Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48497 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47155 * 299.99357 * 3 2 1 6 6 H 1.48499 * 109.47362 * 59.99510 * 3 2 1 7 7 C 1.37878 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00175 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46828 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47094 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00057 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99804 * 5.06640 * 12 11 10 14 14 N 1.34771 * 120.00367 * 185.07478 * 12 11 10 15 15 C 1.46930 * 120.62738 * 354.95837 * 14 12 11 16 16 C 1.53190 * 108.77608 * 126.43758 * 15 14 12 17 17 C 1.53045 * 109.31358 * 54.63464 * 16 15 14 18 18 C 1.53043 * 109.53582 * 298.63745 * 17 16 15 19 19 H 1.08996 * 109.49883 * 301.37829 * 18 17 16 20 20 C 1.53000 * 109.49332 * 181.31599 * 18 17 16 21 21 C 1.50707 * 109.46772 * 175.06335 * 20 18 17 22 22 O 1.20824 * 119.99927 * 0.02562 * 21 20 18 23 23 O 1.34231 * 119.99988 * 179.97438 * 21 20 18 24 24 C 1.46931 * 120.60678 * 174.98659 * 14 12 11 25 25 H 0.97005 * 119.99796 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47302 * 59.99781 * 9 7 2 27 27 H 1.09003 * 109.47235 * 299.99307 * 9 7 2 28 28 H 1.09003 * 109.47186 * 59.99920 * 10 9 7 29 29 H 1.09003 * 109.46818 * 299.99772 * 10 9 7 30 30 H 0.96993 * 120.00200 * 359.97438 * 11 10 9 31 31 H 1.08996 * 109.58609 * 6.64991 * 15 14 12 32 32 H 1.09007 * 109.58607 * 246.22294 * 15 14 12 33 33 H 1.08998 * 109.49604 * 294.68605 * 16 15 14 34 34 H 1.08991 * 109.52616 * 174.60301 * 16 15 14 35 35 H 1.08998 * 109.46142 * 178.61571 * 17 16 15 36 36 H 1.09004 * 109.45832 * 58.65104 * 17 16 15 37 37 H 1.09000 * 109.47424 * 55.06981 * 20 18 17 38 38 H 1.09001 * 109.47090 * 295.06032 * 20 18 17 39 39 H 0.96693 * 116.99860 * 180.02562 * 23 21 20 40 40 H 1.09004 * 109.56090 * 113.76162 * 24 14 12 41 41 H 1.08997 * 109.61463 * 353.33057 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0980 0.0003 13 8 3.3988 -6.1001 0.0942 14 7 1.5167 -7.2629 -0.1035 15 6 0.0476 -7.2839 -0.1069 16 6 -0.4317 -8.0461 -1.3463 17 6 0.2167 -9.4321 -1.3703 18 6 1.7378 -9.2842 -1.4525 19 1 2.0008 -8.7232 -2.3492 20 6 2.3832 -10.6702 -1.5095 21 6 3.8694 -10.5242 -1.7122 22 8 4.3618 -9.4244 -1.8014 23 8 4.6463 -11.6159 -1.7927 24 6 2.2423 -8.5357 -0.2147 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8905 29 1 2.8718 -3.6043 -0.8895 30 1 0.5427 -4.9308 0.0000 31 1 -0.3324 -6.2627 -0.1363 32 1 -0.3128 -7.7843 0.7919 33 1 -0.1483 -7.4962 -2.2437 34 1 -1.5159 -8.1523 -1.3119 35 1 -0.1417 -9.9858 -2.2381 36 1 -0.0470 -9.9722 -0.4609 37 1 1.9574 -11.2355 -2.3384 38 1 2.1942 -11.1978 -0.5746 39 1 5.5936 -11.4720 -1.9226 40 1 2.0613 -9.1380 0.6756 41 1 3.3099 -8.3406 -0.3156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = -162.184027 kcal Electronic energy + Delta-G solvation = -22628.724806 eV Core-core repulsion = 19120.880196 eV Total energy + Delta-G solvation = -3507.844610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70646 -41.03487 -38.79707 -37.06644 -36.63690 -35.16069 -34.50150 -32.79175 -31.47212 -28.97077 -27.13205 -25.78278 -24.20799 -22.99980 -22.41014 -21.30971 -20.54286 -19.10831 -18.93718 -18.51407 -17.48654 -17.41973 -16.84330 -16.63708 -16.51233 -15.70305 -15.42072 -15.32696 -15.25169 -14.61174 -14.31384 -14.27877 -14.00063 -13.65462 -13.44418 -13.22780 -12.95855 -12.87255 -12.52813 -12.43446 -12.27320 -12.10234 -11.88056 -11.83205 -11.68806 -11.64338 -11.42982 -11.18680 -11.10445 -10.61961 -10.17963 -9.44509 -8.25271 -6.35573 1.28954 1.40405 1.40881 1.54401 1.67007 2.12781 2.21347 2.40194 3.00935 3.09240 3.67722 3.79475 3.89670 4.09084 4.10967 4.34704 4.39975 4.46991 4.48957 4.58946 4.65568 4.70894 4.81172 4.82433 4.91162 4.98281 5.07661 5.16181 5.26143 5.30990 5.48359 5.49607 5.56287 5.61733 5.72482 5.77412 5.95188 6.15856 6.76812 6.99248 7.04809 7.33582 7.56114 8.86998 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.003145 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.236261 B = 8899.983097 C = 9639.990928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.027 3.973 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.694 3.306 13 O -0.641 6.641 14 N -0.626 5.626 15 C 0.100 3.900 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.089 4.089 19 H 0.053 0.947 20 C -0.098 4.098 21 C 0.469 3.531 22 O -0.555 6.555 23 O -0.515 6.515 24 C 0.121 3.879 25 H 0.267 0.733 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.404 0.596 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.423 0.577 40 H 0.082 0.918 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -27.443 -3.045 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.035 3.965 11 N -0.392 5.392 12 C 0.396 3.604 13 O -0.523 6.523 14 N -0.363 5.363 15 C -0.022 4.022 16 C -0.171 4.171 17 C -0.141 4.141 18 C -0.109 4.109 19 H 0.072 0.928 20 C -0.136 4.136 21 C 0.313 3.687 22 O -0.446 6.446 23 O -0.329 6.329 24 C -0.002 4.002 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.243 0.757 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.284 0.716 40 H 0.101 0.899 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.729 -27.089 -2.953 27.386 hybrid contribution 0.938 1.514 -0.133 1.786 sum -1.791 -25.575 -3.086 25.823 Atomic orbital electron populations 1.70061 1.07469 1.27987 1.50951 1.25865 0.95847 1.03046 0.94314 0.85375 0.78859 0.78661 0.78018 1.19192 1.20041 1.20010 1.21473 0.93529 0.91920 1.51649 0.92530 1.19106 0.94092 0.91487 0.96345 1.21077 0.94755 0.81382 0.99265 1.45389 1.10300 1.04393 1.79078 1.16192 0.84875 0.81531 0.77838 1.90853 1.14378 1.86997 1.60121 1.47311 1.07543 1.04448 1.76954 1.21993 0.77676 1.01903 1.00673 1.21928 1.02178 0.96428 0.96522 1.21561 0.90871 0.96800 1.04871 1.21365 0.97517 0.94387 0.97594 0.92814 1.21509 0.84759 0.98725 1.08588 1.24262 0.92216 0.81219 0.70996 1.90838 1.76851 1.29461 1.47429 1.84485 1.26496 1.37719 1.84164 1.21796 0.97216 0.82842 0.98335 0.92454 0.97279 0.97189 0.94087 0.94355 0.75725 0.90802 0.88752 0.93241 0.87509 0.88817 0.88864 0.83975 0.84397 0.71567 0.89944 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.52 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.44 5.09 29.85 0.15 1.59 16 10 C 0.16 7.59 5.62 86.38 0.49 8.08 16 11 N -0.73 -29.24 5.47 -478.52 -2.62 -31.86 16 12 C 0.69 28.11 8.29 179.06 1.49 29.59 16 13 O -0.64 -32.18 15.78 -4.01 -0.06 -32.24 16 14 N -0.63 -18.21 2.97 -836.88 -2.49 -20.70 16 15 C 0.10 1.93 6.43 86.36 0.56 2.49 16 16 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 17 C -0.10 -1.02 5.17 30.62 0.16 -0.86 16 18 C -0.09 -1.51 1.98 -10.71 -0.02 -1.53 16 19 H 0.05 1.27 7.96 -2.39 -0.02 1.25 16 20 C -0.10 -1.02 5.29 29.85 0.16 -0.86 16 21 C 0.47 8.60 8.08 71.24 0.58 9.18 16 22 O -0.56 -16.67 14.74 21.97 0.32 -16.34 16 23 O -0.52 -6.59 13.42 -51.43 -0.69 -7.28 16 24 C 0.12 3.05 5.37 86.36 0.46 3.51 16 25 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.40 13.75 5.93 -92.71 -0.55 13.20 16 31 H 0.07 1.54 5.57 -2.39 -0.01 1.53 16 32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.42 2.86 9.10 -74.06 -0.67 2.19 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.32 5.00 -2.39 -0.01 2.31 16 Total: -1.00 -83.83 335.81 1.50 -82.33 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.17 Total: 15.12 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 4.89 Total: 18.94 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.82 Total: -107.22 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.43 Total: -55.87 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -83.83 1.50 -82.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.851 kcal (2) G-P(sol) polarization free energy of solvation -83.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds