Wall clock time and date at job start Tue Mar 31 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48507 * 109.46946 * 239.99618 * 3 2 1 5 5 H 1.48501 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47074 * 120.00204 * 3 2 1 7 7 C 1.37877 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47010 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47263 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00284 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99739 * 354.92366 * 12 11 10 14 14 N 1.34769 * 119.99996 * 174.92764 * 12 11 10 15 15 C 1.46919 * 120.63159 * 5.03308 * 14 12 11 16 16 C 1.53197 * 108.77449 * 233.58483 * 15 14 12 17 17 C 1.53040 * 109.31448 * 305.36384 * 16 15 14 18 18 C 1.53046 * 109.53632 * 61.36216 * 17 16 15 19 19 H 1.09001 * 109.49499 * 58.62124 * 18 17 16 20 20 C 1.52997 * 109.49457 * 178.68462 * 18 17 16 21 21 C 1.50704 * 109.47035 * 185.00457 * 20 18 17 22 22 O 1.20831 * 119.99795 * 359.97438 * 21 20 18 23 23 O 1.34227 * 120.00037 * 180.02562 * 21 20 18 24 24 C 1.46931 * 120.62819 * 184.75021 * 14 12 11 25 25 H 0.96999 * 119.99744 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46841 * 300.00147 * 9 7 2 27 27 H 1.08998 * 109.46800 * 60.00133 * 9 7 2 28 28 H 1.09003 * 109.47602 * 300.00209 * 10 9 7 29 29 H 1.09007 * 109.47411 * 60.00169 * 10 9 7 30 30 H 0.97000 * 119.99655 * 0.02562 * 11 10 9 31 31 H 1.08994 * 109.58851 * 353.37015 * 15 14 12 32 32 H 1.09001 * 109.59149 * 113.79841 * 15 14 12 33 33 H 1.09000 * 109.49594 * 65.31479 * 16 15 14 34 34 H 1.09004 * 109.49860 * 185.38177 * 16 15 14 35 35 H 1.08997 * 109.46113 * 181.38310 * 17 16 15 36 36 H 1.09004 * 109.45795 * 301.36002 * 17 16 15 37 37 H 1.09002 * 109.47660 * 304.99861 * 20 18 17 38 38 H 1.08998 * 109.47409 * 65.00126 * 20 18 17 39 39 H 0.96706 * 116.99890 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.58554 * 246.20171 * 24 14 12 41 41 H 1.08997 * 109.58960 * 6.62993 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9309 0.0045 12 6 2.1866 -6.0981 0.0062 13 8 3.3989 -6.1002 -0.0869 14 7 1.5167 -7.2628 0.1110 15 6 0.0476 -7.2838 0.1134 16 6 -0.4325 -8.0440 1.3538 17 6 0.2159 -9.4299 1.3805 18 6 1.7369 -9.2819 1.4634 19 1 1.9994 -8.7194 2.3594 20 6 2.3823 -10.6677 1.5231 21 6 3.8682 -10.5215 1.7282 22 8 4.3604 -9.4216 1.8170 23 8 4.6449 -11.6131 1.8113 24 6 2.2416 -8.5362 0.2187 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5563 0.8920 27 1 0.6241 -2.5575 -0.8880 28 1 2.8720 -3.6052 -0.8873 29 1 2.8719 -3.6036 0.8927 30 1 0.5427 -4.9308 0.0044 31 1 -0.3324 -6.2626 0.1410 32 1 -0.3122 -7.7856 -0.7847 33 1 -0.1496 -7.4926 2.2505 34 1 -1.5168 -8.1497 1.3186 35 1 -0.1431 -9.9821 2.2490 36 1 -0.0470 -9.9714 0.4718 37 1 1.9551 -11.2322 2.3520 38 1 2.1948 -11.1965 0.5886 39 1 5.5921 -11.4690 1.9427 40 1 2.0571 -9.1381 -0.6711 41 1 3.3097 -8.3417 0.3157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:44 Heat of formation + Delta-G solvation = -135.128856 kcal Electronic energy + Delta-G solvation = -22626.027391 eV Core-core repulsion = 19119.355982 eV Total energy + Delta-G solvation = -3506.671410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76476 -39.88539 -37.70638 -36.31123 -34.80601 -33.92493 -32.67382 -31.93559 -29.60320 -28.10528 -25.64417 -24.21246 -23.36857 -21.65504 -21.00163 -20.34982 -19.35585 -18.22878 -17.79603 -16.77969 -16.51473 -16.29182 -15.58345 -15.25932 -14.90102 -14.50659 -14.33488 -14.06096 -13.74682 -13.60249 -13.24738 -12.91293 -12.81957 -12.54059 -12.27920 -12.14437 -11.69160 -11.35316 -11.22124 -11.12796 -11.02522 -10.96742 -10.87866 -10.60458 -10.37393 -10.25674 -9.78298 -9.47422 -9.22417 -8.63537 -8.41262 -8.10398 -6.05577 -4.07872 1.99953 2.76724 2.97632 3.34416 3.37625 3.41780 3.64955 4.23696 4.38691 4.47297 4.51521 4.59433 4.78314 4.84765 5.02734 5.16716 5.22304 5.26603 5.31438 5.37936 5.46847 5.62127 5.70447 5.75900 5.88601 6.00960 6.14423 6.31047 6.38876 6.46995 6.69381 6.83965 7.09262 7.27040 7.60753 7.67560 7.68188 7.93953 8.30416 8.46533 8.97084 9.08934 9.56554 11.06158 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027885 B = 0.003145 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.874002 B = 8899.737454 C = 9639.086668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.139 3.861 11 N -0.740 5.740 12 C 0.702 3.298 13 O -0.591 6.591 14 N -0.634 5.634 15 C 0.109 3.891 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.096 4.096 19 H 0.087 0.913 20 C -0.105 4.105 21 C 0.468 3.532 22 O -0.496 6.496 23 O -0.523 6.523 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -25.433 3.085 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.016 3.984 11 N -0.396 5.396 12 C 0.403 3.597 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.015 4.015 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.116 4.116 19 H 0.105 0.895 20 C -0.143 4.143 21 C 0.310 3.690 22 O -0.383 6.383 23 O -0.336 6.336 24 C 0.005 3.995 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.120 -24.993 2.986 25.196 hybrid contribution 0.474 0.990 0.127 1.105 sum -0.646 -24.003 3.113 24.212 Atomic orbital electron populations 1.69950 1.06079 1.26909 1.50518 1.24992 0.94896 0.99370 0.95035 0.86567 0.79506 0.82634 0.78797 1.20111 1.21277 1.20108 1.21031 0.93264 0.90387 1.51201 0.92262 1.19311 0.94244 0.91091 0.97701 1.21587 0.95651 0.80507 1.00623 1.45698 1.09806 1.05314 1.78773 1.15972 0.85344 0.80405 0.77960 1.90893 1.12022 1.86086 1.57896 1.47208 1.05687 1.05536 1.78785 1.21623 0.80522 1.01335 0.97980 1.21914 1.00363 0.96072 0.98977 1.21543 0.93581 0.97389 1.02373 1.21542 0.95247 0.93706 1.01059 0.89496 1.21395 0.87205 1.00034 1.05715 1.23590 0.90843 0.81869 0.72715 1.90836 1.75618 1.27244 1.44577 1.84512 1.25354 1.38840 1.84856 1.21688 0.99425 0.83191 0.95201 0.92846 0.96053 0.96019 0.92766 0.92914 0.77301 0.90016 0.91519 0.91129 0.90439 0.91413 0.91418 0.87336 0.87441 0.73095 0.92545 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.36 5.09 -27.88 -0.14 0.22 16 10 C 0.14 3.17 5.62 -4.04 -0.02 3.14 16 11 N -0.74 -14.22 5.47 -65.22 -0.36 -14.58 16 12 C 0.70 13.66 8.30 -86.93 -0.72 12.94 16 13 O -0.59 -13.99 15.78 5.28 0.08 -13.91 16 14 N -0.63 -9.24 2.97 -178.24 -0.53 -9.77 16 15 C 0.11 1.16 6.43 -3.71 -0.02 1.14 16 16 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 17 C -0.11 -0.78 5.16 -26.69 -0.14 -0.91 16 18 C -0.10 -0.90 1.99 -90.27 -0.18 -1.08 16 19 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 20 C -0.11 -0.71 5.29 -27.88 -0.15 -0.86 16 21 C 0.47 4.48 8.08 36.01 0.29 4.77 16 22 O -0.50 -7.07 14.76 -18.75 -0.28 -7.35 16 23 O -0.52 -3.73 13.42 -39.25 -0.53 -4.26 16 24 C 0.13 1.64 5.39 -3.48 -0.02 1.63 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.39 6.51 5.93 -40.82 -0.24 6.27 16 31 H 0.08 0.89 5.57 -51.93 -0.29 0.60 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 1.53 9.10 45.56 0.41 1.94 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 1.80 5.02 -51.93 -0.26 1.54 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -36.59 335.88 -7.91 -44.50 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.40 Total: 3.15 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.68 Total: 6.16 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.15 Total: -50.10 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.72 Total: -25.51 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.59 -7.91 -44.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.629 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds