Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.28776 * 2 1 4 4 C 1.54005 * 110.32643 * 122.13818 * 2 1 3 5 5 N 1.47485 * 107.08612 * 120.30316 * 4 2 1 6 6 C 1.34769 * 127.03606 * 154.51938 * 5 4 2 7 7 O 1.21590 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00506 * 179.72041 * 8 6 5 10 10 C 1.53000 * 109.47500 * 180.27418 * 9 8 6 11 11 C 1.53000 * 109.47287 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46917 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00369 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47205 * 60.00335 * 16 14 12 18 18 H 1.48503 * 109.47193 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47260 * 300.00118 * 16 14 12 20 20 C 1.48115 * 105.92748 * 334.77613 * 5 4 2 21 21 C 1.54590 * 103.42772 * 39.02706 * 20 5 4 22 22 H 1.09002 * 110.57328 * 81.16586 * 21 20 5 23 23 C 1.50701 * 110.83650 * 204.44122 * 21 20 5 24 24 O 1.20823 * 119.99933 * 17.89990 * 23 21 20 25 25 O 1.34224 * 120.00206 * 197.89000 * 23 21 20 26 26 H 1.08993 * 109.47447 * 293.90901 * 1 2 3 27 27 H 1.09000 * 109.47228 * 53.91254 * 1 2 3 28 28 H 1.09007 * 109.47160 * 173.91194 * 1 2 3 29 29 H 1.09000 * 109.91238 * 0.93849 * 4 2 1 30 30 H 1.09005 * 109.91022 * 239.65996 * 4 2 1 31 31 H 0.97006 * 119.99321 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.47482 * 300.27556 * 9 8 6 33 33 H 1.09005 * 109.46807 * 60.27614 * 9 8 6 34 34 H 1.09003 * 109.46866 * 300.00515 * 10 9 8 35 35 H 1.08997 * 109.47169 * 60.00008 * 10 9 8 36 36 H 1.08998 * 109.47219 * 299.99546 * 11 10 9 37 37 H 1.08997 * 109.47170 * 59.99812 * 11 10 9 38 38 H 0.97007 * 119.99802 * 179.97438 * 15 14 12 39 39 H 1.09001 * 110.65794 * 157.51392 * 20 5 4 40 40 H 1.09003 * 110.66536 * 280.61850 * 20 5 4 41 41 H 0.96698 * 117.00048 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8825 -1.8836 0.7102 6 6 3.8946 -2.5069 1.3453 7 8 4.2170 -2.1578 2.4645 8 7 4.5496 -3.5174 0.7399 9 6 5.6537 -4.1909 1.4278 10 6 6.2243 -5.2868 0.5253 11 6 7.3771 -5.9906 1.2440 12 6 7.9385 -7.0704 0.3552 13 1 7.5158 -7.2376 -0.6244 14 6 8.9927 -7.8441 0.7923 15 7 9.5079 -7.6402 1.9851 16 14 9.6891 -9.1821 -0.3096 17 1 10.1879 -8.5756 -1.5700 18 1 10.8080 -9.8654 0.3880 19 1 8.6250 -10.1694 -0.6226 20 6 2.3677 -2.1742 -0.6478 21 6 2.0693 -0.7720 -1.2263 22 1 2.9825 -0.3104 -1.6020 23 6 1.0245 -0.8503 -2.3095 24 8 0.3175 -1.8261 -2.3975 25 8 0.8790 0.1642 -3.1763 26 1 -0.3634 0.4165 0.9394 27 1 -0.3634 0.6053 -0.8305 28 1 -0.3634 -1.0219 -0.1090 29 1 1.2330 -1.1570 1.8101 30 1 2.6794 -0.1088 1.8359 31 1 4.2921 -3.7962 -0.1528 32 1 6.4349 -3.4662 1.6575 33 1 5.2877 -4.6362 2.3530 34 1 5.4431 -6.0115 0.2956 35 1 6.5902 -4.8416 -0.3999 36 1 8.1583 -5.2661 1.4739 37 1 7.0107 -6.4359 2.1690 38 1 10.2493 -8.1849 2.2928 39 1 3.1244 -2.6828 -1.2452 40 1 1.4553 -2.7682 -0.5944 41 1 0.1954 0.0685 -3.8534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828353960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = -132.629071 kcal Electronic energy + Delta-G solvation = -22200.269694 eV Core-core repulsion = 18693.706684 eV Total energy + Delta-G solvation = -3506.563011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32267 -39.92055 -37.99379 -36.50353 -35.36092 -33.55404 -32.96521 -31.03868 -30.49138 -27.38882 -26.11486 -25.20049 -23.12786 -22.27864 -20.64728 -20.25019 -19.78184 -18.46509 -18.14653 -17.25014 -16.41740 -16.21451 -15.80002 -15.63459 -15.21498 -14.54992 -14.50305 -14.14684 -13.90907 -13.58607 -13.22993 -13.13338 -12.91843 -12.70110 -12.27048 -11.98512 -11.79407 -11.71880 -11.61989 -11.46464 -11.25944 -10.88118 -10.85731 -10.71118 -10.61466 -10.15596 -9.85200 -9.44133 -9.13038 -9.05409 -8.56372 -8.35988 -6.00814 -4.03992 1.71755 2.31160 2.72365 3.27665 3.32750 3.37484 3.39420 3.86675 3.91255 4.11737 4.32401 4.45270 4.61956 4.79521 4.83633 4.96284 5.11937 5.20360 5.30928 5.34841 5.46347 5.53764 5.57095 5.68086 5.79286 5.81746 5.96790 6.03805 6.18673 6.51416 6.62542 6.81751 7.01493 7.05821 7.42729 7.64522 7.77577 7.97985 8.02535 8.38847 8.68155 9.02494 9.60070 11.10450 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.002787 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.624901 B =10044.562791 C =10892.975446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.089 4.089 3 H 0.099 0.901 4 C 0.129 3.871 5 N -0.643 5.643 6 C 0.724 3.276 7 O -0.586 6.586 8 N -0.739 5.739 9 C 0.134 3.866 10 C -0.120 4.120 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.116 3.884 21 C -0.098 4.098 22 H 0.119 0.881 23 C 0.497 3.503 24 O -0.509 6.509 25 O -0.514 6.514 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 18.012 -8.781 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.109 4.109 3 H 0.117 0.883 4 C 0.006 3.994 5 N -0.382 5.382 6 C 0.426 3.574 7 O -0.463 6.463 8 N -0.393 5.393 9 C 0.011 3.989 10 C -0.159 4.159 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.008 4.008 21 C -0.119 4.119 22 H 0.137 0.863 23 C 0.339 3.661 24 O -0.396 6.396 25 O -0.326 6.326 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -19.110 17.889 -7.444 27.214 hybrid contribution -0.137 -0.945 -1.589 1.854 sum -19.247 16.944 -9.033 27.187 Atomic orbital electron populations 1.22060 0.93544 1.03049 1.02938 1.22082 0.96756 0.99979 0.92054 0.88301 1.21943 0.94499 0.87792 0.95200 1.47780 1.35439 1.37885 1.17133 1.15407 0.78288 0.79873 0.83808 1.90937 1.68695 1.68272 1.18419 1.45428 1.37235 1.36148 1.20499 1.21553 0.86654 0.94606 0.96044 1.21897 0.99928 0.95623 0.98407 1.19019 0.91619 0.94927 0.95739 1.21169 1.16130 1.17012 1.01836 0.92704 1.25028 0.96756 0.97522 0.95135 1.69961 1.25183 1.40197 1.17947 0.86641 0.78616 0.81988 0.80636 1.20254 1.21271 1.20247 1.22277 1.00864 0.94143 0.83550 1.22109 0.97619 0.99765 0.92388 0.86291 1.22881 0.82962 0.79605 0.80695 1.90752 1.44606 1.32680 1.71609 1.84540 1.58832 1.46114 1.43147 0.91033 0.92134 0.91466 0.91138 0.89786 0.77284 0.91827 0.91810 0.92732 0.92777 0.96223 0.96212 0.92864 0.89595 0.89059 0.72938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 7.89 37.16 0.29 -0.65 16 2 C -0.09 -0.58 3.52 -89.24 -0.31 -0.89 16 3 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 1.20 6.62 -2.98 -0.02 1.18 16 5 N -0.64 -7.51 3.29 -175.70 -0.58 -8.08 16 6 C 0.72 11.49 8.54 -86.93 -0.74 10.75 16 7 O -0.59 -11.69 16.68 5.29 0.09 -11.60 16 8 N -0.74 -11.14 5.53 -65.23 -0.36 -11.50 16 9 C 0.13 2.42 5.67 -4.04 -0.02 2.40 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.12 1.03 6.17 -2.32 -0.01 1.02 16 21 C -0.10 -0.70 3.49 -90.08 -0.31 -1.01 16 22 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 23 C 0.50 3.68 5.53 36.01 0.20 3.88 16 24 O -0.51 -5.18 15.95 -18.75 -0.30 -5.48 16 25 O -0.51 -2.69 13.41 -39.24 -0.53 -3.21 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 28 H 0.07 0.50 7.45 -51.93 -0.39 0.11 16 29 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 30 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.39 4.89 6.81 -40.82 -0.28 4.61 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.09 0.69 6.83 -51.93 -0.35 0.34 16 40 H 0.09 0.86 7.23 -51.93 -0.38 0.49 16 41 H 0.41 0.54 9.10 45.56 0.41 0.96 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -35.35 341.25 -7.98 -43.33 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.53 Total: -0.15 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.63 Total: 1.20 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.20 Total: -45.77 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.74 Total: -20.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.35 -7.98 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.304 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds