Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99768 * 2 1 4 4 H 1.48504 * 109.47385 * 270.00530 * 3 2 1 5 5 H 1.48506 * 109.47165 * 30.00149 * 3 2 1 6 6 H 1.48496 * 109.47362 * 150.00200 * 3 2 1 7 7 C 1.37875 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47504 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47323 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99663 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00473 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99587 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47382 * 155.00007 * 15 14 12 17 17 C 1.52997 * 109.47493 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46880 * 300.00006 * 17 16 15 19 19 C 1.50706 * 109.47215 * 179.97438 * 18 17 16 20 20 O 1.20825 * 119.99859 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00295 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47228 * 60.00058 * 18 17 16 23 23 C 1.52996 * 109.46947 * 274.99987 * 15 14 12 24 24 H 0.96994 * 120.00492 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47093 * 59.99782 * 9 7 2 26 26 H 1.09003 * 109.46981 * 300.00023 * 9 7 2 27 27 H 1.09000 * 109.47355 * 59.99659 * 10 9 7 28 28 H 1.09003 * 109.46789 * 299.99857 * 10 9 7 29 29 H 0.97000 * 120.00025 * 359.97438 * 11 10 9 30 30 H 0.97008 * 120.00392 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.47205 * 35.00343 * 15 14 12 32 32 H 1.09003 * 109.47318 * 59.99674 * 16 15 14 33 33 H 1.09008 * 109.46908 * 300.00117 * 16 15 14 34 34 H 1.08997 * 109.47186 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.47116 * 59.99536 * 17 16 15 36 36 H 1.09000 * 109.47459 * 300.00106 * 18 17 16 37 37 H 0.96700 * 117.00196 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47766 * 59.99578 * 22 18 17 39 39 H 1.09005 * 109.47327 * 180.02562 * 22 18 17 40 40 H 1.09000 * 109.47091 * 299.99317 * 23 15 14 41 41 H 1.08997 * 109.47192 * 60.00121 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0980 -0.0018 13 8 3.4027 -6.0980 -0.0023 14 7 1.5130 -7.2651 -0.0018 15 6 2.2456 -8.5339 -0.0019 16 6 1.3685 -9.6293 0.6076 17 6 2.1337 -10.9542 0.6081 18 6 2.4980 -11.3331 -0.8287 19 6 3.2523 -12.6378 -0.8283 20 8 3.4760 -13.2060 0.2143 21 8 3.6766 -13.1682 -1.9860 22 6 3.3752 -10.2378 -1.4383 23 6 2.6094 -8.9125 -1.4390 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 0.5429 -4.9308 -0.0011 30 1 0.5430 -7.2652 -0.0010 31 1 3.1563 -8.4277 0.5875 32 1 0.4577 -9.7356 0.0183 33 1 1.1093 -9.3595 1.6315 34 1 1.5086 -11.7346 1.0420 35 1 3.0443 -10.8476 1.1977 36 1 1.5875 -11.4396 -1.4184 37 1 4.1564 -14.0062 -1.9352 38 1 4.2857 -10.1311 -0.8487 39 1 3.6344 -10.5075 -2.4621 40 1 1.6986 -9.0188 -2.0283 41 1 3.2343 -8.1322 -1.8733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -180.857336 kcal Electronic energy + Delta-G solvation = -21947.344876 eV Core-core repulsion = 18438.690530 eV Total energy + Delta-G solvation = -3508.654345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64676 -40.99512 -39.02038 -37.11068 -36.55069 -35.20967 -34.74491 -31.88200 -31.76781 -30.33505 -26.75587 -25.11011 -23.75747 -23.00203 -22.24067 -21.67068 -20.89431 -19.30806 -18.94765 -18.39858 -17.78719 -17.38707 -16.86042 -16.50597 -16.48133 -15.81798 -15.40032 -15.22916 -14.89659 -14.81079 -14.50555 -14.29109 -13.97806 -13.50652 -13.22551 -13.19298 -12.92816 -12.62207 -12.55803 -12.50667 -12.34159 -12.20712 -12.12579 -11.65836 -11.52056 -11.49557 -11.44309 -11.29900 -11.09021 -10.59002 -10.24631 -9.66586 -8.22935 -6.32897 1.20246 1.42801 1.43240 1.54654 1.79752 2.16178 2.22362 2.42501 3.11857 3.40345 3.58671 3.65403 3.98639 4.00794 4.16899 4.35551 4.38818 4.48443 4.50903 4.53631 4.54924 4.71344 4.85005 4.89017 4.99099 5.09067 5.15616 5.18734 5.31777 5.33671 5.38584 5.54728 5.61764 5.62753 5.66387 5.81294 6.12579 6.19327 6.80381 7.00534 7.20601 7.36415 7.67047 8.88938 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054819 B = 0.002352 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.646928 B =11902.285921 C =12094.036894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.727 5.727 15 C 0.158 3.842 16 C -0.113 4.113 17 C -0.097 4.097 18 C -0.076 4.076 19 C 0.487 3.513 20 O -0.552 6.552 21 O -0.512 6.512 22 C -0.100 4.100 23 C -0.123 4.123 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.407 0.593 30 H 0.412 0.588 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.139 0.861 37 H 0.426 0.574 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -26.437 -3.586 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.389 5.389 12 C 0.396 3.604 13 O -0.523 6.523 14 N -0.383 5.383 15 C 0.053 3.947 16 C -0.151 4.151 17 C -0.136 4.136 18 C -0.095 4.095 19 C 0.331 3.669 20 O -0.443 6.443 21 O -0.325 6.325 22 C -0.138 4.138 23 C -0.162 4.162 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.242 0.758 30 H 0.248 0.752 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.287 0.713 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.663 -26.100 -3.325 26.319 hybrid contribution 0.025 0.540 0.147 0.560 sum 0.688 -25.560 -3.178 25.766 Atomic orbital electron populations 1.70053 1.07478 1.27971 1.51075 1.25864 0.95816 1.03052 0.94471 0.85451 0.78609 0.78500 0.78524 1.19737 1.20513 1.19158 1.21469 0.93582 0.91972 1.51424 0.92389 1.19120 0.94222 0.91613 0.96367 1.21035 0.94590 0.81287 0.99420 1.45218 1.10375 1.04435 1.78868 1.16217 0.85186 0.81376 0.77575 1.90858 1.13870 1.87321 1.60228 1.45029 1.10237 1.03395 1.79677 1.20939 0.95382 0.81650 0.96768 1.21743 0.98793 0.92011 1.02508 1.21354 1.01117 0.97192 0.93887 1.21188 1.00006 0.88042 1.00271 1.23786 0.75644 0.86879 0.80544 1.90722 1.55628 1.63251 1.34703 1.84513 1.69238 1.43443 1.35340 1.21422 0.97575 0.92620 1.02218 1.21892 1.01305 0.96317 0.96681 0.92553 0.97223 0.97298 0.94095 0.93970 0.75751 0.75151 0.92329 0.88243 0.90177 0.89616 0.92374 0.84357 0.71266 0.92529 0.89164 0.89207 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.61 9.11 25.60 0.23 -30.37 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.23 5.09 29.84 0.15 1.38 16 10 C 0.16 7.03 5.61 86.38 0.48 7.52 16 11 N -0.73 -25.42 5.56 -478.54 -2.66 -28.08 16 12 C 0.70 23.57 8.53 179.05 1.53 25.10 16 13 O -0.64 -27.55 16.01 -3.98 -0.06 -27.62 16 14 N -0.73 -16.23 5.08 -457.82 -2.33 -18.56 16 15 C 0.16 3.07 2.45 44.99 0.11 3.18 16 16 C -0.11 -1.34 5.39 30.59 0.16 -1.18 16 17 C -0.10 -1.26 4.49 30.59 0.14 -1.13 16 18 C -0.08 -0.89 2.63 -11.54 -0.03 -0.92 16 19 C 0.49 7.27 7.63 71.24 0.54 7.81 16 20 O -0.55 -12.10 16.74 21.97 0.37 -11.73 16 21 O -0.51 -5.25 13.32 -51.35 -0.68 -5.93 16 22 C -0.10 -1.43 5.14 30.61 0.16 -1.27 16 23 C -0.12 -2.16 5.50 30.61 0.17 -1.99 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.41 11.72 8.49 -92.71 -0.79 10.94 16 30 H 0.41 6.33 8.62 -92.70 -0.80 5.54 16 31 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.43 1.11 9.10 -74.06 -0.67 0.44 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.12 8.11 -2.38 -0.02 1.10 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.89 343.45 -0.15 -76.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -1.20 Total: 15.06 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.11 Total: 8.97 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.70 Total: -100.49 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.38 Total: -45.28 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.89 -0.15 -76.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.815 kcal (2) G-P(sol) polarization free energy of solvation -75.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds