 C -0.10 -0.89 8.36 -36.06 -0.30 -1.19 16 18 C -0.07 -0.50 2.45 -91.77 -0.23 -0.72 16 19 C -0.11 -0.70 5.19 -26.73 -0.14 -0.84 16 20 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 21 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 22 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 23 C -0.11 -0.70 5.19 -26.73 -0.14 -0.84 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 26 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.15 1.33 7.50 -52.49 -0.39 0.94 16 32 H 0.09 0.72 7.02 -51.93 -0.36 0.36 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -31.16 348.36 -8.14 -39.30 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -7.03 Total: -5.43 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -1.77 Total: -12.85 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.77 Total: -27.02 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.72 Total: -14.70 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.16 -8.14 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814540095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.179 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds