Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 110.42227 * 2 1 4 4 C 1.54905 * 110.37685 * 237.68530 * 2 1 3 5 5 C 1.55136 * 101.65679 * 204.09826 * 4 2 1 6 6 C 1.54325 * 103.01615 * 35.65540 * 5 4 2 7 7 H 1.08995 * 109.88741 * 97.12308 * 6 5 4 8 8 C 1.53001 * 109.88360 * 218.31030 * 6 5 4 9 9 N 1.47441 * 107.23307 * 337.71408 * 6 5 4 10 10 C 1.46901 * 111.00056 * 236.74481 * 9 6 5 11 11 C 1.50707 * 109.47006 * 73.26271 * 10 9 6 12 12 O 1.21285 * 119.99859 * 351.85149 * 11 10 9 13 13 N 1.34777 * 119.99718 * 171.84613 * 11 10 9 14 14 C 1.37092 * 120.00050 * 176.58149 * 13 11 10 15 15 H 1.08000 * 120.00067 * 126.18181 * 14 13 11 16 16 C 1.38952 * 120.00084 * 306.18918 * 14 13 11 17 17 N 1.31411 * 120.00191 * 165.24922 * 16 14 13 18 18 Si 1.86795 * 119.99944 * 345.24370 * 16 14 13 19 19 H 1.48498 * 109.47202 * 95.86530 * 18 16 14 20 20 H 1.48499 * 109.47433 * 215.86741 * 18 16 14 21 21 H 1.48505 * 109.47283 * 335.86648 * 18 16 14 22 22 C 1.46504 * 119.99958 * 356.58172 * 13 11 10 23 23 C 1.50701 * 109.47230 * 274.39458 * 22 13 11 24 24 O 1.20825 * 119.99668 * 354.65342 * 23 22 13 25 25 O 1.34224 * 119.99787 * 174.64546 * 23 22 13 26 26 H 1.08996 * 109.47386 * 302.71770 * 1 2 3 27 27 H 1.09002 * 109.47397 * 62.72061 * 1 2 3 28 28 H 1.09000 * 109.47119 * 182.71672 * 1 2 3 29 29 H 1.09003 * 110.98918 * 86.00925 * 4 2 1 30 30 H 1.09002 * 110.98852 * 322.19101 * 4 2 1 31 31 H 1.08992 * 110.70844 * 277.27187 * 5 4 2 32 32 H 1.09001 * 110.70819 * 154.03129 * 5 4 2 33 33 H 1.09009 * 109.46896 * 173.76085 * 8 6 5 34 34 H 1.09000 * 109.47210 * 293.75515 * 8 6 5 35 35 H 1.08994 * 109.47511 * 53.76007 * 8 6 5 36 36 H 1.09002 * 109.46859 * 313.26890 * 10 9 6 37 37 H 1.08998 * 109.47253 * 193.26142 * 10 9 6 38 38 H 0.96997 * 120.00300 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46725 * 154.39559 * 22 13 11 40 40 H 1.09000 * 109.46965 * 34.40061 * 22 13 11 41 41 H 0.96706 * 116.99714 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1995 -0.7358 6 6 3.2535 -1.4807 0.7648 7 1 3.1055 -2.5488 0.9238 8 6 4.4582 -0.9931 1.5721 9 7 2.0446 -0.7408 1.1714 10 6 2.3356 0.1718 2.2851 11 6 3.1304 1.3471 1.7770 12 8 3.5521 1.3478 0.6398 13 7 3.3725 2.3973 2.5863 14 6 4.1542 3.4346 2.1479 15 1 3.7815 4.4474 2.1911 16 6 5.4259 3.1831 1.6476 17 7 6.0599 4.1115 0.9671 18 14 6.2345 1.5253 1.9426 19 1 6.0045 0.6463 0.7680 20 1 7.6940 1.7146 2.1409 21 1 5.6479 0.8968 3.1535 22 6 2.8003 2.4302 3.9346 23 6 1.4060 2.9991 3.8748 24 8 0.9740 3.4309 2.8324 25 8 0.6442 3.0258 4.9796 26 1 -0.3634 0.5554 0.8646 27 1 -0.3634 0.4710 -0.9134 28 1 -0.3633 -1.0265 0.0487 29 1 2.1388 -0.1271 -2.1001 30 1 1.4515 -1.6488 -1.4396 31 1 4.1941 -0.3888 -0.8729 32 1 3.8119 -2.1004 -1.2509 33 1 4.2467 -1.0930 2.6368 34 1 5.3326 -1.5922 1.3177 35 1 4.6538 0.0531 1.3371 36 1 2.9121 -0.3552 3.0455 37 1 1.4003 0.5258 2.7186 38 1 6.9477 3.9361 0.6183 39 1 3.4205 3.0552 4.5772 40 1 2.7630 1.4185 4.3383 41 1 -0.2430 3.4005 4.8921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828214901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -88.215767 kcal Electronic energy + Delta-G solvation = -25305.128253 eV Core-core repulsion = 21800.491147 eV Total energy + Delta-G solvation = -3504.637105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24066 -41.03775 -39.14414 -37.07202 -36.26426 -34.43411 -33.81203 -32.98054 -29.69312 -29.17040 -28.23096 -25.75624 -24.70038 -23.08404 -21.87001 -21.49660 -20.39702 -19.06352 -19.03027 -18.18955 -17.43427 -17.23116 -17.12450 -16.79134 -16.57050 -15.66730 -15.42769 -15.15282 -15.06245 -14.33582 -14.24061 -13.96161 -13.84125 -13.76045 -13.31724 -13.15545 -12.97486 -12.85799 -12.62084 -12.45489 -12.28766 -12.15377 -12.00402 -11.75414 -11.66938 -11.57948 -11.47718 -11.20066 -10.86847 -10.49875 -9.70342 -9.10547 -8.43015 -6.34932 1.21642 1.27468 1.31572 1.38875 1.66194 2.22680 2.31092 2.68824 2.94981 2.97769 3.72459 3.77516 3.81965 4.07392 4.12881 4.28959 4.32062 4.37661 4.44946 4.50304 4.55327 4.58189 4.64388 4.73239 4.82731 4.85716 4.98014 5.02056 5.17335 5.22672 5.25056 5.48984 5.54393 5.64618 5.67714 5.86441 6.02430 6.04000 6.66453 6.86015 7.07075 7.22141 7.76423 8.65472 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013014 B = 0.010839 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.976972 B = 2582.695254 C = 3870.258441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.037 3.963 3 H 0.057 0.943 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.079 3.921 7 H 0.105 0.895 8 C -0.230 4.230 9 N -0.490 5.490 10 C 0.024 3.976 11 C 0.445 3.555 12 O -0.553 6.553 13 N -0.470 5.470 14 C -0.335 4.335 15 H 0.044 0.956 16 C 0.042 3.958 17 N -0.916 5.916 18 Si 0.944 3.056 19 H -0.259 1.259 20 H -0.305 1.305 21 H -0.235 1.235 22 C 0.101 3.899 23 C 0.464 3.536 24 O -0.547 6.547 25 O -0.503 6.503 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.273 0.727 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -12.848 7.115 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.071 4.071 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.028 4.028 7 H 0.123 0.877 8 C -0.286 4.286 9 N -0.212 5.212 10 C -0.108 4.108 11 C 0.236 3.764 12 O -0.435 6.435 13 N -0.195 5.195 14 C -0.463 4.463 15 H 0.062 0.938 16 C -0.162 4.162 17 N -0.553 5.553 18 Si 0.770 3.230 19 H -0.185 1.185 20 H -0.234 1.234 21 H -0.158 1.158 22 C -0.024 4.024 23 C 0.306 3.694 24 O -0.437 6.437 25 O -0.316 6.316 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -8.683 -13.181 6.396 17.030 hybrid contribution 0.769 1.327 -0.626 1.656 sum -7.913 -11.854 5.771 15.377 Atomic orbital electron populations 1.21608 0.93283 1.02311 1.00788 1.23049 0.95903 0.98341 0.89762 0.92507 1.22547 0.95876 0.99760 0.96465 1.22753 0.97509 1.00770 0.95912 1.22325 0.87893 0.98721 0.93905 0.87699 1.23643 0.99161 1.04887 1.00952 1.64165 1.27199 1.23013 1.06851 1.22685 0.99989 0.90958 0.97128 1.22368 0.81391 0.86607 0.86044 1.90518 1.52620 1.81041 1.19313 1.43590 1.45217 1.18929 1.11715 1.18464 0.95840 0.87420 1.44541 0.93822 1.26110 0.96610 1.00688 0.92757 1.69840 1.14706 1.37253 1.33491 0.86191 0.75950 0.80091 0.80718 1.18475 1.23380 1.15824 1.21497 0.88098 1.05436 0.87338 1.24525 0.89053 0.75065 0.80785 1.90756 1.74126 1.45098 1.33713 1.84486 1.32223 1.77141 1.37777 0.94153 0.92373 0.90739 0.92414 0.89094 0.94118 0.89709 0.90846 0.92148 0.90261 0.85402 0.88272 0.91766 0.84530 0.83743 0.71473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 9.59 71.98 0.69 -2.87 16 2 C 0.04 1.31 2.41 45.38 0.11 1.42 16 3 H 0.06 2.62 4.69 -3.76 -0.02 2.60 16 4 C -0.11 -3.40 6.49 31.98 0.21 -3.19 16 5 C -0.13 -4.34 5.94 31.78 0.19 -4.15 16 6 C 0.08 2.48 3.72 45.26 0.17 2.64 16 7 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 8 C -0.23 -7.86 5.72 71.98 0.41 -7.45 16 9 N -0.49 -15.79 5.07 -840.30 -4.26 -20.05 16 10 C 0.02 0.80 4.08 85.56 0.35 1.15 16 11 C 0.45 19.44 3.85 87.66 0.34 19.77 16 12 O -0.55 -28.25 7.89 -3.04 -0.02 -28.27 16 13 N -0.47 -21.21 1.45 -639.58 -0.93 -22.14 16 14 C -0.34 -18.97 9.43 84.04 0.79 -18.18 16 15 H 0.04 2.82 8.06 -2.91 -0.02 2.79 16 16 C 0.04 2.44 4.98 84.93 0.42 2.87 16 17 N -0.92 -57.26 13.96 21.66 0.30 -56.95 16 18 Si 0.94 45.33 22.56 68.60 1.55 46.87 16 19 H -0.26 -12.77 5.58 99.48 0.56 -12.22 16 20 H -0.31 -14.66 7.11 99.48 0.71 -13.96 16 21 H -0.24 -9.69 6.99 99.48 0.70 -8.99 16 22 C 0.10 3.26 5.68 85.63 0.49 3.74 16 23 C 0.46 14.86 7.77 71.24 0.55 15.41 16 24 O -0.55 -23.29 17.18 21.97 0.38 -22.91 16 25 O -0.50 -10.83 13.42 -51.36 -0.69 -11.52 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.32 8.06 -2.39 -0.02 2.30 16 31 H 0.04 1.69 6.81 -2.39 -0.02 1.68 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.16 6.01 -2.38 -0.01 2.14 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 3.34 0.31 -2.39 0.00 3.34 16 36 H 0.13 3.48 5.49 -2.39 -0.01 3.47 16 37 H 0.10 2.99 7.26 -2.39 -0.02 2.97 16 38 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.14 4.03 8.01 -2.38 -0.02 4.02 16 40 H 0.15 3.30 6.82 -2.39 -0.02 3.28 16 41 H 0.42 5.66 9.10 -74.05 -0.67 4.99 16 Total: -1.00 -78.09 306.78 1.26 -76.82 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.22 Total: 26.98 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 4.72 Total: 11.17 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.88 Total: -99.14 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -0.34 Total: -62.70 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.55 Total: 46.87 kcal Total: -78.09 1.26 -76.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828214901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.395 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds