Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47096 * 240.00158 * 2 1 3 5 5 C 1.50704 * 109.47153 * 59.99740 * 4 2 1 6 6 H 1.07997 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99793 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46885 * 90.00107 * 9 7 5 11 11 H 1.48502 * 109.47132 * 209.99967 * 9 7 5 12 12 H 1.48495 * 109.47046 * 330.00178 * 9 7 5 13 13 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 14 14 N 1.46904 * 109.46950 * 300.00123 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 13 17 17 C 1.38536 * 120.78197 * 259.71951 * 16 15 14 18 18 C 1.38508 * 119.16325 * 179.78173 * 17 16 15 19 19 F 1.35104 * 119.62305 * 180.27295 * 18 17 16 20 20 N 1.32038 * 120.75610 * 0.50046 * 18 17 16 21 21 C 1.31905 * 121.71428 * 359.75183 * 20 18 17 22 22 C 1.38371 * 120.76026 * 359.97438 * 21 20 18 23 23 F 1.35098 * 120.41208 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 25 25 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 26 26 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 29 29 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 30 30 H 1.08995 * 109.47051 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46901 * 300.00144 * 4 2 1 32 32 H 0.97005 * 119.99618 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47319 * 180.02562 * 13 2 1 34 34 H 1.09003 * 109.47435 * 59.99376 * 13 2 1 35 35 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 37 37 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 38 38 H 1.08000 * 120.42065 * 0.02562 * 17 16 15 39 39 H 1.08002 * 119.62192 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5521 -3.8526 9 14 1.2470 0.3979 -5.2572 10 1 2.2250 1.4395 -5.6619 11 1 1.0817 -0.5816 -6.3611 12 1 -0.0610 1.0354 -4.9610 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.5012 0.0428 4.8771 17 6 2.3107 0.9270 5.5715 18 6 1.7963 1.5901 6.6733 19 9 2.5759 2.4586 7.3540 20 7 0.5542 1.3799 7.0688 21 6 -0.2428 0.5416 6.4348 22 6 0.2003 -0.1521 5.3226 23 9 -0.6219 -1.0094 4.6790 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 2.8599 -1.8834 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2493 35 1 1.8198 0.9436 2.4401 36 1 1.6588 -1.7221 3.6873 37 1 3.1118 -0.6939 3.6869 38 1 3.3288 1.1000 5.2553 39 1 -1.2529 0.3951 6.7879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824396380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -65.914587 kcal Electronic energy + Delta-G solvation = -21997.782036 eV Core-core repulsion = 18383.024467 eV Total energy + Delta-G solvation = -3614.757569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.35498 -49.15915 -40.38305 -37.82671 -35.31193 -32.87891 -31.82836 -30.80446 -27.50412 -26.66424 -26.37275 -24.73939 -24.06754 -22.60373 -21.96577 -18.42609 -18.34045 -17.84848 -17.59905 -16.62679 -16.27201 -15.74349 -15.48627 -15.11981 -14.87384 -14.63247 -14.31140 -14.22446 -13.78094 -13.42782 -13.12207 -12.91029 -12.78982 -12.63364 -12.17150 -11.99448 -11.77045 -11.02053 -10.91896 -10.80475 -10.53622 -10.40210 -10.24832 -10.22171 -10.13482 -9.73922 -9.17682 -9.06364 -8.87858 -8.34211 -8.31497 -5.98802 -3.99056 0.36206 0.48701 2.97567 3.10835 3.31778 3.38672 3.41578 3.61908 3.88788 4.20562 4.31100 4.41468 4.50576 4.87333 5.00406 5.11411 5.36607 5.37288 5.46783 5.52689 5.63697 5.71116 5.91206 6.13994 6.15822 6.24834 6.43229 6.61011 6.71422 6.78943 7.04435 7.06724 7.15642 7.21251 7.27759 7.46496 7.66449 7.80941 8.01117 8.45137 9.06190 9.64037 11.12834 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.003131 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.486980 B = 8940.688450 C = 9184.547225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.679 5.679 15 C 0.093 3.907 16 C -0.042 4.042 17 C -0.160 4.160 18 C 0.294 3.706 19 F -0.109 7.109 20 N -0.489 5.489 21 C 0.107 3.893 22 C 0.066 3.934 23 F -0.112 7.112 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.341 0.659 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.156 0.844 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 3.122 20.285 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.312 5.312 15 C -0.036 4.036 16 C -0.051 4.051 17 C -0.182 4.182 18 C 0.141 3.859 19 F -0.088 7.088 20 N -0.203 5.203 21 C -0.051 4.051 22 C 0.044 3.956 23 F -0.090 7.090 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.174 0.826 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.457 3.124 20.866 21.241 hybrid contribution 1.026 0.271 -1.581 1.904 sum -1.430 3.394 19.285 19.634 Atomic orbital electron populations 1.21601 0.94862 1.00695 1.00206 1.20643 0.95983 0.94999 0.94242 1.21781 0.99723 0.96725 1.00483 1.19122 0.95886 0.95230 0.90088 1.21227 1.30820 1.11960 0.90591 0.92281 1.25012 0.95399 0.95088 0.99075 1.69967 1.37334 1.23111 1.23329 0.86659 0.79261 0.79412 0.83072 1.20819 1.21355 1.19891 1.22170 0.96547 0.98295 0.88749 1.60629 1.63587 1.06535 1.00402 1.20883 0.97757 0.98259 0.86694 1.20375 0.92073 0.95822 0.96859 1.21730 1.02754 0.98014 0.95710 1.18059 0.87128 0.90432 0.90272 1.91647 1.71580 1.66464 1.79097 1.67031 1.03838 1.17725 1.31735 1.22631 0.99875 0.91494 0.91114 1.18558 0.89113 0.93733 0.94238 1.91591 1.70528 1.66702 1.80195 0.93956 0.92620 0.94063 0.94020 0.91585 0.94907 0.96894 0.96606 0.93141 0.95430 0.91156 0.83949 0.88958 0.93206 0.82599 0.80355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 2 C -0.06 -1.11 0.60 -154.51 -0.09 -1.21 16 3 C -0.13 -2.31 7.89 37.16 0.29 -2.01 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.07 1.12 4.65 -3.82 -0.02 1.11 16 14 N -0.68 -8.93 5.70 -115.05 -0.66 -9.58 16 15 C 0.09 0.98 5.61 -4.98 -0.03 0.96 16 16 C -0.04 -0.42 5.43 -104.27 -0.57 -0.98 16 17 C -0.16 -1.42 9.75 -39.37 -0.38 -1.81 16 18 C 0.29 3.04 8.41 -17.36 -0.15 2.89 16 19 F -0.11 -1.15 17.29 2.25 0.04 -1.12 16 20 N -0.49 -5.30 10.37 -13.54 -0.14 -5.44 16 21 C 0.11 0.98 11.17 -17.47 -0.20 0.79 16 22 C 0.07 0.67 7.29 -39.29 -0.29 0.38 16 23 F -0.11 -1.29 16.80 2.25 0.04 -1.25 16 24 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 25 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 29 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.34 4.32 6.76 -39.29 -0.27 4.05 16 36 H 0.09 1.00 8.02 -51.93 -0.42 0.58 16 37 H 0.05 0.46 8.04 -51.93 -0.42 0.05 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -29.57 329.50 -6.97 -36.55 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.34 Total: -1.16 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.60 Total: -13.53 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.06 Total: -40.80 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.57 -6.97 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824396380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.368 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds