Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 110.42227 * 2 1 4 4 C 1.54905 * 110.37685 * 237.68530 * 2 1 3 5 5 C 1.55136 * 101.65679 * 204.09826 * 4 2 1 6 6 C 1.54325 * 103.01615 * 35.65540 * 5 4 2 7 7 H 1.08995 * 109.88741 * 97.12308 * 6 5 4 8 8 C 1.53001 * 109.88360 * 218.31030 * 6 5 4 9 9 N 1.47441 * 107.23307 * 337.71408 * 6 5 4 10 10 C 1.46901 * 111.00056 * 236.74481 * 9 6 5 11 11 C 1.50707 * 109.47006 * 73.26271 * 10 9 6 12 12 O 1.21285 * 119.99859 * 351.85149 * 11 10 9 13 13 N 1.34777 * 119.99718 * 171.84613 * 11 10 9 14 14 C 1.37092 * 120.00050 * 176.58149 * 13 11 10 15 15 H 1.08000 * 120.00067 * 126.18181 * 14 13 11 16 16 C 1.38952 * 120.00084 * 306.18918 * 14 13 11 17 17 N 1.31411 * 120.00191 * 165.24922 * 16 14 13 18 18 Si 1.86795 * 119.99944 * 345.24370 * 16 14 13 19 19 H 1.48498 * 109.47202 * 95.86530 * 18 16 14 20 20 H 1.48499 * 109.47433 * 215.86741 * 18 16 14 21 21 H 1.48505 * 109.47283 * 335.86648 * 18 16 14 22 22 C 1.46504 * 119.99958 * 356.58172 * 13 11 10 23 23 C 1.50701 * 109.47230 * 274.39458 * 22 13 11 24 24 O 1.20825 * 119.99668 * 354.65342 * 23 22 13 25 25 O 1.34224 * 119.99787 * 174.64546 * 23 22 13 26 26 H 1.08996 * 109.47386 * 302.71770 * 1 2 3 27 27 H 1.09002 * 109.47397 * 62.72061 * 1 2 3 28 28 H 1.09000 * 109.47119 * 182.71672 * 1 2 3 29 29 H 1.09003 * 110.98918 * 86.00925 * 4 2 1 30 30 H 1.09002 * 110.98852 * 322.19101 * 4 2 1 31 31 H 1.08992 * 110.70844 * 277.27187 * 5 4 2 32 32 H 1.09001 * 110.70819 * 154.03129 * 5 4 2 33 33 H 1.09009 * 109.46896 * 173.76085 * 8 6 5 34 34 H 1.09000 * 109.47210 * 293.75515 * 8 6 5 35 35 H 1.08994 * 109.47511 * 53.76007 * 8 6 5 36 36 H 1.09002 * 109.46859 * 313.26890 * 10 9 6 37 37 H 1.08998 * 109.47253 * 193.26142 * 10 9 6 38 38 H 0.96997 * 120.00300 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46725 * 154.39559 * 22 13 11 40 40 H 1.09000 * 109.46965 * 34.40061 * 22 13 11 41 41 H 0.96706 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1995 -0.7358 6 6 3.2535 -1.4807 0.7648 7 1 3.1055 -2.5488 0.9238 8 6 4.4582 -0.9931 1.5721 9 7 2.0446 -0.7408 1.1714 10 6 2.3356 0.1718 2.2851 11 6 3.1304 1.3471 1.7770 12 8 3.5521 1.3478 0.6398 13 7 3.3725 2.3973 2.5863 14 6 4.1542 3.4346 2.1479 15 1 3.7815 4.4474 2.1911 16 6 5.4259 3.1831 1.6476 17 7 6.0599 4.1115 0.9671 18 14 6.2345 1.5253 1.9426 19 1 6.0045 0.6463 0.7680 20 1 7.6940 1.7146 2.1409 21 1 5.6479 0.8968 3.1535 22 6 2.8003 2.4302 3.9346 23 6 1.4060 2.9991 3.8748 24 8 0.9740 3.4309 2.8324 25 8 0.6442 3.0258 4.9796 26 1 -0.3634 0.5554 0.8646 27 1 -0.3634 0.4710 -0.9134 28 1 -0.3633 -1.0265 0.0487 29 1 2.1388 -0.1271 -2.1001 30 1 1.4515 -1.6488 -1.4396 31 1 4.1941 -0.3888 -0.8729 32 1 3.8119 -2.1004 -1.2509 33 1 4.2467 -1.0930 2.6368 34 1 5.3326 -1.5922 1.3177 35 1 4.6538 0.0531 1.3371 36 1 2.9121 -0.3552 3.0455 37 1 1.4003 0.5258 2.7186 38 1 6.9477 3.9361 0.6183 39 1 3.4205 3.0552 4.5772 40 1 2.7630 1.4185 4.3383 41 1 -0.2430 3.4005 4.8921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828214901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -61.743095 kcal Electronic energy + Delta-G solvation = -25303.980312 eV Core-core repulsion = 21800.491147 eV Total energy + Delta-G solvation = -3503.489164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70410 -39.68276 -37.60338 -35.76594 -34.54651 -32.66135 -32.23668 -31.51462 -28.10777 -27.83358 -26.67113 -24.00154 -23.30649 -21.70346 -20.49680 -19.84957 -18.81359 -17.75591 -17.30963 -16.69626 -15.92385 -15.66600 -15.56697 -15.37007 -14.97141 -14.21441 -13.87701 -13.47868 -13.28456 -12.85408 -12.80927 -12.61563 -12.41644 -12.24072 -11.81614 -11.71941 -11.39153 -11.29392 -11.13979 -11.09895 -10.91877 -10.53647 -10.40597 -10.24046 -10.17576 -10.03282 -9.98250 -9.75194 -8.96993 -8.72262 -7.94926 -7.47169 -6.32387 -4.21081 2.61099 3.04357 3.22849 3.24483 3.32383 3.75260 4.22624 4.32337 4.33262 4.95570 5.08120 5.11394 5.32853 5.39867 5.51044 5.61563 5.63642 5.74326 5.77389 5.78824 5.83422 5.90803 5.94837 6.03560 6.11817 6.20121 6.24658 6.36029 6.49905 6.54560 6.64823 6.79212 6.87510 6.92028 7.40205 7.44270 7.69425 7.90953 8.27625 8.59669 8.75592 9.23126 9.58486 10.73642 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.010839 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.976972 B = 2582.695254 C = 3870.258441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.041 3.959 3 H 0.106 0.894 4 C -0.113 4.113 5 C -0.130 4.130 6 C 0.081 3.919 7 H 0.074 0.926 8 C -0.223 4.223 9 N -0.500 5.500 10 C 0.017 3.983 11 C 0.449 3.551 12 O -0.520 6.520 13 N -0.453 5.453 14 C -0.341 4.341 15 H 0.092 0.908 16 C 0.094 3.906 17 N -0.862 5.862 18 Si 0.884 3.116 19 H -0.249 1.249 20 H -0.299 1.299 21 H -0.271 1.271 22 C 0.109 3.891 23 C 0.451 3.549 24 O -0.494 6.494 25 O -0.526 6.526 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -9.217 5.065 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.066 4.066 3 H 0.123 0.877 4 C -0.151 4.151 5 C -0.168 4.168 6 C -0.027 4.027 7 H 0.092 0.908 8 C -0.279 4.279 9 N -0.224 5.224 10 C -0.115 4.115 11 C 0.238 3.762 12 O -0.401 6.401 13 N -0.177 5.177 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.115 4.115 17 N -0.496 5.496 18 Si 0.713 3.287 19 H -0.175 1.175 20 H -0.227 1.227 21 H -0.196 1.196 22 C -0.017 4.017 23 C 0.290 3.710 24 O -0.379 6.379 25 O -0.338 6.338 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.096 -9.540 4.282 12.637 hybrid contribution 0.456 0.129 0.008 0.474 sum -6.641 -9.411 4.290 12.291 Atomic orbital electron populations 1.21685 0.95320 1.01059 1.00801 1.23144 0.94322 1.00655 0.88479 0.87659 1.22543 0.95924 0.99142 0.97529 1.22786 0.98074 1.01141 0.94837 1.22169 0.88563 0.97339 0.94586 0.90815 1.23673 0.97986 1.06761 0.99516 1.64024 1.27226 1.23835 1.07268 1.22590 0.99823 0.92654 0.96461 1.21521 0.82149 0.85988 0.86500 1.90505 1.51758 1.80207 1.17658 1.43506 1.44948 1.19909 1.09305 1.18773 0.95596 0.87848 1.44563 0.89057 1.25353 0.95880 0.97266 0.93044 1.69706 1.14068 1.34769 1.31028 0.87088 0.77461 0.84292 0.79853 1.17453 1.22683 1.19633 1.21248 0.88007 1.02306 0.90183 1.24732 0.88966 0.76362 0.80892 1.90750 1.72995 1.42645 1.31544 1.84564 1.31024 1.77782 1.40404 0.93355 0.92897 0.92912 0.91456 0.92022 0.89888 0.92380 0.92795 0.93115 0.87062 0.88256 0.89748 0.91624 0.85852 0.88402 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.59 37.15 0.36 -1.70 16 2 C 0.04 0.76 2.41 -66.19 -0.16 0.60 16 3 H 0.11 2.38 4.69 -52.01 -0.24 2.14 16 4 C -0.11 -1.88 6.49 -24.60 -0.16 -2.04 16 5 C -0.13 -2.27 5.94 -24.91 -0.15 -2.42 16 6 C 0.08 1.42 3.72 -66.72 -0.25 1.17 16 7 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 8 C -0.22 -4.20 5.72 37.16 0.21 -3.98 16 9 N -0.50 -8.92 5.07 -216.95 -1.10 -10.02 16 10 C 0.02 0.30 4.08 -4.97 -0.02 0.28 16 11 C 0.45 10.01 3.85 -10.98 -0.04 9.97 16 12 O -0.52 -13.08 7.89 5.55 0.04 -13.04 16 13 N -0.45 -10.32 1.45 -116.09 -0.17 -10.49 16 14 C -0.34 -9.30 9.43 -14.93 -0.14 -9.44 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.09 2.63 4.98 -17.47 -0.09 2.54 16 17 N -0.86 -25.49 13.96 55.50 0.77 -24.71 16 18 Si 0.88 21.59 22.56 -169.99 -3.83 17.75 16 19 H -0.25 -6.16 5.58 56.52 0.32 -5.84 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.11 6.99 56.52 0.39 -5.72 16 22 C 0.11 1.89 5.68 -5.19 -0.03 1.86 16 23 C 0.45 7.65 7.77 36.01 0.28 7.93 16 24 O -0.49 -10.51 17.18 -18.75 -0.32 -10.83 16 25 O -0.53 -6.58 13.42 -39.24 -0.53 -7.11 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.08 1.72 6.81 -51.93 -0.35 1.36 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.93 6.01 -51.92 -0.31 0.62 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 2.45 0.31 -51.93 -0.02 2.44 16 36 H 0.10 1.63 5.49 -51.93 -0.28 1.34 16 37 H 0.08 1.43 7.26 -51.93 -0.38 1.06 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.12 1.96 8.01 -51.93 -0.42 1.54 16 40 H 0.10 1.36 6.82 -51.93 -0.35 1.01 16 41 H 0.40 3.37 9.10 45.56 0.41 3.78 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -33.16 306.78 -5.67 -38.83 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.97 Total: 10.21 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.19 Total: 4.77 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.49 Total: -45.22 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.81 Total: -30.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -3.83 Total: 17.75 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.16 -5.67 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828214901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.912 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds