Wall clock time and date at job start Tue Mar 31 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34777 * 125.64528 * 178.90269 * 5 4 2 7 7 O 1.21584 * 120.00227 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99672 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99917 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47104 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47139 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47147 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37870 * 119.99879 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46824 * 60.00073 * 16 14 12 18 18 H 1.48503 * 109.46819 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47092 * 299.99747 * 16 14 12 20 20 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 21 21 C 1.54915 * 104.83334 * 24.12789 * 20 5 4 22 22 H 1.09001 * 111.00387 * 81.05917 * 21 20 5 23 23 C 1.50698 * 111.00654 * 204.91855 * 21 20 5 24 24 O 1.20825 * 120.00212 * 112.19315 * 23 21 20 25 25 O 1.34233 * 119.99391 * 292.19782 * 23 21 20 26 26 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 27 27 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 28 28 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 29 29 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 30 30 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 31 31 H 0.97001 * 120.00117 * 0.02562 * 8 6 5 32 32 H 1.09005 * 109.47258 * 300.00406 * 9 8 6 33 33 H 1.08999 * 109.47432 * 60.00112 * 9 8 6 34 34 H 1.09001 * 109.47050 * 299.99570 * 10 9 8 35 35 H 1.09000 * 109.47806 * 60.00100 * 10 9 8 36 36 H 1.08992 * 109.47202 * 299.99906 * 11 10 9 37 37 H 1.09000 * 109.46753 * 60.00271 * 11 10 9 38 38 H 0.97003 * 119.99896 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36855 * 142.96531 * 20 5 4 40 40 H 1.08997 * 110.36655 * 265.29403 * 20 5 4 41 41 H 0.96706 * 116.99419 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9913 -2.3848 -1.4894 7 8 3.7172 -2.5585 -2.6611 8 7 5.0428 -3.0255 -0.9411 9 6 5.8549 -3.9315 -1.7569 10 6 6.9749 -4.5241 -0.8994 11 6 7.8228 -5.4710 -1.7513 12 6 8.9265 -6.0542 -0.9069 13 1 9.0140 -5.7776 0.1334 14 6 9.8242 -6.9409 -1.4624 15 7 9.7173 -7.2781 -2.7291 16 14 11.1918 -7.6644 -0.4154 17 1 10.6005 -8.4167 0.7202 18 1 12.0148 -8.5833 -1.2423 19 1 12.0467 -6.5689 0.1080 20 6 3.4632 -1.2499 0.6876 21 6 2.0789 -0.7955 1.2139 22 1 1.4450 -1.6536 1.4375 23 6 2.2255 0.0944 2.4212 24 8 1.9268 1.2630 2.3502 25 8 2.6879 -0.4113 3.5754 26 1 -0.3634 -1.0271 0.0321 27 1 -0.3633 0.5414 0.8736 28 1 -0.3634 0.4859 -0.9055 29 1 1.3129 -1.4758 -1.5775 30 1 2.3715 -0.1026 -1.9988 31 1 5.2617 -2.8867 -0.0064 32 1 5.2274 -4.7359 -2.1409 33 1 6.2886 -3.3796 -2.5908 34 1 7.6026 -3.7200 -0.5153 35 1 6.5411 -5.0763 -0.0658 36 1 7.1950 -6.2750 -2.1351 37 1 8.2568 -4.9192 -2.5851 38 1 10.3492 -7.9017 -3.1200 39 1 3.7959 -2.1427 1.2170 40 1 4.1931 -0.4480 0.7985 41 1 2.7649 0.1983 4.3221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828353958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:42 Heat of formation + Delta-G solvation = -135.797712 kcal Electronic energy + Delta-G solvation = -22094.391218 eV Core-core repulsion = 18587.690805 eV Total energy + Delta-G solvation = -3506.700413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19801 -39.98000 -37.98815 -36.53488 -35.37326 -33.56708 -32.96244 -31.03762 -30.75470 -27.36176 -26.01384 -24.99950 -23.04962 -22.25131 -20.63228 -20.42140 -19.78179 -18.56616 -18.10974 -17.38435 -16.52697 -16.27851 -15.88724 -15.54383 -14.83221 -14.53140 -14.44284 -14.16259 -13.95536 -13.72941 -13.38901 -13.21811 -12.80566 -12.57843 -12.27487 -12.02646 -11.80743 -11.70929 -11.57492 -11.45991 -11.20160 -11.04863 -10.88435 -10.71800 -10.62155 -10.14683 -9.86030 -9.44783 -9.13731 -9.03078 -8.55653 -8.36719 -6.01458 -4.04722 1.66758 2.34634 2.69509 3.27431 3.32056 3.36901 3.38677 3.70668 3.94163 4.13157 4.37215 4.44669 4.64589 4.79063 4.86006 4.95990 5.10945 5.26027 5.32186 5.34203 5.43090 5.57951 5.67105 5.69100 5.80619 5.84125 6.01015 6.02453 6.17822 6.50409 6.61675 6.80252 7.00251 7.03368 7.40468 7.63798 7.76837 7.97281 8.00991 8.38041 8.67024 9.01780 9.59391 11.09810 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.746273 B = 9991.528653 C =10964.662907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.101 0.899 4 C 0.130 3.870 5 N -0.641 5.641 6 C 0.720 3.280 7 O -0.585 6.585 8 N -0.739 5.739 9 C 0.134 3.866 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.116 3.884 21 C -0.096 4.096 22 H 0.125 0.875 23 C 0.493 3.507 24 O -0.507 6.507 25 O -0.512 6.512 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 15.612 11.304 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.381 5.381 6 C 0.422 3.578 7 O -0.462 6.462 8 N -0.393 5.393 9 C 0.011 3.989 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.008 4.008 21 C -0.116 4.116 22 H 0.143 0.857 23 C 0.334 3.666 24 O -0.395 6.395 25 O -0.324 6.324 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.380 15.331 9.839 25.878 hybrid contribution 0.986 0.035 1.601 1.881 sum -17.394 15.366 11.440 25.876 Atomic orbital electron populations 1.21770 0.92870 1.02479 1.02920 1.22262 0.97224 0.99950 0.91247 0.88080 1.21872 0.87117 0.94319 0.95996 1.47501 1.32501 1.48050 1.10069 1.15472 0.79737 0.78358 0.84214 1.90938 1.72531 1.68048 1.14690 1.45430 1.30667 1.48616 1.14592 1.21551 0.91975 0.91443 0.93925 1.21895 0.95396 0.99562 0.98976 1.19023 0.93873 0.93517 0.94908 1.21167 1.12364 1.25936 0.96686 0.92701 1.25027 0.97874 0.96557 0.94981 1.69958 1.37141 1.34287 1.11892 0.86643 0.81994 0.79022 0.80231 1.20248 1.21272 1.20254 1.22061 0.94657 1.01639 0.82470 1.22309 0.99878 0.99013 0.90365 0.85672 1.22959 0.72667 0.87057 0.83886 1.90740 1.46125 1.18221 1.84395 1.84553 1.77970 1.47744 1.22137 0.92018 0.91822 0.91426 0.90852 0.90903 0.77294 0.91821 0.91830 0.92761 0.92744 0.96216 0.96228 0.92858 0.89280 0.90863 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.13 37.16 0.34 -0.50 16 2 C -0.09 -0.64 2.68 -88.78 -0.24 -0.87 16 3 H 0.10 0.81 7.39 -51.93 -0.38 0.42 16 4 C 0.13 1.25 6.46 -3.06 -0.02 1.23 16 5 N -0.64 -7.35 3.33 -176.23 -0.59 -7.94 16 6 C 0.72 11.29 8.49 -86.92 -0.74 10.56 16 7 O -0.58 -11.64 16.67 5.29 0.09 -11.55 16 8 N -0.74 -10.90 5.52 -65.23 -0.36 -11.26 16 9 C 0.13 2.39 5.67 -4.05 -0.02 2.36 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.12 0.94 6.03 -2.53 -0.02 0.92 16 21 C -0.10 -0.65 2.99 -89.62 -0.27 -0.92 16 22 H 0.13 0.71 8.04 -51.93 -0.42 0.29 16 23 C 0.49 3.61 7.64 36.00 0.28 3.89 16 24 O -0.51 -5.10 16.47 -18.75 -0.31 -5.41 16 25 O -0.51 -2.76 13.42 -39.26 -0.53 -3.29 16 26 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 4.70 6.95 -40.82 -0.28 4.42 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 0.63 7.30 -51.93 -0.38 0.25 16 40 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 41 H 0.41 0.61 9.10 45.56 0.41 1.03 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -35.36 345.55 -7.79 -43.15 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.64 Total: -0.56 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.38 Total: 1.32 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.21 Total: -45.27 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.75 Total: -20.25 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.36 -7.79 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.649 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds