Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.37241 * 2 1 4 4 C 1.54385 * 110.51069 * 237.58487 * 2 1 3 5 5 C 1.54262 * 105.05873 * 217.31601 * 4 2 1 6 6 C 1.54378 * 105.06291 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.40910 * 265.06909 * 6 5 4 8 8 C 1.52998 * 110.41289 * 142.62989 * 6 5 4 9 9 N 1.48559 * 104.59432 * 23.85036 * 6 5 4 10 10 C 1.46896 * 110.99906 * 200.96383 * 9 6 5 11 11 C 1.50698 * 109.47537 * 55.28544 * 10 9 6 12 12 O 1.21299 * 119.99907 * 5.92887 * 11 10 9 13 13 N 1.34773 * 120.00308 * 185.93440 * 11 10 9 14 14 C 1.37094 * 120.00199 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00461 * 323.12726 * 14 13 11 16 16 C 1.38954 * 120.00323 * 143.12523 * 14 13 11 17 17 N 1.31410 * 120.00274 * 155.88653 * 16 14 13 18 18 Si 1.86800 * 119.99684 * 335.88521 * 16 14 13 19 19 H 1.48505 * 109.46944 * 92.91877 * 18 16 14 20 20 H 1.48498 * 109.47114 * 212.91660 * 18 16 14 21 21 H 1.48499 * 109.47360 * 332.92209 * 18 16 14 22 22 C 1.46500 * 119.99779 * 359.97438 * 13 11 10 23 23 C 1.50698 * 109.47308 * 83.27222 * 22 13 11 24 24 O 1.20832 * 119.99925 * 359.97438 * 23 22 13 25 25 O 1.34231 * 120.00257 * 180.02562 * 23 22 13 26 26 H 1.09000 * 109.46873 * 297.64700 * 1 2 3 27 27 H 1.09005 * 109.46980 * 57.64240 * 1 2 3 28 28 H 1.08998 * 109.47048 * 177.64632 * 1 2 3 29 29 H 1.08993 * 110.32512 * 336.21859 * 4 2 1 30 30 H 1.09003 * 110.32101 * 98.42548 * 4 2 1 31 31 H 1.08998 * 110.32062 * 118.89724 * 5 4 2 32 32 H 1.09002 * 110.32284 * 240.99867 * 5 4 2 33 33 H 1.09002 * 109.46606 * 308.63932 * 8 6 5 34 34 H 1.08998 * 109.46904 * 68.63540 * 8 6 5 35 35 H 1.08996 * 109.47116 * 188.63898 * 8 6 5 36 36 H 1.09004 * 109.46958 * 295.28289 * 10 9 6 37 37 H 1.09000 * 109.47340 * 175.28941 * 10 9 6 38 38 H 0.96997 * 119.99911 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47567 * 323.26525 * 22 13 11 40 40 H 1.09008 * 109.47271 * 203.27011 * 22 13 11 41 41 H 0.96700 * 117.00117 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7751 -1.2207 5 6 3.3209 -1.5162 -0.7031 6 6 3.4298 -1.1270 0.7869 7 1 4.1064 -0.2814 0.9105 8 6 3.9080 -2.3203 1.6165 9 7 2.0477 -0.7459 1.1762 10 6 2.0535 0.1018 2.3758 11 6 2.9359 1.3004 2.1398 12 8 3.4179 1.4922 1.0434 13 7 3.1897 2.1592 3.1470 14 6 3.9929 3.2492 2.9325 15 1 4.8495 3.1688 2.2795 16 6 3.7051 4.4577 3.5550 17 7 4.6603 5.3378 3.7549 18 14 1.9603 4.8313 4.1076 19 1 1.7901 4.4169 5.5235 20 1 1.7032 6.2886 3.9841 21 1 1.0004 4.0852 3.2548 22 6 2.6073 1.9277 4.4712 23 6 3.4639 0.9493 5.2328 24 8 4.4586 0.4918 4.7217 25 8 3.1213 0.5852 6.4785 26 1 -0.3633 0.4769 0.9103 27 1 -0.3633 0.5500 -0.8681 28 1 -0.3633 -1.0268 -0.0422 29 1 1.3276 -1.4888 -1.5757 30 1 2.3438 -0.0834 -2.0177 31 1 3.1911 -2.5937 -0.8040 32 1 4.2071 -1.1896 -1.2474 33 1 3.2861 -3.1881 1.3967 34 1 4.9451 -2.5440 1.3669 35 1 3.8333 -2.0789 2.6768 36 1 2.4350 -0.4692 3.2224 37 1 1.0380 0.4348 2.5904 38 1 4.4593 6.1812 4.1898 39 1 1.6022 1.5210 4.3601 40 1 2.5595 2.8702 5.0169 41 1 3.7015 -0.0451 6.9269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828214900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -95.282155 kcal Electronic energy + Delta-G solvation = -24573.590433 eV Core-core repulsion = 21068.646906 eV Total energy + Delta-G solvation = -3504.943527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35383 -39.53203 -37.65551 -35.75530 -34.83976 -32.42026 -32.26045 -31.75575 -28.18993 -28.07688 -26.63623 -24.03346 -23.50576 -21.79749 -20.28714 -19.93780 -18.66231 -17.80644 -17.39140 -16.71489 -16.12903 -15.50810 -15.44254 -14.98614 -14.73331 -14.45403 -14.37730 -13.57581 -13.14383 -12.91119 -12.80430 -12.68643 -12.46579 -12.41312 -12.05555 -11.75183 -11.57542 -11.36448 -11.18128 -11.05829 -10.93289 -10.71700 -10.59164 -10.44130 -10.27876 -10.20073 -10.16568 -9.79125 -9.54840 -9.10018 -7.99172 -7.61816 -6.54224 -4.10621 2.61190 2.87097 3.04203 3.12737 3.17384 3.67893 3.98224 4.24813 4.32388 4.85129 4.95291 5.09378 5.25642 5.29827 5.43096 5.52635 5.60372 5.66945 5.78161 5.78911 5.80312 5.81542 5.90715 5.94879 6.01821 6.09154 6.25500 6.29100 6.33225 6.42090 6.52614 6.73325 6.75232 6.81647 7.28825 7.29763 7.41294 8.12482 8.24993 8.33599 8.79124 9.13429 9.52432 10.57535 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.007054 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.649614 B = 3968.465985 C = 4608.615086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.040 3.960 7 H 0.093 0.907 8 C -0.132 4.132 9 N -0.482 5.482 10 C 0.020 3.980 11 C 0.451 3.549 12 O -0.543 6.543 13 N -0.447 5.447 14 C -0.318 4.318 15 H 0.108 0.892 16 C 0.060 3.940 17 N -0.851 5.851 18 Si 0.859 3.141 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.258 1.258 22 C 0.094 3.906 23 C 0.456 3.544 24 O -0.493 6.493 25 O -0.525 6.525 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 -10.920 0.278 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 H 0.114 0.886 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.068 4.068 7 H 0.111 0.889 8 C -0.190 4.190 9 N -0.206 5.206 10 C -0.113 4.113 11 C 0.240 3.760 12 O -0.424 6.424 13 N -0.169 5.169 14 C -0.445 4.445 15 H 0.126 0.874 16 C -0.147 4.147 17 N -0.486 5.486 18 Si 0.685 3.315 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.182 1.182 22 C -0.032 4.032 23 C 0.296 3.704 24 O -0.378 6.378 25 O -0.337 6.337 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.947 -10.938 -0.453 13.527 hybrid contribution 0.100 0.758 0.856 1.147 sum -7.847 -10.180 0.402 12.859 Atomic orbital electron populations 1.21723 0.95044 1.01388 1.01004 1.23029 0.94628 0.99790 0.89715 0.88643 1.22218 0.97040 0.98498 0.97194 1.22233 0.97867 0.99554 0.95370 1.22972 0.91239 0.98649 0.93942 0.88949 1.21694 0.99941 0.97496 0.99833 1.65688 1.18356 1.34119 1.02413 1.22358 0.99976 0.92864 0.96060 1.21349 0.84259 0.85720 0.84671 1.90467 1.53542 1.74999 1.23424 1.43575 1.45446 1.23911 1.03950 1.19044 1.08078 0.86082 1.31274 0.87446 1.25382 0.97386 0.95697 0.96196 1.69788 1.31632 1.09149 1.38069 0.87247 0.86404 0.79174 0.78706 1.19701 1.20516 1.18211 1.21675 0.95758 0.98540 0.87213 1.24585 0.85543 0.80756 0.79532 1.90724 1.26025 1.52318 1.68718 1.84576 1.57000 1.61836 1.30257 0.93176 0.92752 0.92608 0.91988 0.91872 0.91989 0.91885 0.92802 0.92829 0.93034 0.89458 0.88858 0.91337 0.87813 0.86524 0.74037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.37 37.16 0.35 -1.50 16 2 C 0.04 0.60 2.52 -66.06 -0.17 0.44 16 3 H 0.10 1.94 5.20 -51.93 -0.27 1.67 16 4 C -0.11 -1.64 6.55 -25.34 -0.17 -1.81 16 5 C -0.11 -1.69 6.55 -25.35 -0.17 -1.86 16 6 C 0.04 0.70 2.51 -66.07 -0.17 0.53 16 7 H 0.09 2.00 5.14 -51.93 -0.27 1.73 16 8 C -0.13 -2.02 9.44 37.16 0.35 -1.67 16 9 N -0.48 -8.23 5.01 -215.76 -1.08 -9.31 16 10 C 0.02 0.35 4.38 -4.98 -0.02 0.33 16 11 C 0.45 10.11 6.40 -10.99 -0.07 10.04 16 12 O -0.54 -13.63 11.26 5.54 0.06 -13.57 16 13 N -0.45 -10.49 1.75 -116.09 -0.20 -10.70 16 14 C -0.32 -8.78 9.35 -14.93 -0.14 -8.92 16 15 H 0.11 3.41 7.90 -52.49 -0.41 2.99 16 16 C 0.06 1.61 5.23 -17.47 -0.09 1.52 16 17 N -0.85 -23.97 13.96 55.50 0.77 -23.20 16 18 Si 0.86 18.94 25.25 -169.99 -4.29 14.65 16 19 H -0.27 -5.43 6.55 56.52 0.37 -5.06 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 C 0.09 1.83 4.35 -5.19 -0.02 1.81 16 23 C 0.46 8.43 7.47 36.00 0.27 8.70 16 24 O -0.49 -10.76 16.97 -18.75 -0.32 -11.08 16 25 O -0.52 -7.35 13.42 -39.26 -0.53 -7.87 16 26 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.06 0.80 7.83 -51.93 -0.41 0.40 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.83 7.40 -51.93 -0.38 0.45 16 36 H 0.09 1.50 6.41 -51.93 -0.33 1.17 16 37 H 0.09 1.46 6.93 -51.93 -0.36 1.10 16 38 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.10 1.60 6.89 -51.93 -0.36 1.24 16 40 H 0.12 2.35 3.61 -51.92 -0.19 2.16 16 41 H 0.40 3.78 9.10 45.56 0.41 4.20 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -31.96 321.06 -5.83 -37.80 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.05 Total: 10.85 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.04 Total: 7.60 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.51 Total: -43.20 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.78 Total: -32.53 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.29 Total: 14.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.96 -5.83 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828214900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.486 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds