Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48507 * 109.46946 * 239.99618 * 3 2 1 5 5 H 1.48501 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47074 * 120.00204 * 3 2 1 7 7 C 1.37877 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47010 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47263 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00284 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99739 * 354.92366 * 12 11 10 14 14 N 1.34769 * 119.99996 * 174.92764 * 12 11 10 15 15 C 1.46919 * 120.63159 * 5.03308 * 14 12 11 16 16 C 1.53197 * 108.77449 * 233.58483 * 15 14 12 17 17 C 1.53040 * 109.31448 * 305.36384 * 16 15 14 18 18 C 1.53046 * 109.53632 * 61.36216 * 17 16 15 19 19 H 1.09001 * 109.49499 * 58.62124 * 18 17 16 20 20 C 1.52997 * 109.49457 * 178.68462 * 18 17 16 21 21 C 1.50704 * 109.47035 * 185.00457 * 20 18 17 22 22 O 1.20831 * 119.99795 * 359.97438 * 21 20 18 23 23 O 1.34227 * 120.00037 * 180.02562 * 21 20 18 24 24 C 1.46931 * 120.62819 * 184.75021 * 14 12 11 25 25 H 0.96999 * 119.99744 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46841 * 300.00147 * 9 7 2 27 27 H 1.08998 * 109.46800 * 60.00133 * 9 7 2 28 28 H 1.09003 * 109.47602 * 300.00209 * 10 9 7 29 29 H 1.09007 * 109.47411 * 60.00169 * 10 9 7 30 30 H 0.97000 * 119.99655 * 0.02562 * 11 10 9 31 31 H 1.08994 * 109.58851 * 353.37015 * 15 14 12 32 32 H 1.09001 * 109.59149 * 113.79841 * 15 14 12 33 33 H 1.09000 * 109.49594 * 65.31479 * 16 15 14 34 34 H 1.09004 * 109.49860 * 185.38177 * 16 15 14 35 35 H 1.08997 * 109.46113 * 181.38310 * 17 16 15 36 36 H 1.09004 * 109.45795 * 301.36002 * 17 16 15 37 37 H 1.09002 * 109.47660 * 304.99861 * 20 18 17 38 38 H 1.08998 * 109.47409 * 65.00126 * 20 18 17 39 39 H 0.96706 * 116.99890 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.58554 * 246.20171 * 24 14 12 41 41 H 1.08997 * 109.58960 * 6.62993 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9309 0.0045 12 6 2.1866 -6.0981 0.0062 13 8 3.3989 -6.1002 -0.0869 14 7 1.5167 -7.2628 0.1110 15 6 0.0476 -7.2838 0.1134 16 6 -0.4325 -8.0440 1.3538 17 6 0.2159 -9.4299 1.3805 18 6 1.7369 -9.2819 1.4634 19 1 1.9994 -8.7194 2.3594 20 6 2.3823 -10.6677 1.5231 21 6 3.8682 -10.5215 1.7282 22 8 4.3604 -9.4216 1.8170 23 8 4.6449 -11.6131 1.8113 24 6 2.2416 -8.5362 0.2187 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5563 0.8920 27 1 0.6241 -2.5575 -0.8880 28 1 2.8720 -3.6052 -0.8873 29 1 2.8719 -3.6036 0.8927 30 1 0.5427 -4.9308 0.0044 31 1 -0.3324 -6.2626 0.1410 32 1 -0.3122 -7.7856 -0.7847 33 1 -0.1496 -7.4926 2.2505 34 1 -1.5168 -8.1497 1.3186 35 1 -0.1431 -9.9821 2.2490 36 1 -0.0470 -9.9714 0.4718 37 1 1.9551 -11.2322 2.3520 38 1 2.1948 -11.1965 0.5886 39 1 5.5921 -11.4690 1.9427 40 1 2.0571 -9.1381 -0.6711 41 1 3.3097 -8.3417 0.3157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -162.145225 kcal Electronic energy + Delta-G solvation = -22627.198909 eV Core-core repulsion = 19119.355982 eV Total energy + Delta-G solvation = -3507.842927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69799 -41.03383 -38.78626 -37.06458 -36.63618 -35.15600 -34.49878 -32.78584 -31.47189 -28.96296 -27.13033 -25.77503 -24.20951 -22.99677 -22.40832 -21.30452 -20.54659 -19.10730 -18.93587 -18.50813 -17.48164 -17.41726 -16.84481 -16.63647 -16.51846 -15.69957 -15.41406 -15.32889 -15.25036 -14.60653 -14.31196 -14.26559 -14.00261 -13.65313 -13.44233 -13.23932 -12.93463 -12.86629 -12.54279 -12.43454 -12.25650 -12.10499 -11.87786 -11.83133 -11.68887 -11.63966 -11.45750 -11.19266 -11.10810 -10.61013 -10.17904 -9.44365 -8.24893 -6.35471 1.29042 1.40799 1.43783 1.51465 1.67086 2.12765 2.21439 2.40325 3.01011 3.09499 3.67996 3.78667 3.89996 4.09108 4.11014 4.34433 4.40000 4.46986 4.49014 4.58900 4.65687 4.70907 4.81297 4.82415 4.90985 4.98182 5.07669 5.16251 5.26030 5.30835 5.48312 5.49487 5.56339 5.61786 5.72412 5.77316 5.95194 6.15893 6.76525 6.99262 7.04847 7.33568 7.56140 8.86989 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027885 B = 0.003145 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.874002 B = 8899.737454 C = 9639.086668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.694 3.306 13 O -0.641 6.641 14 N -0.626 5.626 15 C 0.099 3.901 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.089 4.089 19 H 0.053 0.947 20 C -0.099 4.099 21 C 0.469 3.531 22 O -0.555 6.555 23 O -0.515 6.515 24 C 0.121 3.879 25 H 0.267 0.733 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.404 0.596 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.423 0.577 40 H 0.083 0.917 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -27.425 3.059 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.035 3.965 11 N -0.392 5.392 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.363 5.363 15 C -0.022 4.022 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.108 4.108 19 H 0.072 0.928 20 C -0.136 4.136 21 C 0.313 3.687 22 O -0.446 6.446 23 O -0.329 6.329 24 C -0.002 4.002 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.243 0.757 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.284 0.716 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.729 -27.068 2.968 27.366 hybrid contribution 0.955 1.507 0.133 1.789 sum -1.774 -25.561 3.101 25.809 Atomic orbital electron populations 1.70049 1.07482 1.28130 1.50800 1.25866 0.95844 1.03039 0.94273 0.85486 0.78325 0.78056 0.79105 1.19379 1.20283 1.19418 1.21425 0.93552 0.91944 1.51898 0.92486 1.19094 0.94084 0.91469 0.96324 1.21078 0.94755 0.81379 0.99266 1.45393 1.10301 1.04396 1.79078 1.16191 0.84877 0.81533 0.77835 1.90852 1.14371 1.86993 1.60137 1.47312 1.07550 1.04447 1.76958 1.21992 0.77679 1.01908 1.00669 1.21930 1.02164 0.96439 0.96514 1.21561 0.90884 0.96798 1.04863 1.21440 0.97491 0.94380 0.97520 0.92800 1.21510 0.84774 0.98752 1.08569 1.24262 0.92206 0.81222 0.71004 1.90841 1.76842 1.29453 1.47451 1.84486 1.26522 1.37723 1.84135 1.21884 0.97196 0.82806 0.98291 0.92436 0.97307 0.97207 0.94078 0.94355 0.75726 0.90808 0.88751 0.93246 0.87515 0.88828 0.88860 0.83990 0.84399 0.71565 0.89869 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.47 5.09 29.85 0.15 1.63 16 10 C 0.16 7.60 5.62 86.38 0.49 8.08 16 11 N -0.73 -29.25 5.47 -478.52 -2.62 -31.87 16 12 C 0.69 28.11 8.30 179.06 1.49 29.59 16 13 O -0.64 -32.18 15.78 -4.00 -0.06 -32.24 16 14 N -0.63 -18.21 2.97 -836.08 -2.48 -20.69 16 15 C 0.10 1.93 6.43 86.37 0.56 2.49 16 16 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 17 C -0.10 -1.02 5.16 30.62 0.16 -0.86 16 18 C -0.09 -1.50 1.99 -10.57 -0.02 -1.52 16 19 H 0.05 1.28 7.95 -2.39 -0.02 1.26 16 20 C -0.10 -1.03 5.29 29.85 0.16 -0.87 16 21 C 0.47 8.61 8.08 71.24 0.58 9.19 16 22 O -0.56 -16.68 14.76 21.95 0.32 -16.36 16 23 O -0.52 -6.60 13.42 -51.39 -0.69 -7.29 16 24 C 0.12 3.05 5.39 86.51 0.47 3.51 16 25 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.40 13.76 5.93 -92.71 -0.55 13.21 16 31 H 0.07 1.54 5.57 -2.39 -0.01 1.53 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.42 2.87 9.10 -74.05 -0.67 2.19 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.31 5.02 -2.39 -0.01 2.29 16 Total: -1.00 -83.80 335.88 1.51 -82.29 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.17 Total: 15.38 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 4.90 Total: 18.86 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.81 Total: -107.31 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.43 Total: -55.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -83.80 1.51 -82.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.851 kcal (2) G-P(sol) polarization free energy of solvation -83.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds