Wall clock time and date at job start Tue Mar 31 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47380 * 270.00093 * 3 2 1 5 5 H 1.48500 * 109.47063 * 30.00482 * 3 2 1 6 6 H 1.48505 * 109.46979 * 150.00001 * 3 2 1 7 7 C 1.37880 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99696 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46982 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47428 * 179.97438 * 10 9 7 12 12 O 1.45191 * 109.47316 * 179.97438 * 11 10 9 13 13 C 1.34805 * 117.00256 * 179.97438 * 12 11 10 14 14 O 1.21521 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.47146 * 119.99987 * 180.02562 * 13 12 11 16 16 F 1.35104 * 120.00334 * 0.02562 * 15 13 12 17 17 C 1.33197 * 119.99731 * 180.02562 * 15 13 12 18 18 C 1.50706 * 120.00181 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47238 * 240.00172 * 18 17 15 20 20 C 1.52996 * 109.46947 * 179.97438 * 19 18 17 21 21 C 1.53000 * 109.47328 * 60.00057 * 20 19 18 22 22 C 1.53001 * 109.46886 * 300.00201 * 21 20 19 23 23 C 1.52996 * 109.47302 * 59.99782 * 22 21 20 24 24 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47453 * 59.99948 * 9 7 2 26 26 H 1.09003 * 109.47188 * 299.99125 * 9 7 2 27 27 H 1.09001 * 109.47006 * 59.99225 * 10 9 7 28 28 H 1.08994 * 109.46589 * 299.99861 * 10 9 7 29 29 H 1.09000 * 109.46802 * 59.99459 * 11 10 9 30 30 H 1.08998 * 109.47021 * 300.00085 * 11 10 9 31 31 H 1.08000 * 120.00516 * 0.02562 * 17 15 13 32 32 H 1.09001 * 109.46953 * 359.97438 * 18 17 15 33 33 H 1.09001 * 109.46832 * 299.99686 * 19 18 17 34 34 H 1.09004 * 109.47261 * 59.99705 * 19 18 17 35 35 H 1.08992 * 109.47554 * 299.99696 * 20 19 18 36 36 H 1.09000 * 109.46870 * 179.97438 * 20 19 18 37 37 H 1.08992 * 109.47399 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47194 * 59.99524 * 21 20 19 39 39 H 1.09001 * 109.46652 * 299.99655 * 22 21 20 40 40 H 1.09004 * 109.47086 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46870 * 180.02562 * 23 22 21 42 42 H 1.08992 * 109.47554 * 60.00308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 8 6.0356 -4.0053 -0.0021 13 6 7.3720 -4.1819 -0.0028 14 8 8.1122 -3.2182 -0.0023 15 6 7.9344 -5.5417 -0.0042 16 9 7.1115 -6.6131 -0.0052 17 6 9.2549 -5.7161 -0.0043 18 6 9.8311 -7.1087 -0.0051 19 6 10.6925 -7.3050 1.2440 20 6 11.2768 -8.7190 1.2435 21 6 12.1381 -8.9145 -0.0059 22 6 11.2766 -8.7181 -1.2550 23 6 10.6923 -7.3041 -1.2545 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8752 -0.6796 -0.8895 27 1 3.6586 -3.1493 -0.8920 28 1 3.6580 -3.1512 0.8879 29 1 5.9149 -2.1234 0.8890 30 1 5.9149 -2.1217 -0.8909 31 1 9.9129 -4.8597 -0.0030 32 1 9.0203 -7.8373 -0.0050 33 1 11.5033 -6.5764 1.2443 34 1 10.0788 -7.1661 2.1341 35 1 10.4660 -9.4473 1.2433 36 1 11.8909 -8.8586 2.1331 37 1 12.5547 -9.9216 -0.0061 38 1 12.9491 -8.1862 -0.0058 39 1 10.4657 -9.4464 -1.2551 40 1 11.8903 -8.8569 -2.1451 41 1 10.0782 -7.1645 -2.1441 42 1 11.5032 -6.5759 -1.2543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814540095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:01 Heat of formation + Delta-G solvation = -172.882696 kcal Electronic energy + Delta-G solvation = -21577.944381 eV Core-core repulsion = 18049.715880 eV Total energy + Delta-G solvation = -3528.228501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02590 -41.56498 -39.65515 -38.09694 -35.97702 -34.69350 -33.90163 -31.64425 -30.94614 -29.47370 -26.18626 -24.47350 -23.46136 -22.67418 -22.11459 -20.90128 -20.71537 -19.32830 -19.03853 -18.16787 -17.96068 -16.97321 -16.57426 -16.35318 -16.27535 -15.57769 -15.25873 -15.06249 -14.99536 -14.81320 -14.25584 -14.01819 -13.97452 -13.76608 -13.59054 -13.22286 -13.08438 -12.89453 -12.65636 -12.27000 -12.10340 -12.02116 -12.00839 -11.78932 -11.70094 -11.46415 -11.39191 -11.36289 -11.19389 -11.10218 -10.78587 -10.29717 -8.31032 -6.36587 -0.29224 1.31581 1.36775 1.38601 1.48244 1.50322 2.35198 2.98170 3.03848 3.41172 3.70182 3.80656 3.84350 3.94547 3.95294 4.14643 4.20119 4.32417 4.36312 4.52677 4.54621 4.57591 4.62915 4.66257 4.69806 4.76118 4.91193 4.96278 5.10789 5.15184 5.18423 5.24628 5.25995 5.28305 5.39454 5.41448 5.41719 5.45925 5.58130 5.60351 6.24111 6.37167 6.71125 7.27766 8.85553 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.049486 B = 0.002367 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.683143 B =11827.056224 C =12036.063220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.033 0.967 9 C -0.008 4.008 10 C -0.095 4.095 11 C 0.073 3.927 12 O -0.356 6.356 13 C 0.491 3.509 14 O -0.512 6.512 15 C -0.004 4.004 16 F -0.133 7.133 17 C -0.051 4.051 18 C -0.068 4.068 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.217 -17.329 -0.004 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.045 4.045 10 C -0.132 4.132 11 C 0.000 4.000 12 O -0.272 6.272 13 C 0.336 3.664 14 O -0.403 6.403 15 C -0.025 4.025 16 F -0.112 7.112 17 C -0.071 4.071 18 C -0.087 4.087 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.183 0.817 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 29.201 -16.953 -0.001 33.766 hybrid contribution -0.863 0.763 -0.017 1.152 sum 28.338 -16.190 -0.018 32.637 Atomic orbital electron populations 1.70064 1.08342 1.28302 1.52288 1.26051 0.95696 1.03681 0.93973 0.85623 0.79541 0.77940 0.79347 1.18998 1.20910 1.16737 1.21395 0.91745 0.93327 1.50913 0.94865 1.19444 0.94271 0.93390 0.97431 1.21347 0.90711 0.98659 1.02525 1.23336 0.95240 0.78155 1.03235 1.86643 1.23290 1.34211 1.83105 1.21674 0.81363 0.90237 0.73107 1.90868 1.60682 1.41743 1.47006 1.18581 0.88830 0.79885 1.15171 1.91508 1.72579 1.52415 1.94680 1.24441 0.92020 1.02663 0.87956 1.20504 0.99100 0.91010 0.98049 1.21551 0.99035 0.98578 0.95524 1.21532 0.99567 0.95822 0.98704 1.21564 0.98060 1.02194 0.93949 1.21534 0.99567 0.95822 0.98703 1.21549 0.99032 0.98581 0.95519 0.92375 0.95343 0.95453 0.91991 0.92007 0.90347 0.90264 0.81680 0.90129 0.90303 0.91943 0.92181 0.90844 0.91328 0.91356 0.92182 0.90842 0.91940 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.95 44.07 27.47 68.60 1.88 45.95 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.54 -31.18 9.66 25.60 0.25 -30.94 16 8 H 0.03 2.13 7.99 -2.92 -0.02 2.11 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 11 C 0.07 2.48 5.48 71.98 0.39 2.87 16 12 O -0.36 -11.87 10.18 -57.16 -0.58 -12.45 16 13 C 0.49 14.43 7.91 70.16 0.56 14.99 16 14 O -0.51 -16.16 16.02 19.77 0.32 -15.85 16 15 C 0.00 -0.10 7.38 23.47 0.17 0.07 16 16 F -0.13 -3.39 16.00 44.97 0.72 -2.67 16 17 C -0.05 -0.86 8.36 24.55 0.21 -0.65 16 18 C -0.07 -0.88 2.45 -11.54 -0.03 -0.91 16 19 C -0.11 -1.15 5.19 30.59 0.16 -0.99 16 20 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 21 C -0.12 -0.93 5.92 30.59 0.18 -0.75 16 22 C -0.12 -1.06 5.92 30.59 0.18 -0.87 16 23 C -0.11 -1.15 5.19 30.59 0.16 -0.99 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.03 1.27 7.20 -2.39 -0.02 1.26 16 26 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.17 2.42 7.50 -2.91 -0.02 2.40 16 32 H 0.08 1.22 7.02 -2.39 -0.02 1.21 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.64 348.36 6.72 -60.92 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.93 Total: 6.05 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 3.16 Total: -22.29 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.27 Total: -28.30 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.72 Total: -2.67 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -67.64 6.72 -60.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814540095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.967 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds