Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64231 * 2 1 4 4 C 1.54330 * 110.71653 * 123.14212 * 2 1 3 5 5 N 1.47019 * 107.26632 * 140.73422 * 4 2 1 6 6 C 1.34783 * 125.64253 * 181.02121 * 5 4 2 7 7 O 1.21585 * 119.99913 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99768 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99872 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47425 * 108.70575 * 1.28500 * 5 4 2 21 21 C 1.55126 * 104.72098 * 335.55168 * 20 5 4 22 22 H 1.08996 * 111.22950 * 279.17785 * 21 20 5 23 23 C 1.50700 * 110.90341 * 155.27499 * 21 20 5 24 24 O 1.20829 * 120.00092 * 247.98124 * 23 21 20 25 25 O 1.34234 * 120.00140 * 67.97281 * 23 21 20 26 26 H 1.08995 * 109.47398 * 298.31281 * 1 2 3 27 27 H 1.09004 * 109.46794 * 58.30989 * 1 2 3 28 28 H 1.08997 * 109.47732 * 178.31250 * 1 2 3 29 29 H 1.09001 * 109.88119 * 21.31493 * 4 2 1 30 30 H 1.09000 * 109.87772 * 260.14999 * 4 2 1 31 31 H 0.97005 * 119.99680 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.46813 * 60.00258 * 9 8 6 33 33 H 1.08992 * 109.47397 * 300.00319 * 9 8 6 34 34 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 38 38 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 39 39 H 1.08996 * 110.36359 * 94.48607 * 20 5 4 40 40 H 1.09006 * 110.36510 * 216.80236 * 20 5 4 41 41 H 0.96704 * 117.00085 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7892 1.2087 5 7 3.2470 -1.5461 0.7427 6 6 3.9956 -2.3768 1.4952 7 8 3.7202 -2.5500 2.6667 8 7 5.0487 -3.0162 0.9487 9 6 5.8627 -3.9186 1.7668 10 6 6.9845 -4.5103 0.9110 11 6 7.8343 -5.4533 1.7651 12 6 8.9395 -6.0357 0.9225 13 1 9.0274 -5.7605 -0.1182 14 6 9.8393 -6.9191 1.4802 15 7 9.7326 -7.2539 2.7476 16 14 11.2089 -7.6417 0.4354 17 1 11.1098 -7.1094 -0.9474 18 1 12.5238 -7.2684 1.0160 19 1 11.0821 -9.1209 0.4072 20 6 3.4706 -1.2413 -0.6823 21 6 2.0827 -0.7949 -1.2124 22 1 1.4510 -1.6542 -1.4370 23 6 2.2291 0.0946 -2.4200 24 8 1.9276 1.2625 -2.3503 25 8 2.6947 -0.4106 -3.5733 26 1 -0.3634 0.4874 0.9047 27 1 -0.3633 0.5399 -0.8745 28 1 -0.3634 -1.0271 -0.0303 29 1 1.3139 -1.4754 1.5781 30 1 2.3711 -0.0992 1.9992 31 1 5.2681 -2.8782 0.0139 32 1 5.2369 -4.7236 2.1521 33 1 6.2947 -3.3638 2.5996 34 1 6.5521 -5.0652 0.0783 35 1 7.6104 -3.7056 0.5253 36 1 8.2666 -4.8987 2.5980 37 1 7.2082 -6.2580 2.1505 38 1 10.3658 -7.8751 3.1401 39 1 4.1970 -0.4356 -0.7883 40 1 3.8102 -2.1314 -1.2119 41 1 2.7707 0.1986 -4.3205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828353959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -161.068060 kcal Electronic energy + Delta-G solvation = -22094.956533 eV Core-core repulsion = 18587.160315 eV Total energy + Delta-G solvation = -3507.796218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90062 -40.93793 -38.87120 -37.10009 -36.91560 -35.23076 -34.12455 -32.71786 -31.40198 -28.84283 -27.14306 -25.82483 -24.69188 -22.98013 -22.28157 -21.16367 -20.82859 -19.23625 -19.01757 -18.49942 -18.03515 -17.36350 -16.91379 -16.60221 -16.42200 -15.91822 -15.44187 -15.33903 -14.86054 -14.42577 -14.28005 -14.18901 -14.01971 -13.75114 -13.55842 -13.36518 -13.12513 -12.76572 -12.56263 -12.53459 -12.32318 -12.16988 -12.07307 -11.77411 -11.75990 -11.66070 -11.56137 -11.29468 -11.12820 -10.54536 -10.29335 -9.60746 -8.18069 -6.29310 1.09529 1.42810 1.43183 1.46247 1.56580 2.00469 2.10274 2.43209 2.95202 3.15992 3.16353 3.36863 3.81362 4.04800 4.13970 4.17151 4.24562 4.35119 4.43260 4.51353 4.57419 4.64437 4.71990 4.81284 4.96340 4.97312 4.99479 5.09528 5.18402 5.24488 5.33213 5.45359 5.55144 5.60648 5.73138 5.86202 5.93309 6.24218 6.86877 6.90588 6.98042 7.40279 7.47533 8.94350 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.002802 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.777870 B = 9992.011515 C =10965.316491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 H 0.094 0.906 4 C 0.126 3.874 5 N -0.636 5.636 6 C 0.717 3.283 7 O -0.634 6.634 8 N -0.727 5.727 9 C 0.149 3.851 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.257 1.257 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.111 3.889 21 C -0.089 4.089 22 H 0.143 0.857 23 C 0.502 3.498 24 O -0.538 6.538 25 O -0.508 6.508 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.410 0.590 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.068 0.932 36 H -0.008 1.008 37 H -0.007 1.007 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 16.017 -14.178 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.004 3.996 5 N -0.374 5.374 6 C 0.418 3.582 7 O -0.515 6.515 8 N -0.383 5.383 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.012 4.012 21 C -0.109 4.109 22 H 0.161 0.839 23 C 0.345 3.655 24 O -0.427 6.427 25 O -0.322 6.322 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.010 0.990 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -18.643 15.780 -12.816 27.583 hybrid contribution 1.022 -0.069 -0.718 1.251 sum -17.622 15.711 -13.534 27.212 Atomic orbital electron populations 1.21750 0.91647 1.03111 1.03167 1.22155 0.98062 0.99116 0.90365 0.88782 1.22024 0.86399 0.94184 0.97035 1.47456 1.31685 1.46831 1.11454 1.15590 0.79966 0.78758 0.83854 1.90903 1.73834 1.69725 1.17062 1.45064 1.30038 1.48180 1.15013 1.21120 0.91531 0.91391 0.93514 1.21588 0.95088 0.98814 0.98291 1.18945 0.94000 0.93661 0.94845 1.21713 1.12603 1.25888 0.97441 0.91441 1.26029 1.00799 0.97140 0.96221 1.70125 1.38298 1.35367 1.13848 0.85364 0.78299 0.77952 0.79211 1.18087 1.20701 1.20623 1.22333 0.95727 1.02716 0.80391 1.22316 0.99151 0.99406 0.90026 0.83911 1.22882 0.71967 0.86365 0.84320 1.90745 1.47593 1.19473 1.84931 1.84511 1.77095 1.48261 1.22293 0.90996 0.91786 0.91179 0.90920 0.91825 0.75311 0.93252 0.93474 0.91176 0.91382 0.98978 0.98849 0.92848 0.90119 0.87651 0.70694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.14 71.98 0.66 -0.73 16 2 C -0.08 -1.00 2.67 -9.60 -0.03 -1.03 16 3 H 0.09 1.39 7.39 -2.39 -0.02 1.37 16 4 C 0.13 2.32 6.46 86.73 0.56 2.88 16 5 N -0.64 -13.77 3.32 -829.30 -2.76 -16.53 16 6 C 0.72 22.11 8.49 179.05 1.52 23.63 16 7 O -0.63 -25.71 16.67 -3.98 -0.07 -25.78 16 8 N -0.73 -20.62 5.52 -478.54 -2.64 -23.26 16 9 C 0.15 5.32 5.67 86.38 0.49 5.81 16 10 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 11 C 0.02 1.20 4.97 29.85 0.15 1.35 16 12 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 16 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 C 0.11 1.52 6.04 86.93 0.52 2.05 16 21 C -0.09 -0.99 3.01 -10.07 -0.03 -1.02 16 22 H 0.14 1.14 8.05 -2.39 -0.02 1.12 16 23 C 0.50 6.11 7.64 71.24 0.54 6.66 16 24 O -0.54 -9.83 16.47 21.95 0.36 -9.47 16 25 O -0.51 -3.94 13.42 -51.46 -0.69 -4.63 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.41 8.78 6.95 -92.70 -0.64 8.14 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.08 1.04 8.03 -2.39 -0.02 1.03 16 40 H 0.11 1.14 7.29 -2.38 -0.02 1.12 16 41 H 0.43 0.04 9.10 -74.05 -0.67 -0.63 16 Total: -1.00 -77.36 345.57 1.49 -75.87 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.28 Total: 8.49 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.25 Total: 6.59 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -5.11 Total: -96.62 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.40 Total: -39.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.36 1.49 -75.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.196 kcal (2) G-P(sol) polarization free energy of solvation -77.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds