Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49100 * 2 1 4 4 C 1.53045 * 109.49576 * 120.05949 * 2 1 3 5 5 C 1.53041 * 109.53313 * 181.35289 * 4 2 1 6 6 C 1.53191 * 109.31455 * 298.63591 * 5 4 2 7 7 N 1.46922 * 108.77446 * 54.63712 * 6 5 4 8 8 C 1.34774 * 120.63159 * 126.41889 * 7 6 5 9 9 O 1.21285 * 120.00138 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99817 * 359.97438 * 8 7 6 11 11 N 1.46501 * 109.47189 * 180.02562 * 10 8 7 12 12 C 1.36939 * 120.00133 * 270.00566 * 11 10 8 13 13 H 1.07993 * 120.00109 * 16.22061 * 12 11 10 14 14 C 1.38815 * 120.00058 * 196.21807 * 12 11 10 15 15 N 1.31625 * 119.99830 * 22.12664 * 14 12 11 16 16 Si 1.86789 * 120.00196 * 202.12647 * 14 12 11 17 17 H 1.48498 * 109.47514 * 89.99953 * 16 14 12 18 18 H 1.48503 * 109.47300 * 210.00057 * 16 14 12 19 19 H 1.48504 * 109.47454 * 330.00053 * 16 14 12 20 20 C 1.46505 * 119.99805 * 89.99893 * 11 10 8 21 21 C 1.50709 * 109.46534 * 84.01596 * 20 11 10 22 22 O 1.20819 * 120.00085 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99466 * 179.97438 * 21 20 11 24 24 C 1.46925 * 118.74021 * 306.38814 * 7 6 5 25 25 H 1.08993 * 109.47117 * 299.99723 * 1 2 3 26 26 H 1.09002 * 109.47149 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.46489 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46045 * 301.37184 * 4 2 1 29 29 H 1.08993 * 109.45928 * 61.34664 * 4 2 1 30 30 H 1.08997 * 109.49864 * 58.58763 * 5 4 2 31 31 H 1.09005 * 109.49401 * 178.65411 * 5 4 2 32 32 H 1.08997 * 109.59055 * 174.42590 * 6 5 4 33 33 H 1.09001 * 109.58539 * 294.70838 * 6 5 4 34 34 H 1.08991 * 109.47682 * 300.00674 * 10 8 7 35 35 H 1.09002 * 109.47006 * 60.00949 * 10 8 7 36 36 H 0.96997 * 119.99758 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46832 * 204.01132 * 20 11 10 38 38 H 1.08996 * 109.47267 * 324.01576 * 20 11 10 39 39 H 0.96701 * 116.99316 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.59393 * 293.82535 * 24 7 6 41 41 H 1.09005 * 109.58923 * 173.39590 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7226 1.2487 5 6 3.5708 -0.6937 1.2667 6 6 4.1060 -1.4253 0.0317 7 7 3.5054 -0.8282 -1.1688 8 6 4.2819 -0.3853 -2.1774 9 8 3.7740 0.1061 -3.1631 10 6 5.7814 -0.4996 -2.0799 11 7 6.3929 0.0485 -3.2932 12 6 6.6300 -0.7657 -4.3684 13 1 6.1433 -1.7275 -4.4351 14 6 7.4959 -0.3549 -5.3726 15 7 8.4040 0.5646 -5.1230 16 14 7.3723 -1.1069 -7.0779 17 1 6.4319 -0.3082 -7.9042 18 1 8.7131 -1.1090 -7.7164 19 1 6.8737 -2.5015 -6.9691 20 6 6.7505 1.4679 -3.3562 21 6 8.1056 1.6726 -2.7291 22 8 8.7101 0.7299 -2.2757 23 8 8.6407 2.9024 -2.6743 24 6 2.0421 -0.7237 -1.2493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6577 -0.2241 2.1390 29 1 1.6975 -1.7570 1.2355 30 1 3.9153 0.3403 1.2547 31 1 3.9334 -1.1877 2.1683 32 1 5.1903 -1.3227 -0.0125 33 1 3.8410 -2.4810 0.0890 34 1 6.1328 0.0587 -1.2123 35 1 6.0598 -1.5482 -1.9744 36 1 9.0093 0.8514 -5.8246 37 1 6.7797 1.7893 -4.3973 38 1 6.0076 2.0541 -2.8155 39 1 9.5118 2.9841 -2.2623 40 1 1.6065 -1.7217 -1.2977 41 1 1.7645 -0.1581 -2.1388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828258851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -105.311498 kcal Electronic energy + Delta-G solvation = -23671.633387 eV Core-core repulsion = 20166.254955 eV Total energy + Delta-G solvation = -3505.378432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.79857 -38.69332 -37.33546 -35.40277 -34.32939 -33.65705 -31.73415 -31.35567 -28.43257 -27.02618 -26.21502 -24.86432 -22.47738 -22.24125 -20.49439 -19.94595 -18.59258 -16.89529 -16.81436 -16.47714 -15.74859 -15.09785 -15.00434 -14.86417 -14.55907 -14.39406 -14.09954 -13.68100 -13.37334 -13.31826 -12.97291 -12.65426 -12.57918 -12.02644 -11.86621 -11.73637 -11.36754 -11.15165 -11.01341 -10.90596 -10.80231 -10.69540 -10.60997 -10.41024 -10.17312 -10.01537 -9.94217 -9.44048 -9.05151 -8.50529 -8.26144 -7.06874 -5.91038 -3.22695 3.32640 3.35543 3.42764 3.47777 3.49771 3.87103 4.33641 4.57413 4.61195 4.74924 4.77796 4.97907 5.17707 5.25687 5.32865 5.38420 5.42878 5.50004 5.55737 5.65350 5.71048 5.81167 5.82794 5.92903 6.01110 6.04488 6.09029 6.18923 6.24140 6.33135 6.41941 6.87813 6.93022 7.06511 7.69365 7.83811 7.85839 8.16506 8.88926 9.02319 9.41528 9.69382 10.10216 11.20799 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.005087 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.326403 B = 5502.895713 C = 6313.235265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.136 4.136 6 C 0.110 3.890 7 N -0.626 5.626 8 C 0.483 3.517 9 O -0.521 6.521 10 C 0.135 3.865 11 N -0.544 5.544 12 C -0.248 4.248 13 H 0.078 0.922 14 C 0.003 3.997 15 N -0.905 5.905 16 Si 0.913 3.087 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.192 3.808 21 C 0.479 3.521 22 O -0.517 6.517 23 O -0.542 6.542 24 C 0.116 3.884 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.258 0.742 37 H 0.116 0.884 38 H 0.051 0.949 39 H 0.381 0.619 40 H 0.057 0.943 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 -0.428 13.325 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.014 4.014 7 N -0.363 5.363 8 C 0.270 3.730 9 O -0.394 6.394 10 C 0.004 3.996 11 N -0.262 5.262 12 C -0.377 4.377 13 H 0.095 0.905 14 C -0.195 4.195 15 N -0.550 5.550 16 Si 0.743 3.257 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.205 1.205 20 C 0.063 3.937 21 C 0.319 3.681 22 O -0.403 6.403 23 O -0.352 6.352 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.237 0.763 40 H 0.075 0.925 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.997 -0.427 12.538 16.682 hybrid contribution 0.714 -0.406 -0.541 0.984 sum -10.282 -0.833 11.997 15.822 Atomic orbital electron populations 1.21759 0.94805 1.01806 1.01817 1.21511 0.95567 1.00259 0.95343 0.90911 1.21564 0.95414 1.00595 0.97425 1.21934 0.96005 1.01609 0.97902 1.21649 0.98829 0.96631 0.84296 1.48421 1.05964 1.63029 1.18877 1.23041 0.91811 0.76495 0.81653 1.90630 1.75343 1.43035 1.30426 1.20700 0.87665 1.00304 0.90934 1.43406 1.66133 1.04772 1.11848 1.19189 1.21270 1.00940 0.96262 0.90458 1.24791 0.95552 0.99490 0.99671 1.69867 1.18457 1.34607 1.32052 0.86120 0.76738 0.78736 0.84145 1.21259 1.21908 1.20481 1.20160 0.86534 0.85073 1.01917 1.25258 0.90263 0.78606 0.73996 1.90494 1.62473 1.42004 1.45363 1.84634 1.37508 1.36234 1.76868 1.21506 0.80903 0.99933 0.98387 0.92630 0.92437 0.92656 0.92048 0.91945 0.91466 0.90941 0.89412 0.91876 0.91361 0.89963 0.93224 0.86589 0.93109 0.76350 0.92450 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.11 -1.13 2.87 -90.50 -0.26 -1.39 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.01 5.17 -26.69 -0.14 -1.15 16 5 C -0.14 -1.30 6.08 -26.61 -0.16 -1.46 16 6 C 0.11 1.27 6.34 -3.71 -0.02 1.24 16 7 N -0.63 -9.42 2.97 -172.77 -0.51 -9.93 16 8 C 0.48 9.49 7.77 -10.99 -0.09 9.40 16 9 O -0.52 -12.33 15.84 5.55 0.09 -12.25 16 10 C 0.14 2.78 4.46 -5.19 -0.02 2.76 16 11 N -0.54 -13.72 1.52 -175.98 -0.27 -13.99 16 12 C -0.25 -6.88 9.66 -15.06 -0.15 -7.02 16 13 H 0.08 2.13 7.92 -52.49 -0.42 1.72 16 14 C 0.00 0.07 4.86 -17.43 -0.08 -0.01 16 15 N -0.90 -26.06 9.31 55.49 0.52 -25.54 16 16 Si 0.91 22.37 29.61 -169.99 -5.03 17.33 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.19 4.70 5.49 -5.19 -0.03 4.67 16 21 C 0.48 11.58 6.54 36.01 0.24 11.82 16 22 O -0.52 -13.94 16.89 -18.74 -0.32 -14.26 16 23 O -0.54 -11.09 13.42 -39.26 -0.53 -11.62 16 24 C 0.12 1.54 5.72 -3.71 -0.02 1.52 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.02 5.93 -51.93 -0.31 0.72 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.29 7.62 -51.93 -0.40 0.89 16 35 H 0.08 1.63 7.84 -51.93 -0.41 1.22 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 3.10 6.35 -51.93 -0.33 2.77 16 38 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 39 H 0.38 6.12 9.10 45.56 0.41 6.53 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -34.38 334.67 -6.99 -41.37 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.59 Total: 4.37 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -0.39 Total: 19.47 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.26 Total: -49.46 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.76 Total: -38.13 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.38 -6.99 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828258851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.940 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds