Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47155 * 299.99357 * 3 2 1 6 6 H 1.48499 * 109.47362 * 59.99510 * 3 2 1 7 7 C 1.37878 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00175 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46828 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47094 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00057 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99804 * 5.06640 * 12 11 10 14 14 N 1.34771 * 120.00367 * 185.07478 * 12 11 10 15 15 C 1.46930 * 120.62738 * 354.95837 * 14 12 11 16 16 C 1.53190 * 108.77608 * 126.43758 * 15 14 12 17 17 C 1.53045 * 109.31358 * 54.63464 * 16 15 14 18 18 C 1.53043 * 109.53582 * 298.63745 * 17 16 15 19 19 H 1.08996 * 109.49883 * 301.37829 * 18 17 16 20 20 C 1.53000 * 109.49332 * 181.31599 * 18 17 16 21 21 C 1.50707 * 109.46772 * 175.06335 * 20 18 17 22 22 O 1.20824 * 119.99927 * 0.02562 * 21 20 18 23 23 O 1.34231 * 119.99988 * 179.97438 * 21 20 18 24 24 C 1.46931 * 120.60678 * 174.98659 * 14 12 11 25 25 H 0.97005 * 119.99796 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47302 * 59.99781 * 9 7 2 27 27 H 1.09003 * 109.47235 * 299.99307 * 9 7 2 28 28 H 1.09003 * 109.47186 * 59.99920 * 10 9 7 29 29 H 1.09003 * 109.46818 * 299.99772 * 10 9 7 30 30 H 0.96993 * 120.00200 * 359.97438 * 11 10 9 31 31 H 1.08996 * 109.58609 * 6.64991 * 15 14 12 32 32 H 1.09007 * 109.58607 * 246.22294 * 15 14 12 33 33 H 1.08998 * 109.49604 * 294.68605 * 16 15 14 34 34 H 1.08991 * 109.52616 * 174.60301 * 16 15 14 35 35 H 1.08998 * 109.46142 * 178.61571 * 17 16 15 36 36 H 1.09004 * 109.45832 * 58.65104 * 17 16 15 37 37 H 1.09000 * 109.47424 * 55.06981 * 20 18 17 38 38 H 1.09001 * 109.47090 * 295.06032 * 20 18 17 39 39 H 0.96693 * 116.99860 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.56090 * 113.76162 * 24 14 12 41 41 H 1.08997 * 109.61463 * 353.33057 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0980 0.0003 13 8 3.3988 -6.1001 0.0942 14 7 1.5167 -7.2629 -0.1035 15 6 0.0476 -7.2839 -0.1069 16 6 -0.4317 -8.0461 -1.3463 17 6 0.2167 -9.4321 -1.3703 18 6 1.7378 -9.2842 -1.4525 19 1 2.0008 -8.7232 -2.3492 20 6 2.3832 -10.6702 -1.5095 21 6 3.8694 -10.5242 -1.7122 22 8 4.3618 -9.4244 -1.8014 23 8 4.6463 -11.6159 -1.7927 24 6 2.2423 -8.5357 -0.2147 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8718 -3.6043 -0.8895 30 1 0.5427 -4.9308 0.0000 31 1 -0.3324 -6.2627 -0.1363 32 1 -0.3128 -7.7843 0.7919 33 1 -0.1483 -7.4962 -2.2437 34 1 -1.5159 -8.1523 -1.3119 35 1 -0.1417 -9.9858 -2.2381 36 1 -0.0470 -9.9722 -0.4609 37 1 1.9574 -11.2355 -2.3384 38 1 2.1942 -11.1978 -0.5746 39 1 5.5936 -11.4720 -1.9226 40 1 2.0613 -9.1380 0.6756 41 1 3.3099 -8.3406 -0.3156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -135.138849 kcal Electronic energy + Delta-G solvation = -22627.552039 eV Core-core repulsion = 19120.880196 eV Total energy + Delta-G solvation = -3506.671843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77458 -39.88729 -37.71656 -36.31398 -34.80706 -33.93033 -32.67584 -31.94083 -29.60484 -28.11294 -25.64845 -24.22012 -23.36705 -21.65771 -21.00528 -20.35151 -19.35433 -18.23102 -17.79724 -16.78431 -16.51742 -16.29509 -15.58409 -15.25911 -14.90682 -14.50103 -14.33416 -14.06546 -13.75347 -13.60265 -13.24602 -12.91345 -12.82121 -12.54222 -12.29339 -12.15117 -11.69368 -11.35017 -11.21635 -11.13174 -11.02641 -10.99473 -10.87592 -10.57437 -10.36800 -10.27287 -9.77651 -9.47893 -9.19770 -8.63697 -8.42200 -8.10486 -6.06040 -4.08105 1.99774 2.76545 2.97452 3.31085 3.38519 3.44554 3.64978 4.23556 4.38512 4.47405 4.51668 4.59193 4.78213 4.84638 5.02794 5.16862 5.22172 5.26940 5.31213 5.37791 5.46741 5.62131 5.70386 5.75789 5.88529 6.01275 6.14404 6.30983 6.38965 6.46965 6.69406 6.83931 7.09248 7.27021 7.60968 7.67428 7.67984 7.93811 8.30271 8.46493 8.97361 9.08912 9.56466 11.05763 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.003145 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.236261 B = 8899.983097 C = 9639.990928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.740 5.740 12 C 0.702 3.298 13 O -0.591 6.591 14 N -0.634 5.634 15 C 0.109 3.891 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.096 4.096 19 H 0.086 0.914 20 C -0.105 4.105 21 C 0.468 3.532 22 O -0.496 6.496 23 O -0.523 6.523 24 C 0.128 3.872 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -25.463 -3.070 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.396 5.396 12 C 0.403 3.597 13 O -0.469 6.469 14 N -0.372 5.372 15 C -0.015 4.015 16 C -0.173 4.173 17 C -0.149 4.149 18 C -0.116 4.116 19 H 0.105 0.895 20 C -0.143 4.143 21 C 0.310 3.690 22 O -0.383 6.383 23 O -0.336 6.336 24 C 0.005 3.995 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.227 0.773 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.074 0.926 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.080 -25.028 -2.969 25.226 hybrid contribution 0.445 0.998 -0.129 1.101 sum -0.635 -24.029 -3.098 24.237 Atomic orbital electron populations 1.69970 1.06080 1.26681 1.50704 1.24996 0.94897 0.99397 0.95067 0.86457 0.80222 0.83339 0.77558 1.19556 1.20970 1.20969 1.21106 0.93335 0.90353 1.50911 0.92155 1.19325 0.94258 0.91130 0.97711 1.21586 0.95647 0.80504 1.00628 1.45695 1.09805 1.05313 1.78776 1.15973 0.85344 0.80402 0.77964 1.90894 1.12026 1.86089 1.57879 1.47207 1.05679 1.05540 1.78778 1.21624 0.80521 1.01326 0.97985 1.21912 1.00376 0.96063 0.98983 1.21542 0.93568 0.97392 1.02382 1.21464 0.95272 0.93712 1.01130 0.89519 1.21395 0.87192 1.00011 1.05733 1.23590 0.90852 0.81866 0.72705 1.90834 1.75628 1.27254 1.44557 1.84510 1.25328 1.38835 1.84884 1.21604 0.99437 0.83224 0.95264 0.92965 0.96041 0.96014 0.92764 0.92910 0.77303 0.90015 0.91513 0.91131 0.90433 0.91407 0.91414 0.87323 0.87435 0.73095 0.92596 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.16 5.62 -4.04 -0.02 3.14 16 11 N -0.74 -14.21 5.47 -65.22 -0.36 -14.57 16 12 C 0.70 13.66 8.29 -86.92 -0.72 12.94 16 13 O -0.59 -13.99 15.78 5.28 0.08 -13.91 16 14 N -0.63 -9.24 2.97 -178.49 -0.53 -9.77 16 15 C 0.11 1.16 6.43 -3.71 -0.02 1.14 16 16 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 17 C -0.11 -0.78 5.17 -26.69 -0.14 -0.91 16 18 C -0.10 -0.90 1.98 -90.50 -0.18 -1.08 16 19 H 0.09 1.02 7.96 -51.93 -0.41 0.60 16 20 C -0.11 -0.71 5.29 -27.88 -0.15 -0.85 16 21 C 0.47 4.47 8.08 36.01 0.29 4.76 16 22 O -0.50 -7.06 14.74 -18.75 -0.28 -7.34 16 23 O -0.52 -3.73 13.42 -39.26 -0.53 -4.25 16 24 C 0.13 1.64 5.37 -3.71 -0.02 1.62 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.39 6.51 5.93 -40.82 -0.24 6.27 16 31 H 0.08 0.89 5.57 -51.93 -0.29 0.60 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 1.52 9.10 45.56 0.41 1.94 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.80 5.00 -51.93 -0.26 1.55 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -36.62 335.81 -7.91 -44.53 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.40 Total: 3.08 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.68 Total: 6.18 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.15 Total: -50.07 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.72 Total: -25.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.62 -7.91 -44.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.609 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds