Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49100 * 2 1 4 4 C 1.53045 * 109.49576 * 120.05949 * 2 1 3 5 5 C 1.53041 * 109.53313 * 181.35289 * 4 2 1 6 6 C 1.53191 * 109.31455 * 298.63591 * 5 4 2 7 7 N 1.46922 * 108.77446 * 54.63712 * 6 5 4 8 8 C 1.34774 * 120.63159 * 126.41889 * 7 6 5 9 9 O 1.21285 * 120.00138 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99817 * 359.97438 * 8 7 6 11 11 N 1.46501 * 109.47189 * 180.02562 * 10 8 7 12 12 C 1.36939 * 120.00133 * 270.00566 * 11 10 8 13 13 H 1.07993 * 120.00109 * 16.22061 * 12 11 10 14 14 C 1.38815 * 120.00058 * 196.21807 * 12 11 10 15 15 N 1.31625 * 119.99830 * 22.12664 * 14 12 11 16 16 Si 1.86789 * 120.00196 * 202.12647 * 14 12 11 17 17 H 1.48498 * 109.47514 * 89.99953 * 16 14 12 18 18 H 1.48503 * 109.47300 * 210.00057 * 16 14 12 19 19 H 1.48504 * 109.47454 * 330.00053 * 16 14 12 20 20 C 1.46505 * 119.99805 * 89.99893 * 11 10 8 21 21 C 1.50709 * 109.46534 * 84.01596 * 20 11 10 22 22 O 1.20819 * 120.00085 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99466 * 179.97438 * 21 20 11 24 24 C 1.46925 * 118.74021 * 306.38814 * 7 6 5 25 25 H 1.08993 * 109.47117 * 299.99723 * 1 2 3 26 26 H 1.09002 * 109.47149 * 60.00354 * 1 2 3 27 27 H 1.08998 * 109.46489 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46045 * 301.37184 * 4 2 1 29 29 H 1.08993 * 109.45928 * 61.34664 * 4 2 1 30 30 H 1.08997 * 109.49864 * 58.58763 * 5 4 2 31 31 H 1.09005 * 109.49401 * 178.65411 * 5 4 2 32 32 H 1.08997 * 109.59055 * 174.42590 * 6 5 4 33 33 H 1.09001 * 109.58539 * 294.70838 * 6 5 4 34 34 H 1.08991 * 109.47682 * 300.00674 * 10 8 7 35 35 H 1.09002 * 109.47006 * 60.00949 * 10 8 7 36 36 H 0.96997 * 119.99758 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46832 * 204.01132 * 20 11 10 38 38 H 1.08996 * 109.47267 * 324.01576 * 20 11 10 39 39 H 0.96701 * 116.99316 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.59393 * 293.82535 * 24 7 6 41 41 H 1.09005 * 109.58923 * 173.39590 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7226 1.2487 5 6 3.5708 -0.6937 1.2667 6 6 4.1060 -1.4253 0.0317 7 7 3.5054 -0.8282 -1.1688 8 6 4.2819 -0.3853 -2.1774 9 8 3.7740 0.1061 -3.1631 10 6 5.7814 -0.4996 -2.0799 11 7 6.3929 0.0485 -3.2932 12 6 6.6300 -0.7657 -4.3684 13 1 6.1433 -1.7275 -4.4351 14 6 7.4959 -0.3549 -5.3726 15 7 8.4040 0.5646 -5.1230 16 14 7.3723 -1.1069 -7.0779 17 1 6.4319 -0.3082 -7.9042 18 1 8.7131 -1.1090 -7.7164 19 1 6.8737 -2.5015 -6.9691 20 6 6.7505 1.4679 -3.3562 21 6 8.1056 1.6726 -2.7291 22 8 8.7101 0.7299 -2.2757 23 8 8.6407 2.9024 -2.6743 24 6 2.0421 -0.7237 -1.2493 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.6577 -0.2241 2.1390 29 1 1.6975 -1.7570 1.2355 30 1 3.9153 0.3403 1.2547 31 1 3.9334 -1.1877 2.1683 32 1 5.1903 -1.3227 -0.0125 33 1 3.8410 -2.4810 0.0890 34 1 6.1328 0.0587 -1.2123 35 1 6.0598 -1.5482 -1.9744 36 1 9.0093 0.8514 -5.8246 37 1 6.7797 1.7893 -4.3973 38 1 6.0076 2.0541 -2.8155 39 1 9.5118 2.9841 -2.2623 40 1 1.6065 -1.7217 -1.2977 41 1 1.7645 -0.1581 -2.1388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828258851.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -127.934598 kcal Electronic energy + Delta-G solvation = -23672.614398 eV Core-core repulsion = 20166.254955 eV Total energy + Delta-G solvation = -3506.359443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14074 -40.51653 -38.62966 -37.21691 -36.22328 -34.76571 -33.37000 -32.65046 -30.11694 -28.70153 -27.34725 -26.16574 -24.28020 -23.13616 -22.14163 -21.14649 -19.91900 -18.82632 -18.58346 -18.00026 -17.33556 -16.89940 -16.51399 -16.29902 -16.00747 -15.63052 -15.27996 -15.25821 -15.04571 -14.56082 -14.22943 -13.94785 -13.59579 -13.43751 -13.32890 -12.99512 -12.91549 -12.65240 -12.61495 -12.47858 -12.12345 -12.04241 -11.96563 -11.88197 -11.72321 -11.55910 -11.32674 -11.24591 -10.82103 -10.47885 -9.49268 -9.03288 -8.00854 -5.32933 1.44253 1.48739 1.55581 1.81264 1.94191 2.08234 2.48084 2.73574 3.21476 3.49388 3.71736 3.90840 3.94543 4.06312 4.15224 4.37852 4.42773 4.51598 4.52559 4.61273 4.65487 4.72106 4.86313 4.91088 4.94529 4.97387 5.05651 5.15726 5.16603 5.24453 5.30154 5.35860 5.53213 5.55309 5.74219 6.09615 6.14188 6.52197 6.95661 7.38981 7.56252 7.73611 8.06960 9.09156 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.005087 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.326403 B = 5502.895713 C = 6313.235265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.055 0.945 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.100 3.900 7 N -0.616 5.616 8 C 0.485 3.515 9 O -0.572 6.572 10 C 0.137 3.863 11 N -0.562 5.562 12 C -0.256 4.256 13 H 0.071 0.929 14 C -0.045 4.045 15 N -0.926 5.926 16 Si 0.970 3.030 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.273 1.273 20 C 0.193 3.807 21 C 0.487 3.513 22 O -0.548 6.548 23 O -0.532 6.532 24 C 0.113 3.887 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.074 0.926 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -1.146 15.328 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.074 0.926 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.022 4.022 7 N -0.352 5.352 8 C 0.272 3.728 9 O -0.450 6.450 10 C 0.007 3.993 11 N -0.280 5.280 12 C -0.385 4.385 13 H 0.089 0.911 14 C -0.240 4.240 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.198 1.198 20 C 0.064 3.936 21 C 0.328 3.672 22 O -0.437 6.437 23 O -0.344 6.344 24 C -0.010 4.010 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.024 -1.154 14.619 18.964 hybrid contribution 0.981 -0.163 -1.048 1.444 sum -11.043 -1.317 13.572 17.546 Atomic orbital electron populations 1.21732 0.93159 1.02674 1.02208 1.21461 0.96879 0.99063 0.94724 0.92615 1.21569 0.94827 1.01268 0.96926 1.21922 0.96474 1.00916 0.97636 1.21977 0.98777 0.97887 0.83575 1.48388 1.06695 1.61364 1.18703 1.22621 0.91653 0.76530 0.81989 1.90609 1.75969 1.45769 1.32654 1.20816 0.88044 1.00590 0.89848 1.43496 1.66889 1.04811 1.12845 1.19364 1.20573 1.00995 0.97560 0.91128 1.25454 0.95632 1.00520 1.02402 1.69985 1.19049 1.35906 1.32339 0.85227 0.76296 0.78239 0.80396 1.21522 1.21991 1.19762 1.20040 0.87526 0.85326 1.00701 1.25035 0.90020 0.78947 0.73190 1.90474 1.63212 1.43161 1.46860 1.84543 1.39037 1.34136 1.76644 1.21662 0.79651 1.00804 0.98867 0.91088 0.93267 0.91528 0.90251 0.90659 0.92575 0.88237 0.89664 0.89804 0.89692 0.89463 0.93854 0.89263 0.91140 0.73718 0.90815 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.20 71.98 0.66 -1.44 16 2 C -0.10 -1.96 2.87 -10.71 -0.03 -1.99 16 3 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.56 5.17 30.62 0.16 -1.40 16 5 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 6 C 0.10 2.07 6.34 86.36 0.55 2.62 16 7 N -0.62 -17.99 2.97 -818.91 -2.43 -20.43 16 8 C 0.49 19.17 7.77 87.66 0.68 19.85 16 9 O -0.57 -27.87 15.84 -3.05 -0.05 -27.92 16 10 C 0.14 5.62 4.46 85.63 0.38 6.01 16 11 N -0.56 -28.72 1.52 -710.67 -1.08 -29.80 16 12 C -0.26 -14.40 9.66 84.03 0.81 -13.59 16 13 H 0.07 3.96 7.92 -2.91 -0.02 3.94 16 14 C -0.05 -2.55 4.86 84.86 0.41 -2.14 16 15 N -0.93 -54.13 9.31 21.65 0.20 -53.93 16 16 Si 0.97 46.68 29.61 68.60 2.03 48.71 16 17 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 C 0.19 9.57 5.49 85.63 0.47 10.04 16 21 C 0.49 23.46 6.54 71.24 0.47 23.92 16 22 O -0.55 -29.49 16.89 21.98 0.37 -29.11 16 23 O -0.53 -21.17 13.42 -51.42 -0.69 -21.86 16 24 C 0.11 2.90 5.72 86.36 0.49 3.40 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.08 1.83 5.93 -2.39 -0.01 1.81 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 3.15 7.62 -2.39 -0.02 3.13 16 35 H 0.09 3.44 7.84 -2.39 -0.02 3.42 16 36 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.09 4.91 6.35 -2.39 -0.02 4.89 16 38 H 0.07 3.13 8.12 -2.39 -0.02 3.11 16 39 H 0.40 12.27 9.10 -74.06 -0.67 11.60 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.89 7.01 -2.38 -0.02 1.88 16 Total: -1.00 -75.16 334.67 3.95 -71.21 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.36 Total: 19.77 kcal Atomic # 6 Polarization: 38.13 SS G_CDS: 5.24 Total: 43.37 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.31 Total: -104.16 kcal Atomic # 8 Polarization: -78.52 SS G_CDS: -0.37 Total: -78.89 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.16 3.95 -71.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828258851.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.724 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds