Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53046 * 109.45977 * 2 1 4 4 C 1.53190 * 109.31321 * 181.37227 * 3 2 1 5 5 N 1.46925 * 108.77670 * 305.36658 * 4 3 2 6 6 C 1.34777 * 120.62970 * 233.58472 * 5 4 3 7 7 O 1.21282 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99582 * 180.02562 * 6 5 4 9 9 N 1.46507 * 109.46624 * 180.02562 * 8 6 5 10 10 C 1.36930 * 120.00237 * 270.00031 * 9 8 6 11 11 H 1.08003 * 119.99868 * 16.21380 * 10 9 8 12 12 C 1.38808 * 120.00277 * 196.22082 * 10 9 8 13 13 N 1.31623 * 120.00217 * 22.13196 * 12 10 9 14 14 Si 1.86800 * 120.00106 * 202.13726 * 12 10 9 15 15 H 1.48494 * 109.47151 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47338 * 120.00131 * 14 12 10 17 17 H 1.48504 * 109.47246 * 239.99873 * 14 12 10 18 18 C 1.46501 * 119.99999 * 90.00023 * 9 8 6 19 19 C 1.50701 * 109.47244 * 84.00772 * 18 9 8 20 20 O 1.20828 * 119.99892 * 359.97438 * 19 18 9 21 21 O 1.34223 * 120.00321 * 179.97438 * 19 18 9 22 22 C 1.46930 * 118.73853 * 53.85861 * 5 4 3 23 23 C 1.53038 * 109.45310 * 120.06409 * 2 1 3 24 24 H 1.09002 * 109.47491 * 60.00055 * 1 2 3 25 25 H 1.09004 * 109.46460 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47128 * 299.99414 * 1 2 3 27 27 H 1.09001 * 109.46217 * 240.03183 * 2 1 3 28 28 H 1.08998 * 109.49293 * 61.42271 * 3 2 1 29 29 H 1.09002 * 109.49377 * 301.32891 * 3 2 1 30 30 H 1.09000 * 109.58238 * 185.57650 * 4 3 2 31 31 H 1.09002 * 109.70217 * 65.22805 * 4 3 2 32 32 H 1.08990 * 109.47257 * 60.00539 * 8 6 5 33 33 H 1.08995 * 109.47152 * 299.99414 * 8 6 5 34 34 H 0.97000 * 120.00147 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47610 * 204.00528 * 18 9 8 36 36 H 1.09002 * 109.47310 * 324.01471 * 18 9 8 37 37 H 0.96702 * 117.00506 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.57972 * 65.92624 * 22 5 4 39 39 H 1.08992 * 109.58315 * 186.34829 * 22 5 4 40 40 H 1.09008 * 109.49393 * 298.57271 * 23 2 1 41 41 H 1.08994 * 109.49824 * 58.66661 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4393 -0.0346 5 7 4.0676 0.6239 1.0823 6 6 4.9617 1.1277 1.9561 7 8 5.3638 2.2643 1.8246 8 6 5.4616 0.2785 3.0963 9 7 6.4166 1.0491 3.8967 10 6 7.7506 1.0168 3.5893 11 1 8.0741 0.6511 2.6260 12 6 8.6871 1.4540 4.5159 13 7 8.3820 1.4845 5.7959 14 14 10.3805 1.9993 3.9463 15 1 10.4715 1.8699 2.4698 16 1 10.6010 3.4157 4.3341 17 1 11.4156 1.1451 4.5823 18 6 5.9444 1.8541 5.0259 19 6 5.8148 0.9800 6.2466 20 8 6.0884 -0.1951 6.1801 21 8 5.3955 1.5066 7.4078 22 6 3.5754 -0.7531 1.2252 23 6 2.0397 -0.7229 1.2489 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8932 -0.5134 -0.8903 28 1 1.6976 1.9497 0.9023 29 1 1.6573 1.9640 -0.8777 30 1 3.9415 2.4596 0.0650 31 1 3.9166 1.0158 -0.9778 32 1 5.9530 -0.6097 2.6995 33 1 4.6211 -0.0202 3.7225 34 1 9.0365 1.7897 6.4435 35 1 6.6578 2.6536 5.2257 36 1 4.9733 2.2857 4.7835 37 1 5.3279 0.9066 8.1631 38 1 3.9188 -1.3531 0.3825 39 1 3.9483 -1.1796 2.1562 40 1 1.6974 -0.1957 2.1395 41 1 1.6570 -1.7434 1.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828276652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = -105.174728 kcal Electronic energy + Delta-G solvation = -23634.611192 eV Core-core repulsion = 20129.238691 eV Total energy + Delta-G solvation = -3505.372501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.77659 -38.69218 -37.39721 -35.42427 -34.33309 -33.68797 -31.61963 -30.94654 -28.65920 -27.69618 -26.32626 -23.43898 -23.29245 -22.21188 -20.57155 -19.98635 -18.61818 -16.90516 -16.79454 -16.45985 -15.65554 -15.03744 -14.99431 -14.89040 -14.62277 -14.29567 -14.09827 -13.64828 -13.45419 -13.31771 -13.02448 -12.80684 -12.49316 -11.95198 -11.89046 -11.73799 -11.36841 -11.26035 -11.03513 -10.95671 -10.82321 -10.61121 -10.52400 -10.41987 -10.17469 -10.01550 -9.93579 -9.43932 -9.04964 -8.50608 -8.27024 -7.06659 -5.91152 -3.22597 3.33800 3.35395 3.41896 3.47487 3.51903 3.87116 4.33674 4.57362 4.63292 4.65536 4.73407 5.06132 5.18394 5.28193 5.32027 5.35592 5.43499 5.49099 5.52731 5.64545 5.69182 5.78615 5.85677 5.92246 6.01830 6.02979 6.09028 6.14208 6.24280 6.33376 6.41904 6.88511 6.93104 7.06495 7.69519 7.83871 7.86030 8.16370 8.89230 9.02281 9.41523 9.69423 10.10227 11.20718 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.004975 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.714653 B = 5626.426216 C = 6483.618878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.110 3.890 5 N -0.625 5.625 6 C 0.484 3.516 7 O -0.521 6.521 8 C 0.135 3.865 9 N -0.545 5.545 10 C -0.247 4.247 11 H 0.078 0.922 12 C 0.002 3.998 13 N -0.905 5.905 14 Si 0.911 3.089 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.292 1.292 18 C 0.193 3.807 19 C 0.479 3.521 20 O -0.517 6.517 21 O -0.542 6.542 22 C 0.110 3.890 23 C -0.130 4.130 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.257 0.743 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.381 0.619 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 -3.387 -8.324 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.013 4.013 5 N -0.363 5.363 6 C 0.270 3.730 7 O -0.395 6.395 8 C 0.004 3.996 9 N -0.262 5.262 10 C -0.376 4.376 11 H 0.096 0.904 12 C -0.195 4.195 13 N -0.550 5.550 14 Si 0.741 3.259 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.219 1.219 18 C 0.063 3.937 19 C 0.319 3.681 20 O -0.403 6.403 21 O -0.352 6.352 22 C -0.014 4.014 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.237 0.763 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.303 -2.762 -8.605 16.919 hybrid contribution 0.882 -0.300 0.330 0.988 sum -13.421 -3.062 -8.275 16.062 Atomic orbital electron populations 1.21827 0.95295 1.01527 1.01693 1.21116 0.95396 0.96205 0.98354 1.21968 0.95825 0.96458 1.02317 1.21441 0.93048 0.97582 0.89233 1.48432 1.44953 1.13841 1.29096 1.23029 0.77301 0.89063 0.83603 1.90628 1.56031 1.19244 1.73563 1.20699 0.94329 0.93386 0.91199 1.43415 1.03426 1.51085 1.28261 1.19214 0.80844 1.39120 0.98393 0.90446 1.24789 0.98400 1.01742 0.94601 1.69874 1.35503 1.49872 0.99745 0.86080 0.83306 0.78281 0.78229 1.20220 1.21371 1.21899 1.20159 0.98614 0.92650 0.82257 1.25261 0.70317 0.88639 0.83911 1.90497 1.45737 1.19138 1.84974 1.84630 1.81153 1.47784 1.21676 1.21748 0.93688 0.83334 1.02622 1.22069 0.95596 1.00762 0.98426 0.92847 0.92780 0.92717 0.91222 0.91608 0.91318 0.89298 0.92469 0.89973 0.91367 0.93284 0.86586 0.93102 0.76347 0.91850 0.89369 0.91401 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.83 2.68 -90.58 -0.24 -1.07 16 3 C -0.13 -1.32 5.36 -26.61 -0.14 -1.46 16 4 C 0.11 1.45 6.43 -3.71 -0.02 1.42 16 5 N -0.63 -9.36 2.97 -172.51 -0.51 -9.87 16 6 C 0.48 9.47 7.77 -10.99 -0.09 9.39 16 7 O -0.52 -12.33 15.84 5.56 0.09 -12.24 16 8 C 0.14 2.77 4.46 -5.19 -0.02 2.75 16 9 N -0.54 -13.73 1.52 -175.99 -0.27 -14.00 16 10 C -0.25 -6.85 9.66 -15.06 -0.15 -7.00 16 11 H 0.08 2.14 7.92 -52.48 -0.42 1.72 16 12 C 0.00 0.06 4.86 -17.43 -0.08 -0.02 16 13 N -0.90 -26.07 9.31 55.49 0.52 -25.55 16 14 Si 0.91 22.33 29.61 -169.99 -5.03 17.29 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 C 0.19 4.70 5.49 -5.19 -0.03 4.67 16 19 C 0.48 11.58 6.54 36.01 0.24 11.82 16 20 O -0.52 -13.95 16.89 -18.75 -0.32 -14.27 16 21 O -0.54 -11.10 13.42 -39.24 -0.53 -11.62 16 22 C 0.11 1.26 6.37 -3.49 -0.02 1.24 16 23 C -0.13 -1.24 5.38 -26.39 -0.14 -1.39 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.62 7.83 -51.93 -0.41 1.22 16 33 H 0.07 1.28 7.63 -51.93 -0.40 0.89 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 35 H 0.12 3.10 6.35 -51.93 -0.33 2.77 16 36 H 0.05 1.12 8.12 -51.93 -0.42 0.70 16 37 H 0.38 6.12 9.10 45.56 0.41 6.54 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 40 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -34.44 334.70 -6.96 -41.40 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.59 Total: 4.24 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: -0.36 Total: 19.57 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.26 Total: -49.42 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.76 Total: -38.13 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.44 -6.96 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828276652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.775 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds