Wall clock time and date at job start Tue Mar 31 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.64202 * 2 1 4 4 C 1.54318 * 110.71741 * 236.85388 * 2 1 3 5 5 N 1.47025 * 107.27582 * 263.83333 * 4 2 1 6 6 C 1.34774 * 125.65208 * 181.02572 * 5 4 2 7 7 O 1.21595 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00189 * 179.72572 * 6 5 4 9 9 C 1.46497 * 120.00057 * 180.27880 * 8 6 5 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46933 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.47152 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99710 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99995 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99956 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47254 * 59.99872 * 16 14 12 18 18 H 1.48501 * 109.47262 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47128 * 299.99986 * 16 14 12 20 20 C 1.47428 * 108.69678 * 1.28631 * 5 4 2 21 21 C 1.55127 * 104.72741 * 335.55607 * 20 5 4 22 22 H 1.09001 * 111.18964 * 279.19385 * 21 20 5 23 23 C 1.50688 * 110.94067 * 155.28779 * 21 20 5 24 24 O 1.20825 * 120.00218 * 218.02549 * 23 21 20 25 25 O 1.34229 * 120.00279 * 38.03189 * 23 21 20 26 26 H 1.08997 * 109.47626 * 190.73914 * 1 2 3 27 27 H 1.09005 * 109.46904 * 310.73888 * 1 2 3 28 28 H 1.09001 * 109.47176 * 70.73313 * 1 2 3 29 29 H 1.09008 * 109.88002 * 144.41580 * 4 2 1 30 30 H 1.09001 * 110.01478 * 23.32190 * 4 2 1 31 31 H 0.96998 * 119.99611 * 0.26816 * 8 6 5 32 32 H 1.09002 * 109.46649 * 299.99180 * 9 8 6 33 33 H 1.08993 * 109.47864 * 59.99458 * 9 8 6 34 34 H 1.09002 * 109.46911 * 299.99164 * 10 9 8 35 35 H 1.09002 * 109.47576 * 59.99648 * 10 9 8 36 36 H 1.08996 * 109.47477 * 300.00109 * 11 10 9 37 37 H 1.09007 * 109.47000 * 60.00164 * 11 10 9 38 38 H 0.96997 * 120.00241 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36213 * 94.48785 * 20 5 4 40 40 H 1.08997 * 110.36515 * 216.80495 * 20 5 4 41 41 H 0.96696 * 117.00435 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 -1.2085 5 7 2.3715 -2.1520 -0.7426 6 6 2.8848 -3.1454 -1.4950 7 8 3.1440 -2.9489 -2.6666 8 7 3.1165 -4.3548 -0.9472 9 6 3.6801 -5.4328 -1.7635 10 6 3.8428 -6.6898 -0.9065 11 6 4.4309 -7.8158 -1.7592 12 6 4.5918 -9.0537 -0.9148 13 1 4.3038 -9.0387 0.1259 14 6 5.1076 -10.2052 -1.4708 15 7 5.4588 -10.2234 -2.7381 16 14 5.3063 -11.7398 -0.4245 17 1 3.9808 -12.1569 0.0992 18 1 5.8772 -12.8327 -1.2520 19 1 6.2183 -11.4500 0.7111 20 6 2.0073 -2.2536 0.6824 21 6 2.0789 -0.7975 1.2125 22 1 3.1060 -0.5098 1.4366 23 6 1.1954 -0.6201 2.4203 24 8 0.5754 0.4061 2.5698 25 8 1.0974 -1.6020 3.3303 26 1 -0.3634 -1.0096 0.1915 27 1 -0.3633 0.6707 0.7787 28 1 -0.3633 0.3391 -0.9701 29 1 2.9869 -0.3181 -1.5780 30 1 1.3282 -0.8224 -2.0010 31 1 2.9101 -4.5114 -0.0125 32 1 3.0108 -5.6452 -2.5972 33 1 4.6532 -5.1270 -2.1477 34 1 4.5124 -6.4771 -0.0731 35 1 2.8699 -6.9959 -0.5219 36 1 3.7612 -8.0284 -2.5924 37 1 5.4039 -7.5099 -2.1439 38 1 5.8220 -11.0333 -3.1291 39 1 0.9973 -2.6493 0.7884 40 1 2.7206 -2.8852 1.2120 41 1 0.5182 -1.4423 4.0879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828353961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:52 Heat of formation + Delta-G solvation = -131.688532 kcal Electronic energy + Delta-G solvation = -22251.172622 eV Core-core repulsion = 18744.650396 eV Total energy + Delta-G solvation = -3506.522226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29650 -39.96680 -37.99338 -36.57742 -35.36382 -33.47439 -32.81739 -31.02032 -30.54579 -27.39574 -26.25988 -24.89857 -23.15943 -22.42483 -20.62971 -20.19581 -19.72804 -18.40085 -18.08628 -17.28007 -16.56945 -16.36413 -15.99041 -15.48393 -15.06423 -14.48825 -14.34350 -14.08440 -13.94186 -13.74478 -13.30518 -13.05806 -12.96876 -12.59490 -12.27336 -11.95724 -11.80039 -11.70667 -11.60803 -11.39325 -11.24529 -10.88298 -10.79824 -10.70924 -10.61796 -10.13085 -9.85554 -9.44374 -9.13438 -9.01141 -8.53692 -8.36524 -6.01269 -4.04500 1.69971 2.39286 2.69787 3.28466 3.32184 3.37043 3.38820 3.65209 3.96237 4.14567 4.36172 4.44798 4.65677 4.75443 4.91026 4.99314 5.13199 5.33649 5.34381 5.36505 5.50625 5.59162 5.66879 5.69629 5.81355 5.83872 6.03787 6.11468 6.18450 6.51512 6.62239 6.81418 7.01203 7.04644 7.42230 7.64063 7.77125 7.97511 8.02901 8.38315 8.68791 9.02017 9.59571 11.10016 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.002843 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.552518 B = 9847.148259 C =10771.041757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.083 4.083 3 H 0.102 0.898 4 C 0.130 3.870 5 N -0.642 5.642 6 C 0.720 3.280 7 O -0.586 6.586 8 N -0.739 5.739 9 C 0.134 3.866 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.114 3.886 21 C -0.094 4.094 22 H 0.130 0.870 23 C 0.495 3.505 24 O -0.507 6.507 25 O -0.512 6.512 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 21.568 11.054 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.102 4.102 3 H 0.120 0.880 4 C 0.007 3.993 5 N -0.382 5.382 6 C 0.422 3.578 7 O -0.464 6.464 8 N -0.393 5.393 9 C 0.011 3.989 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.010 4.010 21 C -0.114 4.114 22 H 0.147 0.853 23 C 0.336 3.664 24 O -0.395 6.395 25 O -0.324 6.324 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -9.166 21.698 9.648 25.454 hybrid contribution -0.308 -0.898 1.570 1.834 sum -9.474 20.801 11.217 25.461 Atomic orbital electron populations 1.22100 0.93360 1.02616 1.03462 1.22167 0.97293 0.99468 0.91314 0.87986 1.21895 1.00810 0.80682 0.95938 1.47529 1.68535 1.11765 1.10360 1.15479 0.78249 0.79887 0.84212 1.90938 1.58771 1.81879 1.14772 1.45426 1.68659 1.10641 1.14581 1.21545 0.98134 0.85291 0.93913 1.21893 1.00902 0.94053 0.98972 1.19023 0.96179 0.91222 0.94899 1.21170 1.42259 0.96072 0.96646 0.92695 1.25027 0.95508 0.98931 0.94979 1.69954 1.43072 1.28406 1.11853 0.86641 0.78398 0.82618 0.80223 1.20252 1.21282 1.20248 1.22173 1.01835 0.94851 0.82140 1.22330 1.00128 0.98385 0.90542 0.85267 1.22924 0.79745 0.80539 0.83167 1.90705 1.43699 1.29085 1.75974 1.84559 1.66106 1.46092 1.35632 0.92807 0.90101 0.91658 0.90958 0.90806 0.77268 0.91859 0.91849 0.92750 0.92758 0.96230 0.96232 0.92860 0.90677 0.89460 0.72813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.10 37.16 0.30 -0.85 16 2 C -0.08 -0.58 3.25 -88.79 -0.29 -0.87 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.13 1.22 6.44 -3.07 -0.02 1.20 16 5 N -0.64 -7.26 3.33 -176.10 -0.59 -7.84 16 6 C 0.72 11.25 8.49 -86.92 -0.74 10.51 16 7 O -0.59 -11.66 16.67 5.28 0.09 -11.57 16 8 N -0.74 -10.90 5.52 -65.23 -0.36 -11.26 16 9 C 0.13 2.39 5.67 -4.04 -0.02 2.37 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.11 0.91 5.37 -2.41 -0.01 0.90 16 21 C -0.09 -0.62 3.44 -89.51 -0.31 -0.93 16 22 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 23 C 0.49 3.50 6.93 36.00 0.25 3.75 16 24 O -0.51 -4.82 14.93 -18.75 -0.28 -5.10 16 25 O -0.51 -2.70 12.98 -39.25 -0.51 -3.21 16 26 H 0.05 0.42 7.21 -51.93 -0.37 0.04 16 27 H 0.08 0.66 6.04 -51.93 -0.31 0.35 16 28 H 0.06 0.43 8.03 -51.93 -0.42 0.02 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.74 7.77 -51.93 -0.40 0.33 16 31 H 0.39 4.72 6.94 -40.82 -0.28 4.44 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 0.58 7.49 -51.93 -0.39 0.19 16 40 H 0.09 0.63 7.28 -51.93 -0.38 0.25 16 41 H 0.41 0.59 9.10 45.56 0.41 1.00 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -35.20 339.28 -7.84 -43.04 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.49 Total: -0.23 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.53 Total: 0.74 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.21 Total: -45.17 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.70 Total: -19.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.20 -7.84 -43.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.649 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds