Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.64327 * 2 1 4 4 O 1.20827 * 120.00006 * 118.31212 * 3 2 1 5 5 O 1.34233 * 119.99962 * 298.31039 * 3 2 1 6 6 C 1.55162 * 110.87065 * 123.24924 * 2 1 3 7 7 C 1.55126 * 101.48702 * 82.76526 * 6 2 1 8 8 N 1.47426 * 104.72391 * 37.29271 * 7 6 2 9 9 C 1.34774 * 125.64878 * 155.81481 * 8 7 6 10 10 O 1.21588 * 120.00325 * 179.69856 * 9 8 7 11 11 N 1.34779 * 120.00239 * 359.69699 * 9 8 7 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46953 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48508 * 109.47394 * 329.99535 * 19 17 15 23 23 C 1.47025 * 108.70211 * 335.55604 * 8 7 6 24 24 H 1.09000 * 109.47396 * 181.68989 * 1 2 3 25 25 H 1.08998 * 109.46970 * 301.68701 * 1 2 3 26 26 H 1.09004 * 109.47180 * 61.69087 * 1 2 3 27 27 H 0.96704 * 116.99580 * 179.97438 * 5 3 2 28 28 H 1.09006 * 111.00115 * 201.00440 * 6 2 1 29 29 H 1.08998 * 111.00188 * 324.81567 * 6 2 1 30 30 H 1.08998 * 110.49641 * 278.45535 * 7 6 2 31 31 H 1.08998 * 110.34587 * 156.05599 * 7 6 2 32 32 H 0.96999 * 119.99538 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47565 * 60.00082 * 12 11 9 34 34 H 1.09001 * 109.47062 * 299.99546 * 12 11 9 35 35 H 1.09001 * 109.47502 * 60.00124 * 13 12 11 36 36 H 1.09001 * 109.47289 * 299.99920 * 13 12 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.88209 * 120.69882 * 23 8 7 41 41 H 1.08995 * 109.87865 * 241.70843 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7387 1.8006 0.9212 5 8 1.7820 2.2326 -1.0235 6 6 2.0828 -0.7949 1.2125 7 6 2.0139 -2.2518 0.6841 8 7 2.3755 -2.1507 -0.7416 9 6 2.8901 -3.1437 -1.4937 10 8 3.1465 -2.9480 -2.6661 11 7 3.1204 -4.3536 -0.9465 12 6 3.6803 -5.4327 -1.7639 13 6 3.8410 -6.6903 -0.9075 14 6 4.4251 -7.8176 -1.7614 15 6 4.5828 -9.0565 -0.9180 16 1 4.2956 -9.0413 0.1230 17 6 5.0948 -10.2091 -1.4751 18 7 5.4451 -10.2276 -2.7426 19 14 5.2910 -11.7446 -0.4296 20 1 4.0495 -12.5561 -0.5040 21 1 6.4360 -12.5442 -0.9343 22 1 5.5434 -11.3542 0.9809 23 6 2.0759 -0.7892 -1.2086 24 1 -0.3634 -1.0272 0.0303 25 1 -0.3633 0.5398 0.8745 26 1 -0.3634 0.4874 -0.9048 27 1 2.1446 3.1280 -0.9787 28 1 3.1096 -0.5044 1.4347 29 1 1.4448 -0.6671 2.0870 30 1 1.0050 -2.6497 0.7922 31 1 2.7296 -2.8810 1.2132 32 1 2.9162 -4.5096 -0.0111 33 1 4.6533 -5.1288 -2.1499 34 1 3.0089 -5.6438 -2.5962 35 1 2.8678 -6.9942 -0.5218 36 1 4.5121 -6.4796 -0.0749 37 1 3.7536 -8.0283 -2.5937 38 1 5.3982 -7.5141 -2.1474 39 1 5.8056 -11.0383 -3.1345 40 1 2.9851 -0.3162 -1.5800 41 1 1.3271 -0.8251 -1.9998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827995589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = -133.353444 kcal Electronic energy + Delta-G solvation = -22152.139746 eV Core-core repulsion = 18645.545324 eV Total energy + Delta-G solvation = -3506.594422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31816 -39.96123 -37.99102 -36.54345 -35.36728 -33.59701 -32.99982 -31.03922 -29.98971 -27.57947 -26.42689 -24.68776 -23.46396 -22.74092 -20.63058 -20.20938 -19.77253 -18.31341 -18.14818 -16.97826 -16.54602 -16.20472 -15.83343 -15.73885 -14.93818 -14.52596 -14.41114 -14.25104 -13.85448 -13.68039 -13.20120 -13.17494 -12.82484 -12.46608 -12.29126 -12.13824 -11.95309 -11.79464 -11.68737 -11.55802 -11.32972 -10.90615 -10.88309 -10.71960 -10.59200 -10.13376 -9.86139 -9.44865 -9.12477 -9.01369 -8.54171 -8.36960 -6.01531 -4.04676 1.69368 2.35567 2.70826 3.29143 3.30863 3.37299 3.39977 3.68388 3.95161 4.15164 4.28316 4.44699 4.62405 4.73172 4.84560 5.08614 5.19768 5.24988 5.33228 5.34246 5.39059 5.48477 5.56388 5.67766 5.72453 5.81138 5.98542 6.03701 6.18199 6.51235 6.61993 6.80881 7.00939 7.04191 7.42088 7.64113 7.76945 7.97337 8.02782 8.38144 8.68350 9.02034 9.59469 11.09797 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042111 B = 0.002521 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.751903 B =11103.485824 C =11399.922683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C 0.497 3.503 4 O -0.508 6.508 5 O -0.510 6.510 6 C -0.111 4.111 7 C 0.098 3.902 8 N -0.641 5.641 9 C 0.720 3.280 10 O -0.587 6.587 11 N -0.738 5.738 12 C 0.134 3.866 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.147 3.853 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.412 0.588 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 23.879 8.092 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C 0.338 3.662 4 O -0.395 6.395 5 O -0.322 6.322 6 C -0.149 4.149 7 C -0.025 4.025 8 N -0.382 5.382 9 C 0.422 3.578 10 O -0.465 6.465 11 N -0.392 5.392 12 C 0.011 3.989 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.023 3.977 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.830 23.512 7.231 26.877 hybrid contribution 0.321 -0.327 1.036 1.133 sum -10.509 23.185 8.268 26.764 Atomic orbital electron populations 1.21845 0.90079 1.04015 1.03449 1.21557 0.98568 0.88070 0.98836 1.22966 0.76581 0.87705 0.78924 1.90740 1.36120 1.76560 1.36124 1.84546 1.72531 1.28412 1.46698 1.22889 1.03543 0.92734 0.95764 1.22390 1.01198 0.97219 0.81666 1.47491 1.68569 1.11215 1.10912 1.15467 0.78254 0.79897 0.84201 1.90937 1.58824 1.81918 1.14771 1.45399 1.68822 1.10469 1.14515 1.21548 0.98197 0.85231 0.93896 1.21891 1.00893 0.94032 0.98977 1.19028 0.96219 0.91220 0.94905 1.21200 1.42268 0.95925 0.96652 0.92657 1.25030 0.95507 0.98960 0.94987 1.69962 1.43247 1.28223 1.11838 0.86582 0.77695 0.83116 0.80511 1.20663 1.21214 1.19909 1.21583 1.00893 0.81115 0.94155 0.90331 0.91486 0.90650 0.72885 0.88915 0.88681 0.90771 0.89983 0.77251 0.91872 0.91827 0.92750 0.92769 0.96220 0.96218 0.92916 0.91198 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.41 37.16 0.31 -0.42 16 2 C -0.07 -0.51 0.86 -153.83 -0.13 -0.64 16 3 C 0.50 4.13 6.83 36.00 0.25 4.38 16 4 O -0.51 -5.62 16.52 -18.75 -0.31 -5.93 16 5 O -0.51 -3.12 13.38 -39.27 -0.53 -3.65 16 6 C -0.11 -0.78 5.65 -24.46 -0.14 -0.92 16 7 C 0.10 0.76 6.27 -2.41 -0.02 0.74 16 8 N -0.64 -7.44 3.32 -176.10 -0.59 -8.02 16 9 C 0.72 11.41 8.49 -86.92 -0.74 10.67 16 10 O -0.59 -11.81 16.67 5.29 0.09 -11.72 16 11 N -0.74 -10.95 5.52 -65.23 -0.36 -11.31 16 12 C 0.13 2.40 5.67 -4.05 -0.02 2.38 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.15 1.47 6.02 -3.06 -0.02 1.46 16 24 H 0.08 0.40 7.44 -51.93 -0.39 0.01 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.41 0.84 9.10 45.56 0.41 1.26 16 28 H 0.09 0.78 7.49 -51.93 -0.39 0.40 16 29 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.07 0.46 7.71 -51.93 -0.40 0.06 16 31 H 0.08 0.58 7.29 -51.93 -0.38 0.20 16 32 H 0.39 4.71 6.95 -40.82 -0.28 4.42 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.07 0.79 7.81 -51.93 -0.41 0.38 16 41 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -35.79 343.44 -7.58 -43.37 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.58 Total: -0.53 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.20 Total: 2.30 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.21 Total: -45.44 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.75 Total: -21.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.79 -7.58 -43.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827995589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.985 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds