Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.53004 * 109.46968 * 240.00224 * 2 1 3 5 5 C 1.50696 * 109.47156 * 64.99797 * 4 2 1 6 6 O 1.20826 * 120.00363 * 359.97438 * 5 4 2 7 7 O 1.34226 * 120.00329 * 179.97438 * 5 4 2 8 8 C 1.50693 * 109.47310 * 120.00503 * 2 1 3 9 9 O 1.21286 * 120.00527 * 120.00218 * 8 2 1 10 10 N 1.34780 * 119.99690 * 299.99554 * 8 2 1 11 11 C 1.46503 * 119.99987 * 180.02562 * 10 8 2 12 12 C 1.53071 * 109.45178 * 84.78906 * 11 10 8 13 13 C 1.53201 * 109.29371 * 181.24494 * 12 11 10 14 14 N 1.46928 * 108.89275 * 305.57634 * 13 12 11 15 15 C 1.36934 * 120.63265 * 233.51651 * 14 13 12 16 16 H 1.07997 * 119.99862 * 151.82898 * 15 14 13 17 17 C 1.38806 * 120.00015 * 331.83027 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08772 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.08448 * 17 15 14 20 20 H 1.48503 * 109.47142 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 300.00095 * 19 17 15 23 23 C 1.46932 * 118.73342 * 53.53882 * 14 13 12 24 24 C 1.53045 * 109.45960 * 205.00187 * 11 10 8 25 25 H 1.09005 * 109.47254 * 299.99707 * 1 2 3 26 26 H 1.08997 * 109.47649 * 59.99843 * 1 2 3 27 27 H 1.09005 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46998 * 185.00010 * 4 2 1 29 29 H 1.09002 * 109.47327 * 304.99829 * 4 2 1 30 30 H 0.96698 * 117.00490 * 179.97438 * 7 5 4 31 31 H 0.96995 * 120.00081 * 359.97438 * 10 8 2 32 32 H 1.09001 * 109.45637 * 324.97326 * 11 10 8 33 33 H 1.09002 * 109.39343 * 61.36736 * 12 11 10 34 34 H 1.09003 * 109.62467 * 301.25963 * 12 11 10 35 35 H 1.09000 * 109.58250 * 185.72113 * 13 12 11 36 36 H 1.08995 * 109.58477 * 65.43833 * 13 12 11 37 37 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.59017 * 66.18099 * 23 14 13 39 39 H 1.09009 * 109.58200 * 186.46074 * 23 14 13 40 40 H 1.09002 * 109.49555 * 58.66185 * 24 11 10 41 41 H 1.08999 * 109.49562 * 298.56688 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0132 1.0831 -2.3638 7 8 1.9838 -0.3894 -3.6952 8 6 2.0323 -0.7105 1.2303 9 8 2.7297 -1.6966 1.1191 10 7 1.7068 -0.2500 2.4545 11 6 2.1956 -0.9403 3.6506 12 6 3.6008 -0.4376 3.9909 13 6 4.1208 -1.1840 5.2236 14 7 3.1454 -1.0406 6.3131 15 6 3.5331 -0.5698 7.5391 16 1 2.8256 -0.0458 8.1646 17 6 4.8352 -0.7661 7.9779 18 7 5.5968 -1.6685 7.3963 19 14 5.5070 0.2505 9.3938 20 1 4.6811 0.0177 10.6058 21 1 6.9111 -0.1483 9.6669 22 1 5.4630 1.6905 9.0339 23 6 1.7463 -1.4125 6.0620 24 6 1.2512 -0.6612 4.8222 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1262 -0.7995 -1.2057 29 1 1.6053 -1.7198 -1.2953 30 1 1.7053 0.1436 -4.4524 31 1 1.1495 0.5389 2.5435 32 1 2.2321 -2.0132 3.4613 33 1 3.5616 0.6310 4.2022 34 1 4.2682 -0.6180 3.1481 35 1 5.0768 -0.7602 5.5309 36 1 4.2490 -2.2396 4.9844 37 1 6.5066 -1.8059 7.7032 38 1 1.6789 -2.4866 5.8896 39 1 1.1360 -1.1417 6.9238 40 1 0.2467 -1.0000 4.5684 41 1 1.2335 0.4090 5.0281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827279777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -146.131727 kcal Electronic energy + Delta-G solvation = -22788.617677 eV Core-core repulsion = 19281.469147 eV Total energy + Delta-G solvation = -3507.148530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62286 -40.81209 -39.02624 -37.23954 -36.02439 -35.32705 -33.83871 -31.76487 -31.22980 -29.27314 -27.04363 -25.36722 -23.90724 -23.62991 -22.19739 -21.23500 -20.46005 -19.26067 -18.76067 -18.25122 -17.27023 -17.07143 -16.84337 -16.62538 -16.16399 -15.59844 -15.35153 -15.02096 -14.85070 -14.61908 -14.35711 -14.04758 -13.89356 -13.65465 -13.24606 -13.18759 -12.99575 -12.66009 -12.56002 -12.38560 -12.27854 -12.13676 -12.12302 -12.06018 -11.84889 -11.53610 -11.51334 -11.36802 -10.72947 -10.57036 -9.97878 -8.70796 -7.87299 -5.33782 1.20639 1.47839 1.50503 1.57228 1.64192 1.88277 2.47040 2.51958 3.28538 3.46787 3.66433 3.81965 3.89805 3.95656 4.09977 4.28032 4.34715 4.48229 4.49254 4.60820 4.67554 4.68377 4.81018 4.89090 4.92156 5.02603 5.06630 5.08656 5.14329 5.27622 5.32776 5.46929 5.57246 5.64344 5.67119 5.70513 6.38837 6.60125 7.01994 7.13755 7.28658 7.84829 8.37304 9.19534 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037250 B = 0.003136 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.490040 B = 8926.866566 C = 9179.480195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.116 0.884 4 C -0.099 4.099 5 C 0.492 3.508 6 O -0.538 6.538 7 O -0.514 6.514 8 C 0.516 3.484 9 O -0.581 6.581 10 N -0.708 5.708 11 C 0.161 3.839 12 C -0.131 4.131 13 C 0.182 3.818 14 N -0.610 5.610 15 C -0.263 4.263 16 H 0.073 0.927 17 C -0.054 4.054 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.277 1.277 23 C 0.141 3.859 24 C -0.122 4.122 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.429 0.571 31 H 0.414 0.586 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.054 0.946 36 H -0.011 1.011 37 H 0.249 0.751 38 H 0.012 0.988 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 5.529 -18.848 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.133 0.867 4 C -0.137 4.137 5 C 0.336 3.664 6 O -0.428 6.428 7 O -0.328 6.328 8 C 0.303 3.697 9 O -0.461 6.461 10 N -0.359 5.359 11 C 0.057 3.943 12 C -0.171 4.171 13 C 0.056 3.944 14 N -0.334 5.334 15 C -0.393 4.393 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.584 5.584 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.224 1.224 22 H -0.203 1.203 23 C 0.015 3.985 24 C -0.161 4.161 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.291 0.709 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.007 0.993 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.399 4.826 -18.509 22.267 hybrid contribution 0.604 0.727 0.421 1.035 sum -10.795 5.553 -18.088 21.784 Atomic orbital electron populations 1.21911 0.90867 1.03011 1.04589 1.21036 0.99329 1.00893 0.89890 0.86656 1.21120 1.04873 1.00172 0.87536 1.23282 0.74816 0.83083 0.85192 1.90694 1.38865 1.25776 1.87504 1.84509 1.74351 1.56731 1.17240 1.20948 0.79255 0.84004 0.85451 1.90719 1.39695 1.28355 1.87369 1.46023 1.52992 1.32131 1.04769 1.20666 0.93253 0.96108 0.84320 1.22317 0.96784 1.00366 0.97661 1.20461 0.93331 0.94736 0.85881 1.44346 1.04573 1.75565 1.08870 1.19532 0.96392 1.28329 0.95092 0.90933 1.25875 0.99151 0.98722 1.01155 1.70199 1.08678 1.34090 1.45452 0.85312 0.76786 0.78729 0.79442 1.19864 1.22362 1.20261 1.21047 0.85440 0.95585 0.96427 1.22131 0.98382 1.01853 0.93750 0.90329 0.90169 0.92134 0.87003 0.86442 0.70888 0.74895 0.92272 0.92156 0.93392 0.92793 0.99271 0.94166 0.97046 0.91517 0.88938 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.83 71.98 0.64 -1.53 16 2 C -0.09 -1.63 2.37 -11.54 -0.03 -1.66 16 3 H 0.12 1.92 7.96 -2.39 -0.02 1.90 16 4 C -0.10 -1.71 4.63 29.85 0.14 -1.57 16 5 C 0.49 7.96 8.05 71.23 0.57 8.53 16 6 O -0.54 -10.92 14.73 21.96 0.32 -10.60 16 7 O -0.51 -6.12 13.42 -51.38 -0.69 -6.81 16 8 C 0.52 13.28 7.12 87.65 0.62 13.90 16 9 O -0.58 -20.13 15.58 -3.05 -0.05 -20.17 16 10 N -0.71 -17.26 4.97 -442.34 -2.20 -19.46 16 11 C 0.16 5.26 2.41 45.03 0.11 5.37 16 12 C -0.13 -5.17 5.66 30.69 0.17 -4.99 16 13 C 0.18 9.16 5.30 86.37 0.46 9.62 16 14 N -0.61 -30.57 3.00 -699.07 -2.09 -32.66 16 15 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 16 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 17 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 18 N -0.94 -56.65 11.20 21.65 0.24 -56.41 16 19 Si 0.97 44.86 29.59 68.60 2.03 46.89 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.14 5.59 6.52 86.36 0.56 6.16 16 24 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 25 H 0.08 0.94 7.57 -2.38 -0.02 0.92 16 26 H 0.08 1.27 5.96 -2.39 -0.01 1.26 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.11 2.05 7.95 -2.39 -0.02 2.03 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.43 1.31 9.10 -74.06 -0.67 0.64 16 31 H 0.41 7.29 8.02 -92.71 -0.74 6.55 16 32 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 3.06 6.06 -2.39 -0.01 3.05 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.07 2.51 7.93 -2.38 -0.02 2.49 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.43 334.20 1.84 -71.59 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.37 Total: 13.45 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 4.64 Total: 14.18 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.05 Total: -108.53 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.41 Total: -37.58 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.43 1.84 -71.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827279777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.542 kcal (2) G-P(sol) polarization free energy of solvation -73.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds