Wall clock time and date at job start Tue Mar 31 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 110.28341 * 2 1 4 4 O 1.20829 * 119.99827 * 240.67719 * 3 2 1 5 5 O 1.34227 * 120.00235 * 60.68342 * 3 2 1 6 6 C 1.54615 * 110.41617 * 237.80866 * 2 1 3 7 7 C 1.54599 * 102.90967 * 262.75416 * 6 2 1 8 8 N 1.48115 * 103.42601 * 322.87453 * 7 6 2 9 9 C 1.34777 * 127.03035 * 219.28620 * 8 7 6 10 10 O 1.21593 * 119.99923 * 179.67909 * 9 8 7 11 11 N 1.34777 * 120.00128 * 359.68039 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27942 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47037 * 60.00067 * 19 17 15 21 21 H 1.48495 * 109.46817 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46854 * 299.99817 * 19 17 15 23 23 C 1.47489 * 105.93354 * 39.01867 * 8 7 6 24 24 H 1.08989 * 109.47424 * 299.31923 * 1 2 3 25 25 H 1.09000 * 109.47311 * 59.32750 * 1 2 3 26 26 H 1.09006 * 109.46774 * 179.32080 * 1 2 3 27 27 H 0.96705 * 117.00039 * 179.97438 * 5 3 2 28 28 H 1.08999 * 110.74180 * 21.24388 * 6 2 1 29 29 H 1.09004 * 110.74101 * 144.57485 * 6 2 1 30 30 H 1.08994 * 110.62048 * 204.35275 * 7 6 2 31 31 H 1.09008 * 110.54012 * 81.34877 * 7 6 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 34 34 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 35 35 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 36 36 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 37 37 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 38 38 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 39 39 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.91162 * 94.14352 * 23 8 7 41 41 H 1.09005 * 109.90785 * 215.42084 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4136 0.0000 4 8 2.7426 1.8026 -0.9124 5 8 1.7513 2.2405 1.0135 6 6 2.0694 -0.7720 -1.2263 7 6 2.3680 -2.1742 -0.6477 8 7 2.8826 -1.8834 0.7104 9 6 3.8948 -2.5066 1.3455 10 8 4.2169 -2.1576 2.4648 11 7 4.5501 -3.5167 0.7399 12 6 5.6464 -4.1982 1.4327 13 6 6.2102 -5.3009 0.5344 14 6 7.3556 -6.0122 1.2576 15 6 7.9104 -7.0988 0.3730 16 1 7.4886 -7.2651 -0.6072 17 6 8.9572 -7.8799 0.8146 18 7 9.4712 -7.6771 2.0081 19 14 9.6455 -9.2263 -0.2823 20 1 10.1520 -8.6271 -1.5430 21 1 10.7579 -9.9159 0.4193 22 1 8.5741 -10.2059 -0.5951 23 6 2.0649 -0.7680 1.2230 24 1 -0.3634 0.5032 0.8959 25 1 -0.3634 0.5242 -0.8839 26 1 -0.3633 -1.0277 -0.0122 27 1 2.1096 3.1376 0.9696 28 1 1.3136 -0.8287 -2.0097 29 1 2.9825 -0.3103 -1.6020 30 1 3.1246 -2.6827 -1.2450 31 1 1.4555 -2.7681 -0.5942 32 1 4.2930 -3.7954 -0.1529 33 1 6.4330 -3.4796 1.6631 34 1 5.2740 -4.6382 2.3577 35 1 5.4236 -6.0195 0.3040 36 1 6.5827 -4.8610 -0.3908 37 1 8.1420 -5.2935 1.4876 38 1 6.9834 -6.4521 2.1829 39 1 10.2079 -8.2263 2.3186 40 1 1.2331 -1.1568 1.8102 41 1 2.6794 -0.1085 1.8360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827995590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:57 Heat of formation + Delta-G solvation = -158.337763 kcal Electronic energy + Delta-G solvation = -22229.905116 eV Core-core repulsion = 18722.227293 eV Total energy + Delta-G solvation = -3507.677823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05955 -40.93794 -38.86557 -37.19789 -36.93915 -35.24324 -34.22683 -32.76229 -30.68080 -28.88210 -27.36230 -25.77615 -24.54358 -24.07880 -22.30361 -21.05515 -20.73259 -19.19827 -18.93104 -18.47690 -17.63328 -17.33181 -17.07651 -16.70780 -16.46776 -16.04290 -15.46763 -15.32662 -14.83118 -14.48695 -14.25438 -13.99634 -13.78480 -13.64407 -13.47523 -13.37329 -13.06294 -12.75037 -12.70635 -12.56650 -12.53825 -12.39481 -12.14285 -11.80895 -11.67160 -11.63462 -11.53772 -11.32420 -11.16405 -10.54036 -10.32157 -9.62752 -8.18528 -6.30272 1.05451 1.41943 1.45591 1.45964 1.53546 1.96988 2.08323 2.42642 2.94848 3.15155 3.20232 3.43137 3.79634 4.09114 4.15124 4.21418 4.22262 4.29768 4.48520 4.55184 4.59179 4.69865 4.80496 4.89973 4.92979 4.95056 4.98515 5.08556 5.15837 5.18741 5.33542 5.43794 5.53314 5.53420 5.71349 5.84726 5.95100 6.22966 6.86032 6.88720 6.91422 7.39280 7.46833 8.93518 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036698 B = 0.002605 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.810804 B =10744.311543 C =10940.011534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C 0.492 3.508 4 O -0.545 6.545 5 O -0.508 6.508 6 C -0.116 4.116 7 C 0.096 3.904 8 N -0.644 5.644 9 C 0.717 3.283 10 O -0.639 6.639 11 N -0.726 5.726 12 C 0.149 3.851 13 C -0.099 4.099 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.136 3.864 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.428 0.572 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.410 0.590 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.067 0.933 37 H -0.009 1.009 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.100 0.900 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.528 16.576 -8.422 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C 0.335 3.665 4 O -0.435 6.435 5 O -0.321 6.321 6 C -0.154 4.154 7 C -0.025 4.025 8 N -0.382 5.382 9 C 0.419 3.581 10 O -0.521 6.521 11 N -0.382 5.382 12 C 0.025 3.975 13 C -0.137 4.137 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.189 1.189 23 C 0.013 3.987 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.289 0.711 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.009 0.991 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.049 16.427 -7.662 29.323 hybrid contribution 1.232 0.039 -0.298 1.268 sum -21.818 16.466 -7.961 28.469 Atomic orbital electron populations 1.21916 0.87344 1.05369 1.04192 1.21506 1.00388 0.86792 0.97728 1.23487 0.75905 0.88780 0.78338 1.90719 1.37331 1.77629 1.37853 1.84494 1.71843 1.29178 1.46613 1.22829 1.03250 0.93522 0.95824 1.22822 1.01202 0.97587 0.80913 1.47851 1.34047 1.36912 1.19375 1.15583 0.79061 0.80046 0.83415 1.90896 1.70489 1.69736 1.20986 1.45023 1.36669 1.35735 1.20800 1.21116 0.87320 0.93678 0.95420 1.21585 0.98239 0.95714 0.98173 1.18934 0.92926 0.94347 0.95164 1.21656 1.16830 1.16909 1.02549 0.91407 1.26038 0.97202 1.00330 0.96573 1.70109 1.26133 1.41435 1.19952 0.85460 0.77941 0.78760 0.78635 1.19058 1.21237 1.18874 1.21934 0.94808 0.87357 0.94632 0.90449 0.90358 0.88470 0.71056 0.85604 0.91242 0.88956 0.87210 0.75237 0.93733 0.93227 0.91078 0.91453 0.99080 0.98849 0.92810 0.88198 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 8.17 71.98 0.59 -0.20 16 2 C -0.06 -0.81 0.91 -52.04 -0.05 -0.86 16 3 C 0.49 8.59 6.75 71.24 0.48 9.07 16 4 O -0.55 -13.20 16.20 21.96 0.36 -12.84 16 5 O -0.51 -6.50 13.30 -51.39 -0.68 -7.19 16 6 C -0.12 -1.39 5.94 31.69 0.19 -1.20 16 7 C 0.10 1.21 6.92 86.61 0.60 1.81 16 8 N -0.64 -14.43 3.29 -828.02 -2.73 -17.15 16 9 C 0.72 23.13 8.54 179.05 1.53 24.66 16 10 O -0.64 -26.96 16.68 -4.01 -0.07 -27.03 16 11 N -0.73 -21.49 5.53 -478.54 -2.64 -24.13 16 12 C 0.15 5.50 5.67 86.38 0.49 5.99 16 13 C -0.10 -3.86 5.27 30.59 0.16 -3.69 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 19 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.14 2.55 6.26 86.53 0.54 3.09 16 24 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.43 2.22 9.10 -74.05 -0.67 1.55 16 28 H 0.13 0.73 7.86 -2.39 -0.02 0.71 16 29 H 0.07 1.24 6.92 -2.38 -0.02 1.22 16 30 H 0.09 1.04 6.83 -2.39 -0.02 1.03 16 31 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.41 9.19 6.81 -92.71 -0.63 8.56 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.10 1.51 7.68 -2.39 -0.02 1.49 16 41 H 0.06 1.36 7.54 -2.38 -0.02 1.34 16 Total: -1.00 -81.37 343.33 1.66 -79.71 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -0.26 Total: 9.83 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.38 Total: 10.26 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.09 Total: -98.60 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.39 Total: -47.05 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -81.37 1.66 -79.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827995590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.624 kcal (2) G-P(sol) polarization free energy of solvation -81.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds