Wall clock time and date at job start Tue Mar 31 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99576 * 2 1 4 4 H 1.48499 * 109.47019 * 270.00466 * 3 2 1 5 5 H 1.48503 * 109.46998 * 30.00339 * 3 2 1 6 6 H 1.48498 * 109.46979 * 150.00382 * 3 2 1 7 7 C 1.37875 * 120.00641 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99526 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47006 * 185.01737 * 9 7 2 11 11 C 1.46905 * 111.00120 * 295.08312 * 10 9 7 12 12 C 1.53237 * 109.33847 * 187.24975 * 11 10 9 13 13 N 1.47074 * 108.52480 * 306.17144 * 12 11 10 14 14 C 1.34784 * 120.88118 * 231.18799 * 13 12 11 15 15 O 1.21271 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99846 * 179.97438 * 14 13 12 17 17 F 1.39895 * 110.43427 * 310.70033 * 16 14 13 18 18 C 1.54886 * 110.48463 * 73.23904 * 16 14 13 19 19 C 1.55242 * 102.58575 * 156.67343 * 18 16 14 20 20 C 1.54265 * 104.23302 * 322.08794 * 19 18 16 21 21 C 1.53876 * 106.60103 * 23.60636 * 20 19 18 22 22 C 1.47083 * 118.23788 * 51.45606 * 13 12 11 23 23 C 1.46897 * 110.99839 * 59.38078 * 10 9 7 24 24 H 0.96993 * 120.00573 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47195 * 65.02179 * 9 7 2 26 26 H 1.08995 * 109.47232 * 305.01968 * 9 7 2 27 27 H 1.08998 * 109.49210 * 67.29416 * 11 10 9 28 28 H 1.08993 * 109.49135 * 307.21040 * 11 10 9 29 29 H 1.09005 * 109.62305 * 186.45862 * 12 11 10 30 30 H 1.08996 * 109.78699 * 65.97833 * 12 11 10 31 31 H 1.08996 * 110.76256 * 275.06547 * 18 16 14 32 32 H 1.09003 * 110.75470 * 38.44218 * 18 16 14 33 33 H 1.08999 * 110.47278 * 203.39610 * 19 18 16 34 34 H 1.09004 * 110.46617 * 80.77704 * 19 18 16 35 35 H 1.09000 * 110.03299 * 264.32411 * 20 19 18 36 36 H 1.08996 * 110.03534 * 142.89317 * 20 19 18 37 37 H 1.08994 * 110.03492 * 240.72181 * 21 20 19 38 38 H 1.09001 * 110.07556 * 119.30169 * 21 20 19 39 39 H 1.08997 * 109.62766 * 68.25599 * 22 13 12 40 40 H 1.08997 * 109.62471 * 188.83176 * 22 13 12 41 41 H 1.08993 * 109.49790 * 292.71035 * 23 10 9 42 42 H 1.09002 * 109.48984 * 52.79053 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2013 -3.6130 0.1200 11 6 3.0767 -3.6880 -1.0574 12 6 3.9250 -4.9617 -0.9786 13 7 4.6218 -4.9797 0.3165 14 6 5.9529 -5.1804 0.3833 15 8 6.5922 -5.3498 -0.6332 16 6 6.6467 -5.1944 1.7210 17 9 6.2751 -4.0766 2.4756 18 6 6.3189 -6.4995 2.4880 19 6 7.5171 -6.6267 3.4668 20 6 8.7310 -6.1462 2.6449 21 6 8.1775 -5.2356 1.5348 22 6 3.8265 -4.7788 1.5374 23 6 2.9829 -3.5064 1.3591 24 1 -0.4850 0.8399 0.0004 25 1 0.6933 -2.5966 -0.9319 26 1 0.5591 -2.5191 0.8413 27 1 3.7306 -2.8163 -1.0805 28 1 2.4687 -3.7113 -1.9617 29 1 4.6556 -4.9655 -1.7876 30 1 3.2828 -5.8385 -1.0611 31 1 5.3802 -6.4019 3.0332 32 1 6.2846 -7.3497 1.8067 33 1 7.6506 -7.6641 3.7733 34 1 7.3682 -5.9870 4.3367 35 1 9.2458 -7.0004 2.2050 36 1 9.4147 -5.5851 3.2818 37 1 8.4237 -5.6478 0.5563 38 1 8.5925 -4.2323 1.6323 39 1 3.1724 -5.6366 1.6936 40 1 4.4920 -4.6617 2.3927 41 1 3.6381 -2.6372 1.3024 42 1 2.3069 -3.3980 2.2073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:12 Heat of formation + Delta-G solvation = -98.947561 kcal Electronic energy + Delta-G solvation = -23862.853063 eV Core-core repulsion = 20370.123381 eV Total energy + Delta-G solvation = -3492.729681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15293 -41.27791 -39.32286 -37.76891 -36.12665 -34.36967 -32.29602 -30.47062 -29.86574 -29.35799 -27.17179 -24.77110 -24.47453 -22.99749 -21.75206 -21.29025 -20.21064 -18.91101 -18.30612 -17.70179 -17.16137 -16.76424 -16.39177 -16.19439 -16.05850 -15.80180 -15.51262 -15.23148 -15.12175 -14.60932 -14.37797 -13.97878 -13.68483 -13.58836 -13.15270 -13.01674 -12.97844 -12.62957 -12.58185 -12.52330 -12.29248 -12.23989 -12.14662 -11.98438 -11.85495 -11.83401 -11.57512 -11.35764 -10.75510 -10.64269 -9.87887 -9.11136 -8.20654 -6.39428 1.23440 1.31844 1.33213 1.43108 1.76254 2.32877 2.96560 3.04704 3.18222 3.26251 3.33241 3.59459 3.94455 4.03360 4.15532 4.23663 4.30090 4.31414 4.36583 4.39169 4.46811 4.56164 4.64853 4.69571 4.78495 4.86483 4.96953 4.99189 5.05190 5.12958 5.15515 5.17883 5.23287 5.28548 5.37773 5.40127 5.69364 5.95474 6.11128 6.26367 6.39709 6.79961 6.82976 7.32029 8.81962 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.004549 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.840487 B = 6153.937216 C = 6509.551682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.559 4.559 8 H 0.046 0.954 9 C 0.200 3.800 10 N -0.533 5.533 11 C 0.053 3.947 12 C 0.123 3.877 13 N -0.598 5.598 14 C 0.498 3.502 15 O -0.564 6.564 16 C 0.093 3.907 17 F -0.194 7.194 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.138 4.138 22 C 0.104 3.896 23 C 0.053 3.947 24 H 0.267 0.733 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.010 0.990 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.014 0.986 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.161 -15.226 7.460 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.598 4.598 8 H 0.064 0.936 9 C 0.074 3.926 10 N -0.257 5.257 11 C -0.076 4.076 12 C 0.000 4.000 13 N -0.329 5.329 14 C 0.285 3.715 15 O -0.444 6.444 16 C 0.072 3.928 17 F -0.174 7.174 18 C -0.172 4.172 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.176 4.176 22 C -0.018 4.018 23 C -0.076 4.076 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.032 0.968 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.037 -15.604 6.967 22.115 hybrid contribution 0.268 2.476 -0.432 2.528 sum 14.305 -13.128 6.536 20.487 Atomic orbital electron populations 1.70028 1.07274 1.27944 1.50778 1.25701 0.95566 1.02450 0.94453 0.85672 0.78630 0.79708 0.78382 1.20034 1.20077 1.19926 1.21914 0.92917 0.93296 1.51640 0.93557 1.19446 0.91061 0.86233 0.95897 1.62456 1.17177 1.44192 1.01837 1.22237 0.94798 0.95762 0.94814 1.21770 0.94987 0.98081 0.85147 1.48301 1.06759 1.68705 1.09151 1.21191 0.82160 0.76465 0.91668 1.90647 1.65156 1.51453 1.37106 1.22147 0.97230 0.86328 0.87110 1.92815 1.92273 1.54949 1.77383 1.23263 1.01744 0.93434 0.98788 1.22467 0.92238 1.03457 0.97378 1.22153 0.98347 0.99166 0.95886 1.22690 0.89863 1.02594 1.02449 1.22517 0.94624 0.98006 0.86678 1.22309 0.95797 0.95909 0.93631 0.92437 0.97356 0.96592 0.97133 0.90140 0.89523 0.88789 0.88250 0.88590 0.88335 0.90533 0.89793 0.90101 0.89349 0.90756 0.88473 0.86777 0.96759 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 13.29 21.45 0.28 -54.03 16 2 C 0.02 1.04 5.46 84.65 0.46 1.50 16 3 Si 0.95 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.56 -31.21 7.75 25.60 0.20 -31.01 16 8 H 0.05 2.64 5.88 -2.91 -0.02 2.62 16 9 C 0.20 10.36 5.11 85.56 0.44 10.80 16 10 N -0.53 -22.34 4.83 -898.90 -4.34 -26.68 16 11 C 0.05 2.08 5.24 86.38 0.45 2.53 16 12 C 0.12 3.90 6.60 86.35 0.57 4.47 16 13 N -0.60 -18.43 3.00 -817.06 -2.45 -20.88 16 14 C 0.50 15.32 6.82 87.66 0.60 15.92 16 15 O -0.56 -20.24 14.86 -3.00 -0.04 -20.29 16 16 C 0.09 2.24 0.91 -10.46 -0.01 2.23 16 17 F -0.19 -5.34 14.42 44.97 0.65 -4.69 16 18 C -0.13 -2.20 5.66 32.01 0.18 -2.02 16 19 C -0.12 -1.46 6.84 31.79 0.22 -1.24 16 20 C -0.12 -1.65 6.80 31.32 0.21 -1.43 16 21 C -0.14 -2.94 6.05 31.32 0.19 -2.75 16 22 C 0.10 2.93 5.74 86.50 0.50 3.42 16 23 C 0.05 2.00 5.17 86.54 0.45 2.44 16 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.01 0.46 8.07 -2.39 -0.02 0.44 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.01 0.47 6.92 -2.39 -0.02 0.45 16 28 H 0.08 3.08 8.05 -2.39 -0.02 3.06 16 29 H 0.09 2.79 7.06 -2.38 -0.02 2.78 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 31 H 0.10 1.44 7.00 -2.39 -0.02 1.42 16 32 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 2.11 6.77 -2.39 -0.02 2.10 16 38 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.11 2.86 3.91 -2.39 -0.01 2.85 16 41 H 0.01 0.63 6.79 -2.39 -0.02 0.61 16 42 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 Total: -1.00 -66.59 325.44 1.58 -65.00 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.01 Total: 10.09 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.45 Total: 4.87 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -6.51 Total: -101.60 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.04 Total: -20.29 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.65 Total: -4.69 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.59 1.58 -65.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.946 kcal (2) G-P(sol) polarization free energy of solvation -66.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds