Wall clock time and date at job start Tue Mar 31 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53046 * 109.45977 * 2 1 4 4 C 1.53190 * 109.31321 * 181.37227 * 3 2 1 5 5 N 1.46925 * 108.77670 * 305.36658 * 4 3 2 6 6 C 1.34777 * 120.62970 * 233.58472 * 5 4 3 7 7 O 1.21282 * 119.99672 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99582 * 180.02562 * 6 5 4 9 9 N 1.46507 * 109.46624 * 180.02562 * 8 6 5 10 10 C 1.36930 * 120.00237 * 270.00031 * 9 8 6 11 11 H 1.08003 * 119.99868 * 16.21380 * 10 9 8 12 12 C 1.38808 * 120.00277 * 196.22082 * 10 9 8 13 13 N 1.31623 * 120.00217 * 22.13196 * 12 10 9 14 14 Si 1.86800 * 120.00106 * 202.13726 * 12 10 9 15 15 H 1.48494 * 109.47151 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47338 * 120.00131 * 14 12 10 17 17 H 1.48504 * 109.47246 * 239.99873 * 14 12 10 18 18 C 1.46501 * 119.99999 * 90.00023 * 9 8 6 19 19 C 1.50701 * 109.47244 * 84.00772 * 18 9 8 20 20 O 1.20828 * 119.99892 * 359.97438 * 19 18 9 21 21 O 1.34223 * 120.00321 * 179.97438 * 19 18 9 22 22 C 1.46930 * 118.73853 * 53.85861 * 5 4 3 23 23 C 1.53038 * 109.45310 * 120.06409 * 2 1 3 24 24 H 1.09002 * 109.47491 * 60.00055 * 1 2 3 25 25 H 1.09004 * 109.46460 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47128 * 299.99414 * 1 2 3 27 27 H 1.09001 * 109.46217 * 240.03183 * 2 1 3 28 28 H 1.08998 * 109.49293 * 61.42271 * 3 2 1 29 29 H 1.09002 * 109.49377 * 301.32891 * 3 2 1 30 30 H 1.09000 * 109.58238 * 185.57650 * 4 3 2 31 31 H 1.09002 * 109.70217 * 65.22805 * 4 3 2 32 32 H 1.08990 * 109.47257 * 60.00539 * 8 6 5 33 33 H 1.08995 * 109.47152 * 299.99414 * 8 6 5 34 34 H 0.97000 * 120.00147 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47610 * 204.00528 * 18 9 8 36 36 H 1.09002 * 109.47310 * 324.01471 * 18 9 8 37 37 H 0.96702 * 117.00506 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.57972 * 65.92624 * 22 5 4 39 39 H 1.08992 * 109.58315 * 186.34829 * 22 5 4 40 40 H 1.09008 * 109.49393 * 298.57271 * 23 2 1 41 41 H 1.08994 * 109.49824 * 58.66661 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5714 1.4393 -0.0346 5 7 4.0676 0.6239 1.0823 6 6 4.9617 1.1277 1.9561 7 8 5.3638 2.2643 1.8246 8 6 5.4616 0.2785 3.0963 9 7 6.4166 1.0491 3.8967 10 6 7.7506 1.0168 3.5893 11 1 8.0741 0.6511 2.6260 12 6 8.6871 1.4540 4.5159 13 7 8.3820 1.4845 5.7959 14 14 10.3805 1.9993 3.9463 15 1 10.4715 1.8699 2.4698 16 1 10.6010 3.4157 4.3341 17 1 11.4156 1.1451 4.5823 18 6 5.9444 1.8541 5.0259 19 6 5.8148 0.9800 6.2466 20 8 6.0884 -0.1951 6.1801 21 8 5.3955 1.5066 7.4078 22 6 3.5754 -0.7531 1.2252 23 6 2.0397 -0.7229 1.2489 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8932 -0.5134 -0.8903 28 1 1.6976 1.9497 0.9023 29 1 1.6573 1.9640 -0.8777 30 1 3.9415 2.4596 0.0650 31 1 3.9166 1.0158 -0.9778 32 1 5.9530 -0.6097 2.6995 33 1 4.6211 -0.0202 3.7225 34 1 9.0365 1.7897 6.4435 35 1 6.6578 2.6536 5.2257 36 1 4.9733 2.2857 4.7835 37 1 5.3279 0.9066 8.1631 38 1 3.9188 -1.3531 0.3825 39 1 3.9483 -1.1796 2.1562 40 1 1.6974 -0.1957 2.1395 41 1 1.6570 -1.7434 1.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828276652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:03 Heat of formation + Delta-G solvation = -127.784507 kcal Electronic energy + Delta-G solvation = -23635.591626 eV Core-core repulsion = 20129.238691 eV Total energy + Delta-G solvation = -3506.352935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11781 -40.51008 -38.65146 -37.23257 -36.22417 -34.80447 -33.44870 -32.09866 -30.08411 -29.10805 -28.05086 -24.94557 -24.21647 -23.64461 -22.11315 -21.25637 -19.88487 -18.83405 -18.57897 -17.98822 -17.31670 -16.89504 -16.40396 -16.35995 -16.00802 -15.48526 -15.31623 -15.13674 -15.00560 -14.50999 -14.31507 -14.17778 -13.61052 -13.48540 -13.33686 -12.90273 -12.76511 -12.65692 -12.61132 -12.46595 -12.14469 -12.13089 -12.03833 -11.87449 -11.76920 -11.36410 -11.29949 -11.24804 -10.81220 -10.47296 -9.50221 -9.02901 -8.00809 -5.32687 1.43986 1.47569 1.57887 1.82209 1.94346 2.09377 2.48418 2.73674 3.21843 3.49476 3.75192 3.87275 3.92788 4.06292 4.21948 4.38805 4.42780 4.51729 4.52771 4.61186 4.64580 4.81527 4.82670 4.92098 4.96998 5.01659 5.06206 5.14765 5.16174 5.16560 5.27597 5.41615 5.55637 5.57595 5.75711 6.09739 6.14355 6.52737 6.95877 7.39732 7.56417 7.73805 8.07156 9.09399 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.004975 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.714653 B = 5626.426216 C = 6483.618878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.120 4.120 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.485 3.515 7 O -0.572 6.572 8 C 0.137 3.863 9 N -0.563 5.563 10 C -0.255 4.255 11 H 0.071 0.929 12 C -0.046 4.046 13 N -0.927 5.927 14 Si 0.969 3.031 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.292 1.292 18 C 0.193 3.807 19 C 0.487 3.513 20 O -0.548 6.548 21 O -0.532 6.532 22 C 0.101 3.899 23 C -0.125 4.125 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.404 0.596 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -4.451 -9.502 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.158 4.158 4 C -0.016 4.016 5 N -0.352 5.352 6 C 0.272 3.728 7 O -0.450 6.450 8 C 0.007 3.993 9 N -0.281 5.281 10 C -0.384 4.384 11 H 0.089 0.911 12 C -0.240 4.240 13 N -0.573 5.573 14 Si 0.798 3.202 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.219 1.219 18 C 0.064 3.936 19 C 0.328 3.672 20 O -0.437 6.437 21 O -0.344 6.344 22 C -0.021 4.021 23 C -0.163 4.163 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.263 0.737 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.951 -3.864 -9.805 19.118 hybrid contribution 1.251 -0.006 0.668 1.419 sum -14.699 -3.870 -9.137 17.735 Atomic orbital electron populations 1.21786 0.94024 1.02349 1.01817 1.21120 0.96384 0.94822 0.98439 1.21922 0.93403 0.97960 1.02529 1.21601 0.95061 0.95934 0.89010 1.48395 1.43228 1.15329 1.28201 1.22596 0.77958 0.88151 0.84070 1.90607 1.58321 1.21108 1.74962 1.20817 0.94035 0.93174 0.91307 1.43507 1.03402 1.51974 1.29196 1.19387 0.82370 1.38642 0.98009 0.91128 1.25453 1.01470 1.02342 0.94783 1.69990 1.36144 1.50902 1.00296 0.85181 0.79711 0.77498 0.77797 1.19849 1.21455 1.21923 1.20040 0.98686 0.92143 0.82709 1.25047 0.69588 0.87915 0.84661 1.90477 1.47270 1.20313 1.85674 1.84540 1.80261 1.47953 1.21609 1.22060 0.95302 0.81286 1.03463 1.22055 0.93719 1.02237 0.98339 0.92049 0.91621 0.93343 0.89996 0.93109 0.89360 0.92050 0.90630 0.89480 0.89736 0.93868 0.89248 0.91114 0.73720 0.89743 0.89646 0.92572 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.09 -1.31 2.68 -10.77 -0.03 -1.34 16 3 C -0.12 -2.25 5.36 30.67 0.16 -2.08 16 4 C 0.11 2.68 6.43 86.36 0.56 3.23 16 5 N -0.62 -17.80 2.97 -818.08 -2.43 -20.22 16 6 C 0.49 19.08 7.77 87.66 0.68 19.76 16 7 O -0.57 -27.73 15.84 -3.03 -0.05 -27.78 16 8 C 0.14 5.60 4.46 85.63 0.38 5.98 16 9 N -0.56 -28.72 1.52 -710.70 -1.08 -29.80 16 10 C -0.25 -14.35 9.66 84.03 0.81 -13.54 16 11 H 0.07 3.96 7.92 -2.91 -0.02 3.94 16 12 C -0.05 -2.58 4.86 84.86 0.41 -2.17 16 13 N -0.93 -54.13 9.31 21.65 0.20 -53.93 16 14 Si 0.97 46.62 29.61 68.60 2.03 48.65 16 15 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 18 C 0.19 9.56 5.49 85.63 0.47 10.03 16 19 C 0.49 23.45 6.54 71.24 0.47 23.91 16 20 O -0.55 -29.51 16.89 21.96 0.37 -29.14 16 21 O -0.53 -21.17 13.42 -51.35 -0.69 -21.86 16 22 C 0.10 2.09 6.37 86.51 0.55 2.64 16 23 C -0.13 -2.03 5.38 30.81 0.17 -1.86 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.90 7.01 -2.39 -0.02 1.89 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 3.43 7.83 -2.39 -0.02 3.41 16 33 H 0.08 3.13 7.63 -2.39 -0.02 3.11 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.09 4.91 6.35 -2.39 -0.02 4.89 16 36 H 0.07 3.13 8.12 -2.39 -0.02 3.11 16 37 H 0.40 12.28 9.10 -74.06 -0.67 11.60 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.83 5.93 -2.39 -0.01 1.82 16 40 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.01 334.70 4.01 -71.01 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.36 Total: 19.57 kcal Atomic # 6 Polarization: 38.22 SS G_CDS: 5.29 Total: 43.51 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.30 Total: -103.95 kcal Atomic # 8 Polarization: -78.41 SS G_CDS: -0.37 Total: -78.78 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.01 4.01 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828276652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.778 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds