Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47096 * 240.00158 * 2 1 3 5 5 C 1.50704 * 109.47153 * 59.99740 * 4 2 1 6 6 H 1.07997 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99793 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46885 * 90.00107 * 9 7 5 11 11 H 1.48502 * 109.47132 * 209.99967 * 9 7 5 12 12 H 1.48495 * 109.47046 * 330.00178 * 9 7 5 13 13 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 14 14 N 1.46904 * 109.46950 * 300.00123 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47107 * 179.97438 * 15 14 13 17 17 C 1.38536 * 120.78197 * 259.71951 * 16 15 14 18 18 C 1.38508 * 119.16325 * 179.78173 * 17 16 15 19 19 F 1.35104 * 119.62305 * 180.27295 * 18 17 16 20 20 N 1.32038 * 120.75610 * 0.50046 * 18 17 16 21 21 C 1.31905 * 121.71428 * 359.75183 * 20 18 17 22 22 C 1.38371 * 120.76026 * 359.97438 * 21 20 18 23 23 F 1.35098 * 120.41208 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 25 25 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 26 26 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 29 29 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 30 30 H 1.08995 * 109.47051 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46901 * 300.00144 * 4 2 1 32 32 H 0.97005 * 119.99618 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47319 * 180.02562 * 13 2 1 34 34 H 1.09003 * 109.47435 * 59.99376 * 13 2 1 35 35 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 37 37 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 38 38 H 1.08000 * 120.42065 * 0.02562 * 17 16 15 39 39 H 1.08002 * 119.62192 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5521 -3.8526 9 14 1.2470 0.3979 -5.2572 10 1 2.2250 1.4395 -5.6619 11 1 1.0817 -0.5816 -6.3611 12 1 -0.0610 1.0354 -4.9610 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.5012 0.0428 4.8771 17 6 2.3107 0.9270 5.5715 18 6 1.7963 1.5901 6.6733 19 9 2.5759 2.4586 7.3540 20 7 0.5542 1.3799 7.0688 21 6 -0.2428 0.5416 6.4348 22 6 0.2003 -0.1521 5.3226 23 9 -0.6219 -1.0094 4.6790 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 2.8599 -1.8834 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2493 35 1 1.8198 0.9436 2.4401 36 1 1.6588 -1.7221 3.6873 37 1 3.1118 -0.6939 3.6869 38 1 3.3288 1.1000 5.2553 39 1 -1.2529 0.3951 6.7879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824396380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -83.652031 kcal Electronic energy + Delta-G solvation = -21998.551189 eV Core-core repulsion = 18383.024467 eV Total energy + Delta-G solvation = -3615.526723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.13102 -49.97897 -41.13814 -39.21201 -36.48434 -34.56411 -33.15551 -31.54861 -29.16842 -27.97426 -27.88506 -26.14185 -24.85804 -24.12142 -22.97914 -19.67899 -19.19394 -18.66181 -18.59380 -18.31491 -17.41268 -16.70318 -16.53531 -16.49776 -15.86226 -15.69468 -15.57351 -15.27333 -14.79085 -14.61442 -14.35674 -14.21160 -13.88112 -13.81838 -13.71946 -13.25929 -13.11183 -12.77333 -12.69727 -12.40806 -12.23360 -12.15179 -11.90561 -11.37631 -11.10947 -10.96030 -10.84736 -10.70215 -10.49317 -9.91474 -9.38230 -8.13423 -6.19900 -0.37407 -0.25164 1.41331 1.42056 1.52402 2.23094 2.38308 2.44432 2.88470 3.06806 3.20879 3.46504 3.50862 3.60574 4.12581 4.16210 4.20411 4.31392 4.36570 4.43633 4.62354 4.71314 4.77581 4.78120 4.89017 4.96632 5.08452 5.21637 5.22874 5.42717 5.53400 5.55731 5.59798 5.64600 5.87875 5.93111 5.96754 6.34114 6.37488 6.42367 6.95451 7.47469 8.98772 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.003131 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.486980 B = 8940.688450 C = 9184.547225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.084 3.916 14 N -0.680 5.680 15 C 0.095 3.905 16 C -0.045 4.045 17 C -0.147 4.147 18 C 0.283 3.717 19 F -0.114 7.114 20 N -0.508 5.508 21 C 0.113 3.887 22 C 0.057 3.943 23 F -0.122 7.122 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.066 0.934 30 H -0.013 1.013 31 H -0.015 1.015 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.347 0.653 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.180 0.820 39 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 4.389 21.341 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.188 1.188 13 C -0.045 4.045 14 N -0.313 5.313 15 C -0.033 4.033 16 C -0.054 4.054 17 C -0.168 4.168 18 C 0.130 3.870 19 F -0.093 7.093 20 N -0.223 5.223 21 C -0.045 4.045 22 C 0.034 3.966 23 F -0.100 7.100 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.197 0.803 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.840 4.409 21.942 22.560 hybrid contribution 1.140 -0.142 -1.836 2.166 sum -1.701 4.267 20.106 20.624 Atomic orbital electron populations 1.21500 0.94537 1.00068 1.00319 1.20501 0.96118 0.95682 0.93307 1.21692 0.99688 0.95550 1.01098 1.19002 0.94116 0.94096 0.92520 1.21629 1.30149 1.11905 0.91535 0.91730 1.25885 0.95766 0.95879 1.02481 1.70103 1.38942 1.24821 1.23997 0.85612 0.79089 0.78261 0.79106 1.20068 1.21338 1.18839 1.21831 0.96442 0.97557 0.88650 1.60496 1.63818 1.06762 1.00240 1.20875 0.98909 0.97902 0.85644 1.20304 0.92132 0.96156 0.96779 1.21854 1.03538 0.96781 0.94668 1.18247 0.87189 0.90765 0.90780 1.91635 1.71681 1.66679 1.79270 1.67052 1.04387 1.18412 1.32417 1.22975 1.00625 0.90459 0.90423 1.18727 0.89247 0.93903 0.94676 1.91568 1.70882 1.67113 1.80462 0.91641 0.94488 0.95082 0.94038 0.93639 0.91543 0.99450 0.99662 0.93188 0.95259 0.92081 0.83309 0.89292 0.91296 0.80297 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 8.06 71.98 0.58 -3.37 16 2 C -0.06 -2.10 0.60 -52.18 -0.03 -2.13 16 3 C -0.12 -4.18 7.89 71.98 0.57 -3.61 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -27.96 7.65 25.60 0.20 -27.77 16 6 H 0.06 3.38 5.68 -2.91 -0.02 3.37 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -56.60 13.29 21.45 0.28 -56.31 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 13 C 0.08 2.58 4.65 86.30 0.40 2.98 16 14 N -0.68 -16.24 5.70 -517.92 -2.95 -19.19 16 15 C 0.10 1.78 5.61 85.56 0.48 2.26 16 16 C -0.04 -0.77 5.43 -19.64 -0.11 -0.88 16 17 C -0.15 -2.21 9.75 22.41 0.22 -1.99 16 18 C 0.28 5.28 8.41 84.73 0.71 5.99 16 19 F -0.11 -2.22 17.29 44.97 0.78 -1.45 16 20 N -0.51 -10.08 10.37 -196.76 -2.04 -12.12 16 21 C 0.11 1.84 11.17 84.71 0.95 2.79 16 22 C 0.06 1.04 7.29 22.46 0.16 1.20 16 23 F -0.12 -2.61 16.80 44.97 0.76 -1.85 16 24 H 0.06 2.10 7.60 -2.39 -0.02 2.09 16 25 H 0.04 1.48 6.62 -2.39 -0.02 1.46 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 29 H 0.07 1.80 6.57 -2.39 -0.02 1.79 16 30 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.35 7.64 6.76 -89.69 -0.61 7.04 16 36 H 0.09 1.76 8.02 -2.39 -0.02 1.74 16 37 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 38 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -64.14 329.50 4.02 -60.11 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.46 Total: 6.87 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.71 Total: -22.12 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -4.71 Total: -87.62 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 1.53 Total: -3.30 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.14 4.02 -60.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824396380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.537 kcal (2) G-P(sol) polarization free energy of solvation -64.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds