Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.28776 * 2 1 4 4 C 1.54005 * 110.32643 * 122.13818 * 2 1 3 5 5 N 1.47485 * 107.08612 * 120.30316 * 4 2 1 6 6 C 1.34769 * 127.03606 * 154.51938 * 5 4 2 7 7 O 1.21590 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00506 * 179.72041 * 8 6 5 10 10 C 1.53000 * 109.47500 * 180.27418 * 9 8 6 11 11 C 1.53000 * 109.47287 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46917 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00369 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47205 * 60.00335 * 16 14 12 18 18 H 1.48503 * 109.47193 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47260 * 300.00118 * 16 14 12 20 20 C 1.48115 * 105.92748 * 334.77613 * 5 4 2 21 21 C 1.54590 * 103.42772 * 39.02706 * 20 5 4 22 22 H 1.09002 * 110.57328 * 81.16586 * 21 20 5 23 23 C 1.50701 * 110.83650 * 204.44122 * 21 20 5 24 24 O 1.20823 * 119.99933 * 17.89990 * 23 21 20 25 25 O 1.34224 * 120.00206 * 197.89000 * 23 21 20 26 26 H 1.08993 * 109.47447 * 293.90901 * 1 2 3 27 27 H 1.09000 * 109.47228 * 53.91254 * 1 2 3 28 28 H 1.09007 * 109.47160 * 173.91194 * 1 2 3 29 29 H 1.09000 * 109.91238 * 0.93849 * 4 2 1 30 30 H 1.09005 * 109.91022 * 239.65996 * 4 2 1 31 31 H 0.97006 * 119.99321 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.47482 * 300.27556 * 9 8 6 33 33 H 1.09005 * 109.46807 * 60.27614 * 9 8 6 34 34 H 1.09003 * 109.46866 * 300.00515 * 10 9 8 35 35 H 1.08997 * 109.47169 * 60.00008 * 10 9 8 36 36 H 1.08998 * 109.47219 * 299.99546 * 11 10 9 37 37 H 1.08997 * 109.47170 * 59.99812 * 11 10 9 38 38 H 0.97007 * 119.99802 * 179.97438 * 15 14 12 39 39 H 1.09001 * 110.65794 * 157.51392 * 20 5 4 40 40 H 1.09003 * 110.66536 * 280.61850 * 20 5 4 41 41 H 0.96698 * 117.00048 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8825 -1.8836 0.7102 6 6 3.8946 -2.5069 1.3453 7 8 4.2170 -2.1578 2.4645 8 7 4.5496 -3.5174 0.7399 9 6 5.6537 -4.1909 1.4278 10 6 6.2243 -5.2868 0.5253 11 6 7.3771 -5.9906 1.2440 12 6 7.9385 -7.0704 0.3552 13 1 7.5158 -7.2376 -0.6244 14 6 8.9927 -7.8441 0.7923 15 7 9.5079 -7.6402 1.9851 16 14 9.6891 -9.1821 -0.3096 17 1 10.1879 -8.5756 -1.5700 18 1 10.8080 -9.8654 0.3880 19 1 8.6250 -10.1694 -0.6226 20 6 2.3677 -2.1742 -0.6478 21 6 2.0693 -0.7720 -1.2263 22 1 2.9825 -0.3104 -1.6020 23 6 1.0245 -0.8503 -2.3095 24 8 0.3175 -1.8261 -2.3975 25 8 0.8790 0.1642 -3.1763 26 1 -0.3634 0.4165 0.9394 27 1 -0.3634 0.6053 -0.8305 28 1 -0.3634 -1.0219 -0.1090 29 1 1.2330 -1.1570 1.8101 30 1 2.6794 -0.1088 1.8359 31 1 4.2921 -3.7962 -0.1528 32 1 6.4349 -3.4662 1.6575 33 1 5.2877 -4.6362 2.3530 34 1 5.4431 -6.0115 0.2956 35 1 6.5902 -4.8416 -0.3999 36 1 8.1583 -5.2661 1.4739 37 1 7.0107 -6.4359 2.1690 38 1 10.2493 -8.1849 2.2928 39 1 3.1244 -2.6828 -1.2452 40 1 1.4553 -2.7682 -0.5944 41 1 0.1954 0.0685 -3.8534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828353960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = -157.866620 kcal Electronic energy + Delta-G solvation = -22201.364077 eV Core-core repulsion = 18693.706684 eV Total energy + Delta-G solvation = -3507.657393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01209 -40.91746 -38.87366 -37.07210 -36.91197 -35.23586 -34.13525 -32.73736 -31.15580 -28.86046 -27.21485 -26.06986 -24.74176 -23.09300 -22.30721 -21.04675 -20.77297 -19.24391 -19.00290 -18.46325 -17.87961 -17.24580 -16.85590 -16.63779 -16.44881 -16.03124 -15.74181 -15.26001 -14.91466 -14.61979 -14.25468 -13.88619 -13.79191 -13.73521 -13.67329 -13.41270 -13.32037 -12.71188 -12.55062 -12.51665 -12.39527 -12.27285 -12.00180 -11.84362 -11.68050 -11.66930 -11.44300 -11.32736 -11.16602 -10.53882 -10.32274 -9.65130 -8.18574 -6.30140 1.15960 1.39731 1.42785 1.45322 1.53226 1.97425 2.13220 2.42651 2.97292 3.15108 3.24936 3.35125 3.79332 4.01911 4.14465 4.18355 4.22878 4.34079 4.42026 4.50169 4.55683 4.59764 4.73533 4.80182 4.90816 4.95827 4.96030 5.05530 5.13702 5.18616 5.30392 5.43916 5.53514 5.62205 5.71853 5.84990 5.94279 6.23298 6.85263 6.88906 7.00392 7.39317 7.46572 8.93407 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026418 B = 0.002787 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.624901 B =10044.562791 C =10892.975446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.078 4.078 3 H 0.120 0.880 4 C 0.123 3.877 5 N -0.638 5.638 6 C 0.721 3.279 7 O -0.633 6.633 8 N -0.729 5.729 9 C 0.149 3.851 10 C -0.101 4.101 11 C 0.025 3.975 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.112 3.888 21 C -0.095 4.095 22 H 0.134 0.866 23 C 0.507 3.493 24 O -0.540 6.540 25 O -0.508 6.508 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.408 0.592 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.069 0.931 36 H -0.006 1.006 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 18.673 -11.281 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.097 4.097 3 H 0.138 0.862 4 C 0.000 4.000 5 N -0.376 5.376 6 C 0.422 3.578 7 O -0.514 6.514 8 N -0.385 5.385 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.013 4.013 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.011 4.011 21 C -0.115 4.115 22 H 0.152 0.848 23 C 0.349 3.651 24 O -0.430 6.430 25 O -0.322 6.322 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -20.238 18.586 -10.023 29.249 hybrid contribution 0.125 -1.079 -0.819 1.360 sum -20.114 17.507 -10.842 28.785 Atomic orbital electron populations 1.22030 0.92955 1.02317 1.03916 1.22053 0.97052 1.00386 0.90186 0.86179 1.22166 0.94000 0.87210 0.96659 1.47731 1.34100 1.37610 1.18149 1.15513 0.78943 0.79910 0.83389 1.90902 1.70328 1.69619 1.20586 1.45086 1.36461 1.35951 1.20970 1.21124 0.87157 0.93899 0.95318 1.21594 0.98111 0.95850 0.98298 1.18928 0.92906 0.94387 0.95093 1.21657 1.16339 1.17482 1.02540 0.91533 1.26023 0.97244 1.00207 0.96599 1.70111 1.25855 1.41567 1.20013 0.85472 0.77898 0.78780 0.78713 1.18959 1.21169 1.19088 1.22418 1.00856 0.95704 0.82151 1.22074 0.98395 0.98453 0.92614 0.84759 1.22767 0.82284 0.79350 0.80660 1.90755 1.45796 1.33979 1.72511 1.84495 1.59494 1.44958 1.43241 0.90019 0.91198 0.93043 0.91016 0.90628 0.75482 0.93124 0.93411 0.91523 0.91268 0.98789 0.98940 0.92798 0.88537 0.89433 0.70811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.89 71.98 0.57 -0.93 16 2 C -0.08 -0.83 3.52 -9.90 -0.03 -0.86 16 3 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.12 2.14 6.62 86.53 0.57 2.72 16 5 N -0.64 -14.31 3.29 -828.05 -2.73 -17.03 16 6 C 0.72 22.75 8.54 179.06 1.53 24.28 16 7 O -0.63 -25.81 16.68 -4.00 -0.07 -25.88 16 8 N -0.73 -21.52 5.53 -478.55 -2.64 -24.16 16 9 C 0.15 5.45 5.67 86.38 0.49 5.94 16 10 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 15 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 16 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.11 1.80 6.17 86.61 0.53 2.33 16 21 C -0.10 -1.11 3.49 -10.45 -0.04 -1.15 16 22 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 23 C 0.51 6.26 5.53 71.24 0.39 6.65 16 24 O -0.54 -10.08 15.95 21.97 0.35 -9.73 16 25 O -0.51 -3.74 13.41 -51.35 -0.69 -4.43 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.57 7.50 -2.39 -0.02 0.55 16 28 H 0.05 0.68 7.45 -2.38 -0.02 0.67 16 29 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 30 H 0.08 1.47 8.05 -2.38 -0.02 1.45 16 31 H 0.41 9.47 6.81 -92.70 -0.63 8.84 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 39 H 0.10 1.34 6.83 -2.39 -0.02 1.33 16 40 H 0.09 1.54 7.23 -2.39 -0.02 1.52 16 41 H 0.43 -0.14 9.10 -74.06 -0.67 -0.81 16 Total: -1.00 -77.42 341.25 1.30 -76.13 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -0.26 Total: 9.53 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.02 Total: 6.80 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -5.09 Total: -98.34 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.41 Total: -40.05 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.42 1.30 -76.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.741 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds