Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.37241 * 2 1 4 4 C 1.54385 * 110.51069 * 237.58487 * 2 1 3 5 5 C 1.54262 * 105.05873 * 217.31601 * 4 2 1 6 6 C 1.54378 * 105.06291 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.40910 * 265.06909 * 6 5 4 8 8 C 1.52998 * 110.41289 * 142.62989 * 6 5 4 9 9 N 1.48559 * 104.59432 * 23.85036 * 6 5 4 10 10 C 1.46896 * 110.99906 * 200.96383 * 9 6 5 11 11 C 1.50698 * 109.47537 * 55.28544 * 10 9 6 12 12 O 1.21299 * 119.99907 * 5.92887 * 11 10 9 13 13 N 1.34773 * 120.00308 * 185.93440 * 11 10 9 14 14 C 1.37094 * 120.00199 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00461 * 323.12726 * 14 13 11 16 16 C 1.38954 * 120.00323 * 143.12523 * 14 13 11 17 17 N 1.31410 * 120.00274 * 155.88653 * 16 14 13 18 18 Si 1.86800 * 119.99684 * 335.88521 * 16 14 13 19 19 H 1.48505 * 109.46944 * 92.91877 * 18 16 14 20 20 H 1.48498 * 109.47114 * 212.91660 * 18 16 14 21 21 H 1.48499 * 109.47360 * 332.92209 * 18 16 14 22 22 C 1.46500 * 119.99779 * 359.97438 * 13 11 10 23 23 C 1.50698 * 109.47308 * 83.27222 * 22 13 11 24 24 O 1.20832 * 119.99925 * 359.97438 * 23 22 13 25 25 O 1.34231 * 120.00257 * 180.02562 * 23 22 13 26 26 H 1.09000 * 109.46873 * 297.64700 * 1 2 3 27 27 H 1.09005 * 109.46980 * 57.64240 * 1 2 3 28 28 H 1.08998 * 109.47048 * 177.64632 * 1 2 3 29 29 H 1.08993 * 110.32512 * 336.21859 * 4 2 1 30 30 H 1.09003 * 110.32101 * 98.42548 * 4 2 1 31 31 H 1.08998 * 110.32062 * 118.89724 * 5 4 2 32 32 H 1.09002 * 110.32284 * 240.99867 * 5 4 2 33 33 H 1.09002 * 109.46606 * 308.63932 * 8 6 5 34 34 H 1.08998 * 109.46904 * 68.63540 * 8 6 5 35 35 H 1.08996 * 109.47116 * 188.63898 * 8 6 5 36 36 H 1.09004 * 109.46958 * 295.28289 * 10 9 6 37 37 H 1.09000 * 109.47340 * 175.28941 * 10 9 6 38 38 H 0.96997 * 119.99911 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47567 * 323.26525 * 22 13 11 40 40 H 1.09008 * 109.47271 * 203.27011 * 22 13 11 41 41 H 0.96700 * 117.00117 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7751 -1.2207 5 6 3.3209 -1.5162 -0.7031 6 6 3.4298 -1.1270 0.7869 7 1 4.1064 -0.2814 0.9105 8 6 3.9080 -2.3203 1.6165 9 7 2.0477 -0.7459 1.1762 10 6 2.0535 0.1018 2.3758 11 6 2.9359 1.3004 2.1398 12 8 3.4179 1.4922 1.0434 13 7 3.1897 2.1592 3.1470 14 6 3.9929 3.2492 2.9325 15 1 4.8495 3.1688 2.2795 16 6 3.7051 4.4577 3.5550 17 7 4.6603 5.3378 3.7549 18 14 1.9603 4.8313 4.1076 19 1 1.7901 4.4169 5.5235 20 1 1.7032 6.2886 3.9841 21 1 1.0004 4.0852 3.2548 22 6 2.6073 1.9277 4.4712 23 6 3.4639 0.9493 5.2328 24 8 4.4586 0.4918 4.7217 25 8 3.1213 0.5852 6.4785 26 1 -0.3633 0.4769 0.9103 27 1 -0.3633 0.5500 -0.8681 28 1 -0.3633 -1.0268 -0.0422 29 1 1.3276 -1.4888 -1.5757 30 1 2.3438 -0.0834 -2.0177 31 1 3.1911 -2.5937 -0.8040 32 1 4.2071 -1.1896 -1.2474 33 1 3.2861 -3.1881 1.3967 34 1 4.9451 -2.5440 1.3669 35 1 3.8333 -2.0789 2.6768 36 1 2.4350 -0.4692 3.2224 37 1 1.0380 0.4348 2.5904 38 1 4.4593 6.1812 4.1898 39 1 1.6022 1.5210 4.3601 40 1 2.5595 2.8702 5.0169 41 1 3.7015 -0.0451 6.9269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828214900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -120.331673 kcal Electronic energy + Delta-G solvation = -24574.676662 eV Core-core repulsion = 21068.646906 eV Total energy + Delta-G solvation = -3506.029756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90156 -40.96133 -39.17899 -37.17916 -36.58265 -34.33179 -33.49693 -33.22078 -29.78321 -29.33053 -28.23737 -25.77614 -24.69241 -23.25621 -21.80413 -21.21121 -20.30091 -19.22625 -19.21125 -18.34922 -17.62199 -17.12245 -16.85147 -16.60139 -16.06759 -15.99760 -15.81919 -15.17372 -14.76754 -14.44312 -14.26902 -14.05299 -13.95718 -13.76779 -13.47795 -13.05272 -12.92422 -12.82987 -12.57907 -12.49340 -12.35437 -12.26955 -11.98538 -11.86880 -11.76947 -11.66631 -11.50048 -11.28172 -11.17957 -10.89958 -9.87667 -9.18036 -8.57625 -6.21142 1.14454 1.15755 1.31779 1.44866 1.60876 2.05277 2.15671 2.60273 2.92486 2.99880 3.67233 3.72744 3.82511 3.92092 4.08912 4.19572 4.29677 4.36303 4.41302 4.44480 4.54104 4.57669 4.72767 4.77504 4.86459 4.91136 5.04241 5.05800 5.19069 5.23688 5.33018 5.40032 5.41499 5.50220 5.59802 5.92768 5.95597 6.04093 6.40237 6.84003 6.98659 7.16369 7.69884 8.59950 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.007054 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.649614 B = 3968.465985 C = 4608.615086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.109 4.109 5 C -0.110 4.110 6 C 0.033 3.967 7 H 0.041 0.959 8 C -0.124 4.124 9 N -0.468 5.468 10 C 0.029 3.971 11 C 0.444 3.556 12 O -0.581 6.581 13 N -0.460 5.460 14 C -0.337 4.337 15 H 0.036 0.964 16 C 0.010 3.990 17 N -0.905 5.905 18 Si 0.934 3.066 19 H -0.226 1.226 20 H -0.282 1.282 21 H -0.244 1.244 22 C 0.086 3.914 23 C 0.467 3.533 24 O -0.537 6.537 25 O -0.503 6.503 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.282 0.718 39 H 0.154 0.846 40 H 0.114 0.886 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 -13.012 1.743 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 H 0.070 0.930 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.075 4.075 7 H 0.059 0.941 8 C -0.181 4.181 9 N -0.191 5.191 10 C -0.103 4.103 11 C 0.235 3.765 12 O -0.465 6.465 13 N -0.183 5.183 14 C -0.465 4.465 15 H 0.054 0.946 16 C -0.193 4.193 17 N -0.542 5.542 18 Si 0.754 3.246 19 H -0.151 1.151 20 H -0.208 1.208 21 H -0.167 1.167 22 C -0.039 4.039 23 C 0.308 3.692 24 O -0.426 6.426 25 O -0.316 6.316 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.171 0.829 40 H 0.132 0.868 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -11.840 -13.067 1.059 17.665 hybrid contribution 1.443 1.361 0.383 2.020 sum -10.398 -11.706 1.442 15.724 Atomic orbital electron populations 1.21677 0.92288 1.02743 1.01691 1.23047 0.96767 0.97654 0.90388 0.92965 1.22246 0.97405 0.98730 0.96320 1.22248 0.97906 1.01165 0.93489 1.22928 0.90620 0.97720 0.96222 0.94127 1.21629 1.00663 0.97264 0.98576 1.65788 1.17599 1.33291 1.02383 1.22452 1.00297 0.90699 0.96843 1.22332 0.83898 0.86378 0.83922 1.90467 1.54816 1.75975 1.25203 1.43575 1.45352 1.23134 1.06198 1.18514 1.07388 0.88994 1.31569 0.94649 1.26260 1.02491 0.94548 0.95965 1.69914 1.34496 1.09969 1.39773 0.86069 0.78980 0.78765 0.80750 1.15069 1.20806 1.16736 1.21855 0.97807 0.99145 0.85109 1.24243 0.84400 0.80059 0.80449 1.90735 1.27784 1.54083 1.70047 1.84484 1.57037 1.62134 1.27941 0.92985 0.91669 0.90816 0.89155 0.92420 0.89305 0.92754 0.90352 0.92476 0.94219 0.88422 0.85648 0.90795 0.82855 0.86829 0.71204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.37 71.98 0.67 -2.42 16 2 C 0.03 0.95 2.52 45.06 0.11 1.06 16 3 H 0.05 2.18 5.20 -2.39 -0.01 2.17 16 4 C -0.11 -3.05 6.55 31.49 0.21 -2.84 16 5 C -0.11 -3.21 6.55 31.49 0.21 -3.01 16 6 C 0.03 1.17 2.51 45.06 0.11 1.28 16 7 H 0.04 1.88 5.14 -2.39 -0.01 1.86 16 8 C -0.12 -3.65 9.44 71.98 0.68 -2.97 16 9 N -0.47 -15.20 5.01 -836.53 -4.19 -19.39 16 10 C 0.03 1.00 4.38 85.56 0.37 1.37 16 11 C 0.44 20.44 6.40 87.66 0.56 21.00 16 12 O -0.58 -31.26 11.26 -3.09 -0.03 -31.30 16 13 N -0.46 -22.01 1.75 -639.59 -1.12 -23.13 16 14 C -0.34 -19.82 9.35 84.04 0.79 -19.03 16 15 H 0.04 2.51 7.90 -2.91 -0.02 2.49 16 16 C 0.01 0.56 5.23 84.93 0.44 1.00 16 17 N -0.91 -53.43 13.96 21.66 0.30 -53.13 16 18 Si 0.93 38.32 25.25 68.60 1.73 40.05 16 19 H -0.23 -7.73 6.55 99.48 0.65 -7.08 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 22 C 0.09 3.12 4.35 85.63 0.37 3.49 16 23 C 0.47 16.38 7.47 71.24 0.53 16.91 16 24 O -0.54 -23.63 16.97 21.94 0.37 -23.26 16 25 O -0.50 -12.17 13.42 -51.43 -0.69 -12.86 16 26 H 0.05 1.24 7.39 -2.39 -0.02 1.22 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 29 H 0.09 2.02 7.83 -2.39 -0.02 2.00 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 2.11 7.76 -2.39 -0.02 2.09 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.92 8.00 -2.39 -0.02 1.90 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.24 7.40 -2.39 -0.02 1.22 16 36 H 0.10 3.15 6.41 -2.38 -0.02 3.13 16 37 H 0.13 3.44 6.93 -2.39 -0.02 3.42 16 38 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.15 3.98 6.89 -2.39 -0.02 3.96 16 40 H 0.11 4.21 3.61 -2.38 -0.01 4.21 16 41 H 0.43 6.44 9.10 -74.06 -0.67 5.77 16 Total: -1.00 -78.06 321.06 1.76 -76.29 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.33 Total: 30.87 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 5.06 Total: 15.85 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -5.01 Total: -95.65 kcal Atomic # 8 Polarization: -67.07 SS G_CDS: -0.35 Total: -67.42 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.73 Total: 40.05 kcal Total: -78.06 1.76 -76.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828214900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.037 kcal (2) G-P(sol) polarization free energy of solvation -78.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds