Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34777 * 125.64528 * 178.90269 * 5 4 2 7 7 O 1.21584 * 120.00227 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99672 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99917 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47104 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47139 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47147 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37870 * 119.99879 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46824 * 60.00073 * 16 14 12 18 18 H 1.48503 * 109.46819 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47092 * 299.99747 * 16 14 12 20 20 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 21 21 C 1.54915 * 104.83334 * 24.12789 * 20 5 4 22 22 H 1.09001 * 111.00387 * 81.05917 * 21 20 5 23 23 C 1.50698 * 111.00654 * 204.91855 * 21 20 5 24 24 O 1.20825 * 120.00212 * 112.19315 * 23 21 20 25 25 O 1.34233 * 119.99391 * 292.19782 * 23 21 20 26 26 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 27 27 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 28 28 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 29 29 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 30 30 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 31 31 H 0.97001 * 120.00117 * 0.02562 * 8 6 5 32 32 H 1.09005 * 109.47258 * 300.00406 * 9 8 6 33 33 H 1.08999 * 109.47432 * 60.00112 * 9 8 6 34 34 H 1.09001 * 109.47050 * 299.99570 * 10 9 8 35 35 H 1.09000 * 109.47806 * 60.00100 * 10 9 8 36 36 H 1.08992 * 109.47202 * 299.99906 * 11 10 9 37 37 H 1.09000 * 109.46753 * 60.00271 * 11 10 9 38 38 H 0.97003 * 119.99896 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36855 * 142.96531 * 20 5 4 40 40 H 1.08997 * 110.36655 * 265.29403 * 20 5 4 41 41 H 0.96706 * 116.99419 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9913 -2.3848 -1.4894 7 8 3.7172 -2.5585 -2.6611 8 7 5.0428 -3.0255 -0.9411 9 6 5.8549 -3.9315 -1.7569 10 6 6.9749 -4.5241 -0.8994 11 6 7.8228 -5.4710 -1.7513 12 6 8.9265 -6.0542 -0.9069 13 1 9.0140 -5.7776 0.1334 14 6 9.8242 -6.9409 -1.4624 15 7 9.7173 -7.2781 -2.7291 16 14 11.1918 -7.6644 -0.4154 17 1 10.6005 -8.4167 0.7202 18 1 12.0148 -8.5833 -1.2423 19 1 12.0467 -6.5689 0.1080 20 6 3.4632 -1.2499 0.6876 21 6 2.0789 -0.7955 1.2139 22 1 1.4450 -1.6536 1.4375 23 6 2.2255 0.0944 2.4212 24 8 1.9268 1.2630 2.3502 25 8 2.6879 -0.4113 3.5754 26 1 -0.3634 -1.0271 0.0321 27 1 -0.3633 0.5414 0.8736 28 1 -0.3634 0.4859 -0.9055 29 1 1.3129 -1.4758 -1.5775 30 1 2.3715 -0.1026 -1.9988 31 1 5.2617 -2.8867 -0.0064 32 1 5.2274 -4.7359 -2.1409 33 1 6.2886 -3.3796 -2.5908 34 1 7.6026 -3.7200 -0.5153 35 1 6.5411 -5.0763 -0.0658 36 1 7.1950 -6.2750 -2.1351 37 1 8.2568 -4.9192 -2.5851 38 1 10.3492 -7.9017 -3.1200 39 1 3.7959 -2.1427 1.2170 40 1 4.1931 -0.4480 0.7985 41 1 2.7649 0.1983 4.3221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828353958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = -161.017781 kcal Electronic energy + Delta-G solvation = -22095.484842 eV Core-core repulsion = 18587.690805 eV Total energy + Delta-G solvation = -3507.794038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90543 -40.93927 -38.87607 -37.10151 -36.91612 -35.22997 -34.12592 -32.71772 -31.41299 -28.84141 -27.14268 -25.82280 -24.69031 -22.97982 -22.28129 -21.16294 -20.83650 -19.23682 -19.01867 -18.49372 -18.03744 -17.36506 -16.91362 -16.60387 -16.42779 -15.91990 -15.44114 -15.33949 -14.85737 -14.42812 -14.26218 -14.18919 -14.02180 -13.75977 -13.56232 -13.36149 -13.12567 -12.70111 -12.56348 -12.53934 -12.38830 -12.16782 -12.07452 -11.77543 -11.75999 -11.65118 -11.55987 -11.30448 -11.14888 -10.52981 -10.29359 -9.60790 -8.17641 -6.29187 1.09478 1.42632 1.46123 1.46136 1.54048 2.00291 2.10306 2.43420 2.95022 3.16155 3.16476 3.37210 3.81301 4.05042 4.13776 4.17076 4.24503 4.35046 4.43112 4.51385 4.57344 4.64552 4.71874 4.81229 4.96277 4.97297 4.99468 5.09482 5.18355 5.24347 5.33195 5.45206 5.54854 5.60549 5.73200 5.86121 5.93296 6.24210 6.86691 6.90441 6.97975 7.40361 7.47469 8.94348 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025225 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.746273 B = 9991.528653 C =10964.662907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.094 0.906 4 C 0.126 3.874 5 N -0.636 5.636 6 C 0.717 3.283 7 O -0.634 6.634 8 N -0.727 5.727 9 C 0.149 3.851 10 C -0.100 4.100 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.111 3.889 21 C -0.090 4.090 22 H 0.143 0.857 23 C 0.502 3.498 24 O -0.537 6.537 25 O -0.508 6.508 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.410 0.590 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.070 0.930 36 H -0.007 1.007 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.430 16.055 14.134 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.003 3.997 5 N -0.374 5.374 6 C 0.418 3.582 7 O -0.515 6.515 8 N -0.383 5.383 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.189 1.189 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.012 4.012 21 C -0.110 4.110 22 H 0.161 0.839 23 C 0.345 3.655 24 O -0.427 6.427 25 O -0.322 6.322 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -18.601 15.813 12.764 27.549 hybrid contribution 1.012 -0.063 0.742 1.256 sum -17.590 15.749 13.506 27.200 Atomic orbital electron populations 1.21752 0.91642 1.03110 1.03172 1.22157 0.98070 0.99104 0.90340 0.88758 1.22017 0.86463 0.94151 0.97032 1.47450 1.31987 1.46603 1.11364 1.15587 0.79968 0.78744 0.83865 1.90903 1.73813 1.69768 1.17039 1.45061 1.30199 1.47985 1.15047 1.21119 0.91570 0.91319 0.93550 1.21590 0.95113 0.98794 0.98290 1.18936 0.93978 0.93631 0.94835 1.21663 1.12859 1.25902 0.97495 0.91425 1.26025 1.00758 0.97106 0.96226 1.70111 1.38395 1.35162 1.13946 0.85474 0.78569 0.78352 0.78481 1.18945 1.21278 1.19027 1.22288 0.95791 1.02719 0.80375 1.22283 0.99220 0.99375 0.90073 0.83932 1.22868 0.71953 0.86374 0.84313 1.90744 1.47596 1.19435 1.84950 1.84512 1.77197 1.48200 1.22249 0.91175 0.91780 0.90999 0.90952 0.91803 0.75310 0.93252 0.93475 0.91382 0.91174 0.98867 0.98996 0.92831 0.87649 0.90145 0.70690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.13 71.98 0.66 -0.73 16 2 C -0.08 -1.00 2.68 -9.60 -0.03 -1.03 16 3 H 0.09 1.39 7.39 -2.39 -0.02 1.37 16 4 C 0.13 2.31 6.46 86.73 0.56 2.87 16 5 N -0.64 -13.78 3.33 -829.75 -2.76 -16.54 16 6 C 0.72 22.12 8.49 179.05 1.52 23.64 16 7 O -0.63 -25.73 16.67 -3.98 -0.07 -25.79 16 8 N -0.73 -20.64 5.52 -478.55 -2.64 -23.27 16 9 C 0.15 5.32 5.67 86.38 0.49 5.81 16 10 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 16 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.11 1.52 6.03 86.86 0.52 2.05 16 21 C -0.09 -1.00 2.99 -10.14 -0.03 -1.03 16 22 H 0.14 1.14 8.04 -2.39 -0.02 1.12 16 23 C 0.50 6.12 7.64 71.24 0.54 6.66 16 24 O -0.54 -9.83 16.47 21.97 0.36 -9.47 16 25 O -0.51 -3.94 13.42 -51.44 -0.69 -4.63 16 26 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.41 8.79 6.95 -92.71 -0.64 8.14 16 32 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.11 1.14 7.30 -2.39 -0.02 1.12 16 40 H 0.08 1.04 8.03 -2.39 -0.02 1.02 16 41 H 0.43 0.04 9.10 -74.05 -0.67 -0.64 16 Total: -1.00 -77.33 345.55 1.48 -75.85 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.28 Total: 8.72 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.25 Total: 6.51 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -5.11 Total: -96.71 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.40 Total: -39.89 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.33 1.48 -75.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.171 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds