Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64231 * 2 1 4 4 C 1.54330 * 110.71653 * 123.14212 * 2 1 3 5 5 N 1.47019 * 107.26632 * 140.73422 * 4 2 1 6 6 C 1.34783 * 125.64253 * 181.02121 * 5 4 2 7 7 O 1.21585 * 119.99913 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99768 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99872 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47425 * 108.70575 * 1.28500 * 5 4 2 21 21 C 1.55126 * 104.72098 * 335.55168 * 20 5 4 22 22 H 1.08996 * 111.22950 * 279.17785 * 21 20 5 23 23 C 1.50700 * 110.90341 * 155.27499 * 21 20 5 24 24 O 1.20829 * 120.00092 * 247.98124 * 23 21 20 25 25 O 1.34234 * 120.00140 * 67.97281 * 23 21 20 26 26 H 1.08995 * 109.47398 * 298.31281 * 1 2 3 27 27 H 1.09004 * 109.46794 * 58.30989 * 1 2 3 28 28 H 1.08997 * 109.47732 * 178.31250 * 1 2 3 29 29 H 1.09001 * 109.88119 * 21.31493 * 4 2 1 30 30 H 1.09000 * 109.87772 * 260.14999 * 4 2 1 31 31 H 0.97005 * 119.99680 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.46813 * 60.00258 * 9 8 6 33 33 H 1.08992 * 109.47397 * 300.00319 * 9 8 6 34 34 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 38 38 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.36359 * 94.48607 * 20 5 4 40 40 H 1.09006 * 110.36510 * 216.80236 * 20 5 4 41 41 H 0.96704 * 117.00085 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7892 1.2087 5 7 3.2470 -1.5461 0.7427 6 6 3.9956 -2.3768 1.4952 7 8 3.7202 -2.5500 2.6667 8 7 5.0487 -3.0162 0.9487 9 6 5.8627 -3.9186 1.7668 10 6 6.9845 -4.5103 0.9110 11 6 7.8343 -5.4533 1.7651 12 6 8.9395 -6.0357 0.9225 13 1 9.0274 -5.7605 -0.1182 14 6 9.8393 -6.9191 1.4802 15 7 9.7326 -7.2539 2.7476 16 14 11.2089 -7.6417 0.4354 17 1 11.1098 -7.1094 -0.9474 18 1 12.5238 -7.2684 1.0160 19 1 11.0821 -9.1209 0.4072 20 6 3.4706 -1.2413 -0.6823 21 6 2.0827 -0.7949 -1.2124 22 1 1.4510 -1.6542 -1.4370 23 6 2.2291 0.0946 -2.4200 24 8 1.9276 1.2625 -2.3503 25 8 2.6947 -0.4106 -3.5733 26 1 -0.3634 0.4874 0.9047 27 1 -0.3633 0.5399 -0.8745 28 1 -0.3634 -1.0271 -0.0303 29 1 1.3139 -1.4754 1.5781 30 1 2.3711 -0.0992 1.9992 31 1 5.2681 -2.8782 0.0139 32 1 5.2369 -4.7236 2.1521 33 1 6.2947 -3.3638 2.5996 34 1 6.5521 -5.0652 0.0783 35 1 7.6104 -3.7056 0.5253 36 1 8.2666 -4.8987 2.5980 37 1 7.2082 -6.2580 2.1505 38 1 10.3658 -7.8751 3.1401 39 1 4.1970 -0.4356 -0.7883 40 1 3.8102 -2.1314 -1.2119 41 1 2.7707 0.1986 -4.3205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828353959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = -135.825274 kcal Electronic energy + Delta-G solvation = -22093.861924 eV Core-core repulsion = 18587.160315 eV Total energy + Delta-G solvation = -3506.701609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19324 -39.97894 -37.98388 -36.53297 -35.37358 -33.56753 -32.96296 -31.03877 -30.74436 -27.36264 -26.01548 -25.00094 -23.05178 -22.25231 -20.63341 -20.41916 -19.77810 -18.56589 -18.10871 -17.38153 -16.52643 -16.28170 -15.88895 -15.54343 -14.83233 -14.53051 -14.43879 -14.16246 -13.95795 -13.72699 -13.38631 -13.21621 -12.80733 -12.57783 -12.29217 -12.02569 -11.79976 -11.71121 -11.57696 -11.45851 -11.20043 -11.04695 -10.92252 -10.72483 -10.56901 -10.14642 -9.86785 -9.45452 -9.11331 -9.03133 -8.55680 -8.37495 -6.01963 -4.04979 1.66812 2.34722 2.69550 3.27415 3.29831 3.37361 3.40748 3.70833 3.93677 4.12998 4.37280 4.44536 4.64347 4.79221 4.86070 4.96138 5.10830 5.26000 5.32245 5.33954 5.43178 5.57819 5.67082 5.69131 5.80574 5.84122 6.01085 6.02560 6.17778 6.50370 6.61595 6.80202 7.00202 7.03319 7.40540 7.64105 7.76599 7.97083 8.00966 8.37909 8.67009 9.01984 9.59252 11.09390 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.777870 B = 9992.011515 C =10965.316491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.101 0.899 4 C 0.130 3.870 5 N -0.641 5.641 6 C 0.720 3.280 7 O -0.585 6.585 8 N -0.739 5.739 9 C 0.134 3.866 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.116 3.884 21 C -0.095 4.095 22 H 0.126 0.874 23 C 0.493 3.507 24 O -0.508 6.508 25 O -0.512 6.512 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.260 15.578 -11.363 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.381 5.381 6 C 0.422 3.578 7 O -0.462 6.462 8 N -0.393 5.393 9 C 0.011 3.989 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.008 4.008 21 C -0.115 4.115 22 H 0.143 0.857 23 C 0.334 3.666 24 O -0.395 6.395 25 O -0.324 6.324 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.419 15.303 -9.908 25.915 hybrid contribution 0.994 0.029 -1.573 1.861 sum -17.425 15.332 -11.481 25.895 Atomic orbital electron populations 1.21768 0.92873 1.02480 1.02918 1.22259 0.97218 0.99960 0.91274 0.88103 1.21880 0.87054 0.94355 0.96000 1.47508 1.32194 1.48270 1.10174 1.15475 0.79736 0.78373 0.84202 1.90938 1.72555 1.68002 1.14713 1.45433 1.30508 1.48807 1.14561 1.21552 0.91932 0.91526 0.93881 1.21893 0.95375 0.99563 0.98987 1.19032 0.93891 0.93569 0.94911 1.21239 1.12103 1.25929 0.96704 0.92599 1.25035 0.97912 0.96583 0.94980 1.69980 1.37004 1.34472 1.11807 0.86527 0.82001 0.78909 0.80497 1.19763 1.21014 1.21003 1.22106 0.94593 1.01642 0.82478 1.22341 0.99818 0.99039 0.90320 0.85651 1.22972 0.72680 0.87048 0.83894 1.90741 1.46122 1.18258 1.84374 1.84552 1.77869 1.47807 1.22178 0.91422 0.91824 0.92024 0.90822 0.90920 0.77293 0.91818 0.91836 0.92740 0.92762 0.96221 0.96205 0.92979 0.90836 0.89281 0.72771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.14 37.16 0.34 -0.50 16 2 C -0.09 -0.64 2.67 -88.78 -0.24 -0.87 16 3 H 0.10 0.80 7.39 -51.93 -0.38 0.42 16 4 C 0.13 1.25 6.46 -3.06 -0.02 1.23 16 5 N -0.64 -7.35 3.32 -176.09 -0.59 -7.93 16 6 C 0.72 11.29 8.49 -86.91 -0.74 10.55 16 7 O -0.58 -11.64 16.67 5.29 0.09 -11.55 16 8 N -0.74 -10.89 5.52 -65.23 -0.36 -11.25 16 9 C 0.13 2.39 5.67 -4.04 -0.02 2.36 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.12 0.94 6.04 -2.41 -0.01 0.92 16 21 C -0.10 -0.65 3.01 -89.51 -0.27 -0.92 16 22 H 0.13 0.71 8.05 -51.93 -0.42 0.29 16 23 C 0.49 3.61 7.64 36.01 0.28 3.89 16 24 O -0.51 -5.10 16.47 -18.75 -0.31 -5.41 16 25 O -0.51 -2.76 13.42 -39.27 -0.53 -3.29 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 29 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 4.70 6.95 -40.82 -0.28 4.41 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 40 H 0.09 0.63 7.29 -51.93 -0.38 0.25 16 41 H 0.41 0.61 9.10 45.56 0.41 1.03 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -35.40 345.57 -7.79 -43.18 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.64 Total: -0.63 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.38 Total: 1.34 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.21 Total: -45.24 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.75 Total: -20.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.40 -7.79 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.642 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds