Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99768 * 2 1 4 4 H 1.48504 * 109.47385 * 270.00530 * 3 2 1 5 5 H 1.48506 * 109.47165 * 30.00149 * 3 2 1 6 6 H 1.48496 * 109.47362 * 150.00200 * 3 2 1 7 7 C 1.37875 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47504 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47323 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99663 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00473 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99587 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47382 * 155.00007 * 15 14 12 17 17 C 1.52997 * 109.47493 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46880 * 300.00006 * 17 16 15 19 19 C 1.50706 * 109.47215 * 179.97438 * 18 17 16 20 20 O 1.20825 * 119.99859 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00295 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47228 * 60.00058 * 18 17 16 23 23 C 1.52996 * 109.46947 * 274.99987 * 15 14 12 24 24 H 0.96994 * 120.00492 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47093 * 59.99782 * 9 7 2 26 26 H 1.09003 * 109.46981 * 300.00023 * 9 7 2 27 27 H 1.09000 * 109.47355 * 59.99659 * 10 9 7 28 28 H 1.09003 * 109.46789 * 299.99857 * 10 9 7 29 29 H 0.97000 * 120.00025 * 359.97438 * 11 10 9 30 30 H 0.97008 * 120.00392 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.47205 * 35.00343 * 15 14 12 32 32 H 1.09003 * 109.47318 * 59.99674 * 16 15 14 33 33 H 1.09008 * 109.46908 * 300.00117 * 16 15 14 34 34 H 1.08997 * 109.47186 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.47116 * 59.99536 * 17 16 15 36 36 H 1.09000 * 109.47459 * 300.00106 * 18 17 16 37 37 H 0.96700 * 117.00196 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47766 * 59.99578 * 22 18 17 39 39 H 1.09005 * 109.47327 * 180.02562 * 22 18 17 40 40 H 1.09000 * 109.47091 * 299.99317 * 23 15 14 41 41 H 1.08997 * 109.47192 * 60.00121 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0018 13 8 3.4027 -6.0980 -0.0023 14 7 1.5130 -7.2651 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 6 1.3685 -9.6293 0.6076 17 6 2.1337 -10.9542 0.6081 18 6 2.4980 -11.3331 -0.8287 19 6 3.2523 -12.6378 -0.8283 20 8 3.4760 -13.2060 0.2143 21 8 3.6766 -13.1682 -1.9860 22 6 3.3752 -10.2378 -1.4383 23 6 2.6094 -8.9125 -1.4390 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 0.5429 -4.9308 -0.0011 30 1 0.5430 -7.2652 -0.0010 31 1 3.1563 -8.4277 0.5875 32 1 0.4577 -9.7356 0.0183 33 1 1.1093 -9.3595 1.6315 34 1 1.5086 -11.7346 1.0420 35 1 3.0443 -10.8476 1.1977 36 1 1.5875 -11.4396 -1.4184 37 1 4.1564 -14.0062 -1.9352 38 1 4.2857 -10.1311 -0.8487 39 1 3.6344 -10.5075 -2.4621 40 1 1.6986 -9.0188 -2.0283 41 1 3.2343 -8.1322 -1.8733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -155.057198 kcal Electronic energy + Delta-G solvation = -21946.226098 eV Core-core repulsion = 18438.690530 eV Total energy + Delta-G solvation = -3507.535567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95432 -39.80800 -38.12684 -36.48559 -34.89346 -34.07636 -32.80520 -31.15544 -30.44568 -28.96447 -25.06515 -24.07147 -23.08554 -21.62942 -20.89467 -20.50393 -20.14130 -18.41138 -17.91485 -17.13057 -16.48363 -16.28451 -15.99971 -15.18055 -14.74059 -14.52176 -14.45176 -14.10387 -13.93963 -13.56381 -13.36920 -13.12532 -12.69234 -12.53096 -12.28187 -11.94052 -11.87197 -11.62190 -11.49226 -11.17816 -11.03891 -10.85392 -10.76452 -10.62503 -10.53031 -10.30028 -9.90543 -9.54122 -9.25075 -8.99019 -8.47706 -8.23698 -6.08576 -4.11077 1.83017 2.64071 3.04423 3.30224 3.36385 3.41096 3.60186 4.19661 4.29666 4.39131 4.51881 4.68949 4.76223 4.83566 4.95444 5.09967 5.12641 5.14883 5.28562 5.39653 5.47301 5.67673 5.70605 5.79438 5.85888 6.01304 6.12269 6.13371 6.32571 6.41229 6.66219 6.79308 7.02054 7.26539 7.51513 7.58099 7.64370 7.90823 8.27122 8.46010 8.94002 9.02413 9.53631 11.03109 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054819 B = 0.002352 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.646928 B =11902.285921 C =12094.036894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.598 6.598 14 N -0.750 5.750 15 C 0.162 3.838 16 C -0.125 4.125 17 C -0.100 4.100 18 C -0.080 4.080 19 C 0.483 3.517 20 O -0.516 6.516 21 O -0.516 6.516 22 C -0.107 4.107 23 C -0.129 4.129 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.393 0.607 30 H 0.393 0.607 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 -25.499 -2.931 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.406 5.406 15 C 0.056 3.944 16 C -0.163 4.163 17 C -0.138 4.138 18 C -0.100 4.100 19 C 0.325 3.675 20 O -0.404 6.404 21 O -0.328 6.328 22 C -0.145 4.145 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.227 0.773 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.267 0.733 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.565 -25.102 -2.651 25.290 hybrid contribution -0.253 0.334 -0.024 0.420 sum 1.313 -24.768 -2.675 24.946 Atomic orbital electron populations 1.69956 1.06082 1.26843 1.50505 1.25000 0.94902 0.99416 0.95036 0.86508 0.79843 0.82987 0.78186 1.20568 1.21200 1.19720 1.21055 0.93275 0.90374 1.51178 0.92225 1.19321 0.94262 0.91107 0.97778 1.21577 0.95616 0.80455 1.00603 1.45547 1.09830 1.05369 1.78512 1.16088 0.85688 0.80526 0.77890 1.90884 1.11760 1.86632 1.58381 1.45198 1.09312 1.04519 1.81531 1.20768 0.95786 0.81666 0.96133 1.21820 0.98654 0.93702 1.02171 1.21395 1.01751 0.96979 0.93678 1.21172 0.99351 0.89122 1.00308 1.23615 0.76299 0.86823 0.80750 1.90727 1.54129 1.62100 1.33419 1.84550 1.69407 1.42351 1.36462 1.21515 0.98182 0.93095 1.01745 1.21980 1.00790 0.96572 0.97484 0.92877 0.95995 0.95993 0.92823 0.92832 0.77426 0.77325 0.89317 0.91048 0.90392 0.90485 0.90464 0.87118 0.73250 0.90968 0.90232 0.91446 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 11 N -0.74 -12.86 5.56 -65.23 -0.36 -13.23 16 12 C 0.70 11.86 8.53 -86.92 -0.74 11.12 16 13 O -0.60 -12.56 16.01 5.29 0.08 -12.48 16 14 N -0.75 -8.87 5.08 -58.68 -0.30 -9.16 16 15 C 0.16 1.66 2.45 -67.93 -0.17 1.49 16 16 C -0.13 -0.90 5.39 -26.73 -0.14 -1.05 16 17 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 18 C -0.08 -0.56 2.63 -91.77 -0.24 -0.80 16 19 C 0.48 4.00 7.63 36.01 0.27 4.27 16 20 O -0.52 -5.86 16.74 -18.75 -0.31 -6.17 16 21 O -0.52 -3.19 13.32 -39.24 -0.52 -3.72 16 22 C -0.11 -0.83 5.14 -26.70 -0.14 -0.97 16 23 C -0.13 -1.21 5.50 -26.70 -0.15 -1.36 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.39 5.83 8.49 -40.82 -0.35 5.48 16 30 H 0.39 3.54 8.62 -40.82 -0.35 3.19 16 31 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.41 0.92 9.10 45.56 0.41 1.34 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -34.75 343.45 -8.23 -42.97 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.71 Total: 3.82 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.00 Total: 1.79 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.08 Total: -47.77 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.75 Total: -22.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.75 -8.23 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.083 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds