Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47219 * 270.00286 * 3 2 1 5 5 H 1.48500 * 109.47001 * 30.00058 * 3 2 1 6 6 H 1.48498 * 109.46999 * 149.99789 * 3 2 1 7 7 C 1.37876 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99216 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00383 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88565 * 62.42844 * 9 7 2 11 11 C 1.55154 * 111.03939 * 186.33190 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.59058 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21584 * 119.99758 * 180.02562 * 14 13 12 16 16 N 1.34780 * 120.00256 * 359.97438 * 14 13 12 17 17 O 1.41597 * 119.99729 * 180.02562 * 16 14 13 18 18 C 1.42903 * 113.99699 * 180.02562 * 17 16 14 19 19 C 1.54268 * 110.03347 * 272.90673 * 18 17 16 20 20 C 1.54958 * 104.16041 * 217.13709 * 19 18 17 21 21 C 1.54890 * 102.77730 * 37.88632 * 20 19 18 22 22 C 1.53870 * 110.03392 * 155.68815 * 18 17 16 23 23 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 24 24 H 0.97010 * 119.99834 * 0.02562 * 1 2 3 25 25 H 0.96703 * 114.00194 * 297.57527 * 10 9 7 26 26 H 1.09002 * 110.72290 * 271.95744 * 11 9 7 27 27 H 1.08994 * 110.71922 * 35.05213 * 11 9 7 28 28 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 29 29 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 30 30 H 0.96999 * 119.99504 * 359.97438 * 16 14 13 31 31 H 1.09005 * 110.02020 * 34.29453 * 18 17 16 32 32 H 1.09001 * 110.48169 * 335.78393 * 19 18 17 33 33 H 1.08997 * 110.48750 * 98.42520 * 19 18 17 34 34 H 1.09004 * 110.71846 * 279.57130 * 20 19 18 35 35 H 1.08999 * 110.76823 * 156.21837 * 20 19 18 36 36 H 1.09001 * 110.48435 * 203.40704 * 21 20 19 37 37 H 1.08992 * 110.48881 * 80.76398 * 21 20 19 38 38 H 1.09006 * 110.03306 * 238.57119 * 22 18 17 39 39 H 1.09002 * 110.03046 * 0.02562 * 22 18 17 40 40 H 1.09002 * 110.36696 * 265.26054 * 23 13 12 41 41 H 1.08995 * 110.36608 * 143.04891 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2190 -3.7012 0.1585 12 6 1.3261 -4.7807 0.8058 13 7 0.2038 -4.0866 1.4600 14 6 -0.8106 -4.6778 2.1217 15 8 -1.6861 -3.9997 2.6236 16 7 -0.8551 -6.0208 2.2261 17 8 -1.9212 -6.6419 2.9209 18 6 -1.8408 -8.0683 2.9536 19 6 -2.5087 -8.6642 1.6971 20 6 -3.2055 -9.9492 2.2115 21 6 -3.7313 -9.5199 3.6038 22 6 -2.6174 -8.6124 4.1654 23 6 0.3753 -2.6347 1.2701 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2254 -1.9558 -1.2759 26 1 2.5835 -4.0340 -0.8133 27 1 3.0512 -3.4421 0.8129 28 1 0.9471 -5.4568 0.0393 29 1 1.8989 -5.3417 1.5442 30 1 -0.1572 -6.5618 1.8247 31 1 -0.7983 -8.3822 3.0066 32 1 -3.2430 -7.9693 1.2896 33 1 -1.7579 -8.9108 0.9465 34 1 -2.4892 -10.7656 2.3039 35 1 -4.0305 -10.2300 1.5568 36 1 -3.8723 -10.3911 4.2435 37 1 -4.6631 -8.9633 3.5047 38 1 -1.9519 -9.1910 4.8062 39 1 -3.0560 -7.7885 4.7283 40 1 0.8834 -2.1971 2.1294 41 1 -0.5916 -2.1553 1.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826850272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -76.548310 kcal Electronic energy + Delta-G solvation = -23056.285871 eV Core-core repulsion = 19552.154704 eV Total energy + Delta-G solvation = -3504.131166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60126 -38.77377 -37.22363 -35.66089 -34.21946 -32.21832 -31.69026 -29.77978 -28.99846 -27.87180 -27.43530 -24.92031 -22.70444 -21.03257 -20.82015 -19.77673 -19.50973 -18.18132 -17.34150 -17.00089 -15.82450 -15.50114 -15.31146 -15.03393 -14.64386 -14.36509 -14.07543 -13.62091 -13.35273 -13.06765 -12.82274 -12.79620 -12.20236 -12.02402 -11.65600 -11.48645 -11.43143 -11.37525 -11.10085 -11.02375 -10.92327 -10.84114 -10.63711 -10.61287 -10.45783 -10.18850 -9.60531 -9.36551 -8.69358 -8.62097 -8.35757 -7.72401 -6.26171 -4.36269 1.96268 3.22476 3.30226 3.32300 3.76832 4.07030 4.26567 4.28120 4.29645 4.47123 4.73781 4.98967 5.01119 5.15359 5.18649 5.35427 5.35909 5.38273 5.59152 5.60757 5.61570 5.72632 5.76463 5.91119 5.91696 5.97355 6.05107 6.06437 6.49460 6.67359 6.86128 6.89387 7.10936 7.25982 7.32733 7.58470 7.75648 8.03889 8.45446 8.67725 9.16604 9.31077 9.39417 10.80820 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039845 B = 0.003409 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.560576 B = 8211.666440 C = 8444.204911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.102 3.898 13 N -0.622 5.622 14 C 0.733 3.267 15 O -0.578 6.578 16 N -0.619 5.619 17 O -0.124 6.124 18 C 0.056 3.944 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.116 4.116 23 C 0.116 3.884 24 H 0.271 0.729 25 H 0.382 0.618 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -18.000 4.099 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.022 4.022 13 N -0.363 5.363 14 C 0.435 3.565 15 O -0.455 6.455 16 N -0.325 5.325 17 O -0.127 6.127 18 C -0.003 4.003 19 C -0.188 4.188 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.005 4.005 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.927 -17.812 4.541 18.482 hybrid contribution 0.473 0.767 -0.088 0.905 sum -1.454 -17.045 4.452 17.676 Atomic orbital electron populations 1.69721 1.05975 1.27963 1.49236 1.25090 0.95044 0.99783 0.93337 0.86399 0.79753 0.82458 0.78260 1.20421 1.21013 1.19711 1.21433 0.93617 0.89956 1.52650 0.91479 1.19641 0.86614 0.91587 0.81369 1.86100 1.51529 1.57210 1.44276 1.22580 0.97483 0.95076 1.00145 1.22035 0.88362 0.96226 0.95549 1.47900 1.22998 1.09719 1.55681 1.14973 0.82291 0.79333 0.79889 1.90908 1.39247 1.62279 1.53017 1.46348 1.22031 1.04123 1.60038 1.90608 1.32475 1.18170 1.71427 1.23321 1.00013 0.80904 0.96109 1.22988 1.00717 0.97741 0.97335 1.22451 1.00027 0.96996 0.96583 1.22353 0.98334 0.98992 0.96388 1.22146 0.97693 0.99534 0.96134 1.23229 1.02731 0.74855 0.99669 0.91940 0.76841 0.90697 0.90261 0.92577 0.93032 0.76194 0.90621 0.90007 0.91246 0.91351 0.91152 0.91221 0.91090 0.90405 0.89897 0.92220 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 10.69 55.43 0.59 -23.18 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.81 8.27 -34.44 -0.28 -14.10 16 8 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 9 C 0.25 5.93 0.87 -89.63 -0.08 5.85 16 10 O -0.58 -14.66 13.16 -35.23 -0.46 -15.13 16 11 C -0.11 -2.20 6.13 -24.90 -0.15 -2.35 16 12 C 0.10 1.73 6.17 -2.92 -0.02 1.71 16 13 N -0.62 -13.04 3.34 -176.02 -0.59 -13.63 16 14 C 0.73 15.91 8.64 -86.92 -0.75 15.16 16 15 O -0.58 -15.23 17.00 -12.86 -0.22 -15.45 16 16 N -0.62 -10.43 6.34 27.63 0.18 -10.25 16 17 O -0.12 -2.03 10.66 -29.62 -0.32 -2.35 16 18 C 0.06 0.61 3.53 -25.61 -0.09 0.52 16 19 C -0.15 -1.49 6.57 -25.03 -0.16 -1.65 16 20 C -0.12 -0.94 6.91 -24.70 -0.17 -1.12 16 21 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 22 C -0.12 -1.08 6.61 -25.62 -0.17 -1.25 16 23 C 0.12 2.82 5.38 -2.53 -0.01 2.80 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 25 H 0.38 9.92 7.56 45.56 0.34 10.27 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.40 5.27 7.42 -40.82 -0.30 4.97 16 31 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 32 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 41 H 0.09 2.39 7.32 -51.93 -0.38 2.01 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -31.38 334.98 -8.72 -40.09 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.77 Total: 13.43 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.16 Total: 6.19 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.18 Total: -47.06 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.00 Total: -32.92 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.38 -8.72 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826850272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.458 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds