Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 110.28341 * 2 1 4 4 O 1.20829 * 119.99827 * 240.67719 * 3 2 1 5 5 O 1.34227 * 120.00235 * 60.68342 * 3 2 1 6 6 C 1.54615 * 110.41617 * 237.80866 * 2 1 3 7 7 C 1.54599 * 102.90967 * 262.75416 * 6 2 1 8 8 N 1.48115 * 103.42601 * 322.87453 * 7 6 2 9 9 C 1.34777 * 127.03035 * 219.28620 * 8 7 6 10 10 O 1.21593 * 119.99923 * 179.67909 * 9 8 7 11 11 N 1.34777 * 120.00128 * 359.68039 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27942 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47037 * 60.00067 * 19 17 15 21 21 H 1.48495 * 109.46817 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46854 * 299.99817 * 19 17 15 23 23 C 1.47489 * 105.93354 * 39.01867 * 8 7 6 24 24 H 1.08989 * 109.47424 * 299.31923 * 1 2 3 25 25 H 1.09000 * 109.47311 * 59.32750 * 1 2 3 26 26 H 1.09006 * 109.46774 * 179.32080 * 1 2 3 27 27 H 0.96705 * 117.00039 * 179.97438 * 5 3 2 28 28 H 1.08999 * 110.74180 * 21.24388 * 6 2 1 29 29 H 1.09004 * 110.74101 * 144.57485 * 6 2 1 30 30 H 1.08994 * 110.62048 * 204.35275 * 7 6 2 31 31 H 1.09008 * 110.54012 * 81.34877 * 7 6 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 34 34 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 35 35 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 36 36 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 37 37 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 38 38 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 39 39 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.91162 * 94.14352 * 23 8 7 41 41 H 1.09005 * 109.90785 * 215.42084 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4136 0.0000 4 8 2.7426 1.8026 -0.9124 5 8 1.7513 2.2405 1.0135 6 6 2.0694 -0.7720 -1.2263 7 6 2.3680 -2.1742 -0.6477 8 7 2.8826 -1.8834 0.7104 9 6 3.8948 -2.5066 1.3455 10 8 4.2169 -2.1576 2.4648 11 7 4.5501 -3.5167 0.7399 12 6 5.6464 -4.1982 1.4327 13 6 6.2102 -5.3009 0.5344 14 6 7.3556 -6.0122 1.2576 15 6 7.9104 -7.0988 0.3730 16 1 7.4886 -7.2651 -0.6072 17 6 8.9572 -7.8799 0.8146 18 7 9.4712 -7.6771 2.0081 19 14 9.6455 -9.2263 -0.2823 20 1 10.1520 -8.6271 -1.5430 21 1 10.7579 -9.9159 0.4193 22 1 8.5741 -10.2059 -0.5951 23 6 2.0649 -0.7680 1.2230 24 1 -0.3634 0.5032 0.8959 25 1 -0.3634 0.5242 -0.8839 26 1 -0.3633 -1.0277 -0.0122 27 1 2.1096 3.1376 0.9696 28 1 1.3136 -0.8287 -2.0097 29 1 2.9825 -0.3103 -1.6020 30 1 3.1246 -2.6827 -1.2450 31 1 1.4555 -2.7681 -0.5942 32 1 4.2930 -3.7954 -0.1529 33 1 6.4330 -3.4796 1.6631 34 1 5.2740 -4.6382 2.3577 35 1 5.4236 -6.0195 0.3040 36 1 6.5827 -4.8610 -0.3908 37 1 8.1420 -5.2935 1.4876 38 1 6.9834 -6.4521 2.1829 39 1 10.2079 -8.2263 2.3186 40 1 1.2331 -1.1568 1.8102 41 1 2.6794 -0.1085 1.8360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827995590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = -131.753528 kcal Electronic energy + Delta-G solvation = -22228.752337 eV Core-core repulsion = 18722.227293 eV Total energy + Delta-G solvation = -3506.525044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30300 -39.87937 -37.95438 -36.49027 -35.36041 -33.61908 -33.02986 -31.04812 -29.99906 -27.48248 -26.30705 -24.75880 -23.46862 -22.77292 -20.63441 -20.13477 -19.77156 -18.23756 -18.13635 -16.90398 -16.58221 -16.26988 -15.81095 -15.73813 -14.90027 -14.51238 -14.30007 -14.25971 -13.91801 -13.46104 -13.40270 -13.00539 -12.79322 -12.49096 -12.27397 -12.09785 -11.91983 -11.78880 -11.69624 -11.53224 -11.23578 -10.88269 -10.82917 -10.71002 -10.61625 -10.13287 -9.85308 -9.44195 -9.13181 -9.04828 -8.55881 -8.36162 -6.00860 -4.04130 1.77371 2.42855 2.65221 3.28743 3.32532 3.37318 3.39134 3.77205 3.96181 4.17905 4.33225 4.45135 4.68822 4.75325 4.89163 5.07562 5.16694 5.23552 5.34435 5.34743 5.39316 5.48528 5.59316 5.66966 5.73543 5.81615 5.97411 6.10186 6.18640 6.51730 6.62488 6.81708 7.01594 7.06114 7.47869 7.64402 7.77503 7.97863 8.03660 8.38654 8.68868 9.02354 9.59922 11.10414 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036698 B = 0.002605 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.810804 B =10744.311543 C =10940.011534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.493 3.507 4 O -0.508 6.508 5 O -0.511 6.511 6 C -0.121 4.121 7 C 0.101 3.899 8 N -0.645 5.645 9 C 0.723 3.277 10 O -0.587 6.587 11 N -0.738 5.738 12 C 0.134 3.866 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.141 3.859 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.412 0.588 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.316 17.121 -6.088 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C 0.334 3.666 4 O -0.396 6.396 5 O -0.323 6.323 6 C -0.159 4.159 7 C -0.023 4.023 8 N -0.385 5.385 9 C 0.425 3.575 10 O -0.465 6.465 11 N -0.392 5.392 12 C 0.011 3.989 13 C -0.158 4.158 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.017 3.983 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.772 16.941 -5.275 27.318 hybrid contribution 0.584 -0.235 -1.071 1.242 sum -20.188 16.706 -6.345 26.961 Atomic orbital electron populations 1.21884 0.90117 1.03893 1.03470 1.21447 0.98438 0.88245 0.98906 1.23098 0.76752 0.87983 0.78733 1.90730 1.35697 1.76743 1.36396 1.84520 1.72157 1.28096 1.47554 1.22826 1.03400 0.94378 0.95298 1.22459 0.99810 0.96698 0.83312 1.47840 1.35425 1.37334 1.17913 1.15429 0.78339 0.79912 0.83800 1.90936 1.68771 1.68263 1.18542 1.45394 1.37533 1.35980 1.20295 1.21551 0.86912 0.94441 0.95959 1.21893 0.99929 0.95514 0.98465 1.19021 0.91716 0.94875 0.95709 1.21166 1.16641 1.16503 1.01831 0.92701 1.25029 0.96728 0.97564 0.95122 1.69955 1.25444 1.40043 1.17842 0.86641 0.78603 0.82018 0.80618 1.20257 1.21272 1.20243 1.21759 0.95079 0.87974 0.93518 0.90701 0.91490 0.90341 0.72891 0.88805 0.88686 0.89693 0.90437 0.77255 0.91878 0.91819 0.92743 0.92765 0.96229 0.96220 0.92857 0.90026 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.17 37.16 0.30 -0.34 16 2 C -0.07 -0.52 0.91 -154.29 -0.14 -0.66 16 3 C 0.49 4.51 6.75 36.01 0.24 4.76 16 4 O -0.51 -6.20 16.20 -18.75 -0.30 -6.51 16 5 O -0.51 -3.50 13.30 -39.25 -0.52 -4.02 16 6 C -0.12 -0.88 5.94 -25.04 -0.15 -1.03 16 7 C 0.10 0.78 6.92 -2.31 -0.02 0.77 16 8 N -0.65 -7.64 3.29 -175.69 -0.58 -8.22 16 9 C 0.72 11.71 8.54 -86.92 -0.74 10.96 16 10 O -0.59 -12.00 16.68 5.28 0.09 -11.92 16 11 N -0.74 -11.19 5.53 -65.23 -0.36 -11.55 16 12 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 13 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.14 1.40 6.26 -2.98 -0.02 1.38 16 24 H 0.07 0.34 8.14 -51.94 -0.42 -0.09 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.41 1.22 9.10 45.56 0.41 1.63 16 28 H 0.09 0.46 7.86 -51.93 -0.41 0.05 16 29 H 0.09 0.90 6.92 -51.93 -0.36 0.54 16 30 H 0.08 0.61 6.83 -51.93 -0.35 0.25 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.39 4.82 6.81 -40.82 -0.28 4.54 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 41 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -36.31 343.33 -7.56 -43.88 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.54 Total: 0.05 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.23 Total: 2.81 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.20 Total: -45.98 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.74 Total: -22.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.31 -7.56 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827995590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.875 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds