Wall clock time and date at job start Tue Mar 31 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.64327 * 2 1 4 4 O 1.20827 * 120.00006 * 118.31212 * 3 2 1 5 5 O 1.34233 * 119.99962 * 298.31039 * 3 2 1 6 6 C 1.55162 * 110.87065 * 123.24924 * 2 1 3 7 7 C 1.55126 * 101.48702 * 82.76526 * 6 2 1 8 8 N 1.47426 * 104.72391 * 37.29271 * 7 6 2 9 9 C 1.34774 * 125.64878 * 155.81481 * 8 7 6 10 10 O 1.21588 * 120.00325 * 179.69856 * 9 8 7 11 11 N 1.34779 * 120.00239 * 359.69699 * 9 8 7 12 12 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46953 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48508 * 109.47394 * 329.99535 * 19 17 15 23 23 C 1.47025 * 108.70211 * 335.55604 * 8 7 6 24 24 H 1.09000 * 109.47396 * 181.68989 * 1 2 3 25 25 H 1.08998 * 109.46970 * 301.68701 * 1 2 3 26 26 H 1.09004 * 109.47180 * 61.69087 * 1 2 3 27 27 H 0.96704 * 116.99580 * 179.97438 * 5 3 2 28 28 H 1.09006 * 111.00115 * 201.00440 * 6 2 1 29 29 H 1.08998 * 111.00188 * 324.81567 * 6 2 1 30 30 H 1.08998 * 110.49641 * 278.45535 * 7 6 2 31 31 H 1.08998 * 110.34587 * 156.05599 * 7 6 2 32 32 H 0.96999 * 119.99538 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47565 * 60.00082 * 12 11 9 34 34 H 1.09001 * 109.47062 * 299.99546 * 12 11 9 35 35 H 1.09001 * 109.47502 * 60.00124 * 13 12 11 36 36 H 1.09001 * 109.47289 * 299.99920 * 13 12 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 38 38 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 39 39 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.88209 * 120.69882 * 23 8 7 41 41 H 1.08995 * 109.87865 * 241.70843 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7387 1.8006 0.9212 5 8 1.7820 2.2326 -1.0235 6 6 2.0828 -0.7949 1.2125 7 6 2.0139 -2.2518 0.6841 8 7 2.3755 -2.1507 -0.7416 9 6 2.8901 -3.1437 -1.4937 10 8 3.1465 -2.9480 -2.6661 11 7 3.1204 -4.3536 -0.9465 12 6 3.6803 -5.4327 -1.7639 13 6 3.8410 -6.6903 -0.9075 14 6 4.4251 -7.8176 -1.7614 15 6 4.5828 -9.0565 -0.9180 16 1 4.2956 -9.0413 0.1230 17 6 5.0948 -10.2091 -1.4751 18 7 5.4451 -10.2276 -2.7426 19 14 5.2910 -11.7446 -0.4296 20 1 4.0495 -12.5561 -0.5040 21 1 6.4360 -12.5442 -0.9343 22 1 5.5434 -11.3542 0.9809 23 6 2.0759 -0.7892 -1.2086 24 1 -0.3634 -1.0272 0.0303 25 1 -0.3633 0.5398 0.8745 26 1 -0.3634 0.4874 -0.9048 27 1 2.1446 3.1280 -0.9787 28 1 3.1096 -0.5044 1.4347 29 1 1.4448 -0.6671 2.0870 30 1 1.0050 -2.6497 0.7922 31 1 2.7296 -2.8810 1.2132 32 1 2.9162 -4.5096 -0.0111 33 1 4.6533 -5.1288 -2.1499 34 1 3.0089 -5.6438 -2.5962 35 1 2.8678 -6.9942 -0.5218 36 1 4.5121 -6.4796 -0.0749 37 1 3.7536 -8.0283 -2.5937 38 1 5.3982 -7.5141 -2.1474 39 1 5.8056 -11.0383 -3.1345 40 1 2.9851 -0.3162 -1.5800 41 1 1.3271 -0.8251 -1.9998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827995589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:54 Heat of formation + Delta-G solvation = -159.311202 kcal Electronic energy + Delta-G solvation = -22153.265359 eV Core-core repulsion = 18645.545324 eV Total energy + Delta-G solvation = -3507.720035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04862 -40.97248 -38.89934 -37.18014 -36.92754 -35.23590 -34.19251 -32.73347 -30.67064 -28.88469 -27.56491 -25.72713 -24.52557 -24.01730 -22.28434 -21.01252 -20.80271 -19.20293 -18.93109 -18.47102 -17.73818 -17.20674 -16.97772 -16.73251 -16.44997 -16.05864 -15.46903 -15.36997 -14.77313 -14.53134 -14.26211 -14.13774 -13.81596 -13.70431 -13.51240 -13.34542 -13.03708 -12.77523 -12.73133 -12.56460 -12.52128 -12.35575 -12.15025 -11.89036 -11.66279 -11.65458 -11.54561 -11.30611 -11.14399 -10.54045 -10.28733 -9.58945 -8.18115 -6.29559 1.02318 1.42586 1.44337 1.46555 1.55343 1.99304 2.09390 2.43065 2.95315 3.13771 3.15789 3.37937 3.73172 4.02359 4.16369 4.20623 4.23406 4.24641 4.52031 4.56646 4.56950 4.67177 4.78413 4.86233 4.91042 4.96682 4.98331 5.04335 5.15829 5.19967 5.28617 5.45241 5.52806 5.54654 5.72633 5.85740 5.93945 6.23813 6.86982 6.90158 6.92457 7.40000 7.47774 8.94132 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042111 B = 0.002521 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.751903 B =11103.485824 C =11399.922683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 C 0.501 3.499 4 O -0.539 6.539 5 O -0.507 6.507 6 C -0.106 4.106 7 C 0.093 3.907 8 N -0.637 5.637 9 C 0.715 3.285 10 O -0.638 6.638 11 N -0.726 5.726 12 C 0.149 3.851 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.260 1.260 23 C 0.143 3.857 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.429 0.571 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.411 0.589 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.067 0.933 37 H -0.007 1.007 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 24.153 10.700 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 C 0.343 3.657 4 O -0.429 6.429 5 O -0.321 6.321 6 C -0.144 4.144 7 C -0.028 4.028 8 N -0.375 5.375 9 C 0.417 3.583 10 O -0.519 6.519 11 N -0.381 5.381 12 C 0.025 3.975 13 C -0.137 4.137 14 C -0.014 4.014 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.184 1.184 23 C 0.019 3.981 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.292 0.708 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.366 23.836 9.901 28.620 hybrid contribution 0.779 -0.304 0.176 0.855 sum -11.587 23.532 10.077 28.099 Atomic orbital electron populations 1.21862 0.88035 1.04815 1.04269 1.21559 0.99994 0.87202 0.97547 1.23096 0.75795 0.88131 0.78652 1.90734 1.37484 1.77283 1.37374 1.84515 1.72265 1.29587 1.45731 1.22891 1.03219 0.91830 0.96419 1.22729 1.02865 0.98195 0.79060 1.47464 1.66997 1.10674 1.12381 1.15602 0.78279 0.80562 0.83861 1.90900 1.60946 1.82870 1.17228 1.45021 1.68533 1.09605 1.14985 1.21114 0.97219 0.85599 0.93605 1.21584 1.01472 0.92451 0.98207 1.18944 0.94568 0.93050 0.94882 1.21682 1.41850 0.96782 0.97428 0.91418 1.26032 0.95137 1.02786 0.96238 1.70112 1.44339 1.29299 1.13894 0.85410 0.77739 0.78552 0.79104 1.19775 1.21171 1.18372 1.21670 1.00220 0.80619 0.95615 0.89559 0.89973 0.90539 0.70840 0.90572 0.85974 0.88162 0.89000 0.75200 0.93611 0.93282 0.91129 0.91386 0.98876 0.99015 0.92836 0.93046 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.41 71.98 0.61 -0.44 16 2 C -0.06 -0.79 0.86 -51.74 -0.04 -0.84 16 3 C 0.50 7.67 6.83 71.23 0.49 8.16 16 4 O -0.54 -11.39 16.52 21.96 0.36 -11.03 16 5 O -0.51 -5.52 13.38 -51.45 -0.69 -6.21 16 6 C -0.11 -1.21 5.65 32.06 0.18 -1.03 16 7 C 0.09 1.18 6.27 86.93 0.55 1.72 16 8 N -0.64 -14.02 3.32 -829.31 -2.76 -16.77 16 9 C 0.72 22.46 8.49 179.05 1.52 23.98 16 10 O -0.64 -26.36 16.67 -3.99 -0.07 -26.43 16 11 N -0.73 -20.81 5.52 -478.55 -2.64 -23.45 16 12 C 0.15 5.38 5.67 86.38 0.49 5.87 16 13 C -0.10 -3.79 5.27 30.60 0.16 -3.63 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 19 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 C 0.14 2.77 6.02 86.73 0.52 3.29 16 24 H 0.09 0.58 7.44 -2.39 -0.02 0.56 16 25 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.43 1.17 9.10 -74.05 -0.67 0.50 16 28 H 0.08 1.17 7.49 -2.38 -0.02 1.16 16 29 H 0.12 0.79 8.04 -2.39 -0.02 0.77 16 30 H 0.10 0.84 7.71 -2.39 -0.02 0.82 16 31 H 0.09 1.02 7.29 -2.39 -0.02 1.00 16 32 H 0.41 8.83 6.95 -92.71 -0.64 8.19 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.05 1.18 7.81 -2.38 -0.02 1.17 16 41 H 0.08 1.60 7.85 -2.39 -0.02 1.58 16 Total: -1.00 -79.17 343.44 1.56 -77.62 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.27 Total: 8.70 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.31 Total: 8.95 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -5.11 Total: -97.26 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.39 Total: -43.67 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -79.17 1.56 -77.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827995589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.695 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds