Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.64202 * 2 1 4 4 C 1.54318 * 110.71741 * 236.85388 * 2 1 3 5 5 N 1.47025 * 107.27582 * 263.83333 * 4 2 1 6 6 C 1.34774 * 125.65208 * 181.02572 * 5 4 2 7 7 O 1.21595 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00189 * 179.72572 * 6 5 4 9 9 C 1.46497 * 120.00057 * 180.27880 * 8 6 5 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46933 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.47152 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99710 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99995 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99956 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47254 * 59.99872 * 16 14 12 18 18 H 1.48501 * 109.47262 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47128 * 299.99986 * 16 14 12 20 20 C 1.47428 * 108.69678 * 1.28631 * 5 4 2 21 21 C 1.55127 * 104.72741 * 335.55607 * 20 5 4 22 22 H 1.09001 * 111.18964 * 279.19385 * 21 20 5 23 23 C 1.50688 * 110.94067 * 155.28779 * 21 20 5 24 24 O 1.20825 * 120.00218 * 218.02549 * 23 21 20 25 25 O 1.34229 * 120.00279 * 38.03189 * 23 21 20 26 26 H 1.08997 * 109.47626 * 190.73914 * 1 2 3 27 27 H 1.09005 * 109.46904 * 310.73888 * 1 2 3 28 28 H 1.09001 * 109.47176 * 70.73313 * 1 2 3 29 29 H 1.09008 * 109.88002 * 144.41580 * 4 2 1 30 30 H 1.09001 * 110.01478 * 23.32190 * 4 2 1 31 31 H 0.96998 * 119.99611 * 0.26816 * 8 6 5 32 32 H 1.09002 * 109.46649 * 299.99180 * 9 8 6 33 33 H 1.08993 * 109.47864 * 59.99458 * 9 8 6 34 34 H 1.09002 * 109.46911 * 299.99164 * 10 9 8 35 35 H 1.09002 * 109.47576 * 59.99648 * 10 9 8 36 36 H 1.08996 * 109.47477 * 300.00109 * 11 10 9 37 37 H 1.09007 * 109.47000 * 60.00164 * 11 10 9 38 38 H 0.96997 * 120.00241 * 179.97438 * 15 14 12 39 39 H 1.08997 * 110.36213 * 94.48785 * 20 5 4 40 40 H 1.08997 * 110.36515 * 216.80495 * 20 5 4 41 41 H 0.96696 * 117.00435 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 -1.2085 5 7 2.3715 -2.1520 -0.7426 6 6 2.8848 -3.1454 -1.4950 7 8 3.1440 -2.9489 -2.6666 8 7 3.1165 -4.3548 -0.9472 9 6 3.6801 -5.4328 -1.7635 10 6 3.8428 -6.6898 -0.9065 11 6 4.4309 -7.8158 -1.7592 12 6 4.5918 -9.0537 -0.9148 13 1 4.3038 -9.0387 0.1259 14 6 5.1076 -10.2052 -1.4708 15 7 5.4588 -10.2234 -2.7381 16 14 5.3063 -11.7398 -0.4245 17 1 3.9808 -12.1569 0.0992 18 1 5.8772 -12.8327 -1.2520 19 1 6.2183 -11.4500 0.7111 20 6 2.0073 -2.2536 0.6824 21 6 2.0789 -0.7975 1.2125 22 1 3.1060 -0.5098 1.4366 23 6 1.1954 -0.6201 2.4203 24 8 0.5754 0.4061 2.5698 25 8 1.0974 -1.6020 3.3303 26 1 -0.3634 -1.0096 0.1915 27 1 -0.3633 0.6707 0.7787 28 1 -0.3633 0.3391 -0.9701 29 1 2.9869 -0.3181 -1.5780 30 1 1.3282 -0.8224 -2.0010 31 1 2.9101 -4.5114 -0.0125 32 1 3.0108 -5.6452 -2.5972 33 1 4.6532 -5.1270 -2.1477 34 1 4.5124 -6.4771 -0.0731 35 1 2.8699 -6.9959 -0.5219 36 1 3.7612 -8.0284 -2.5924 37 1 5.4039 -7.5099 -2.1439 38 1 5.8220 -11.0333 -3.1291 39 1 0.9973 -2.6493 0.7884 40 1 2.7206 -2.8852 1.2120 41 1 0.5182 -1.4423 4.0879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828353961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -156.898819 kcal Electronic energy + Delta-G solvation = -22252.265822 eV Core-core repulsion = 18744.650396 eV Total energy + Delta-G solvation = -3507.615426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97318 -40.92247 -38.87481 -37.11137 -36.91139 -35.21371 -33.96513 -32.66197 -31.20159 -28.81359 -27.39296 -25.82219 -24.68078 -23.23245 -22.28338 -21.06427 -20.63379 -19.19648 -18.88538 -18.44308 -17.90017 -17.38894 -16.94679 -16.63995 -16.40216 -16.15114 -15.52551 -15.18238 -14.76530 -14.53137 -14.24646 -14.13585 -13.89632 -13.68383 -13.62090 -13.40657 -13.19642 -12.69989 -12.56231 -12.52857 -12.38229 -12.24690 -11.95609 -11.82899 -11.65395 -11.64730 -11.37917 -11.28228 -11.14172 -10.52761 -10.27438 -9.57322 -8.17420 -6.28959 1.16311 1.43108 1.46372 1.49745 1.54397 2.04073 2.12148 2.43684 2.94070 3.14297 3.16362 3.40647 3.82327 4.03567 4.13280 4.17588 4.24926 4.43007 4.44206 4.53116 4.57788 4.66363 4.78084 4.81485 4.96904 4.97759 4.98326 5.07978 5.18166 5.24813 5.29636 5.46314 5.55403 5.68091 5.73438 5.86358 5.95967 6.24483 6.87575 6.92237 7.01527 7.40570 7.49788 8.94587 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.002843 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.552518 B = 9847.148259 C =10771.041757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.074 4.074 3 H 0.119 0.881 4 C 0.126 3.874 5 N -0.636 5.636 6 C 0.716 3.284 7 O -0.636 6.636 8 N -0.727 5.727 9 C 0.149 3.851 10 C -0.100 4.100 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.110 3.890 21 C -0.089 4.089 22 H 0.148 0.852 23 C 0.503 3.497 24 O -0.533 6.533 25 O -0.509 6.509 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.410 0.590 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.068 0.932 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 21.875 13.781 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.093 4.093 3 H 0.137 0.863 4 C 0.003 3.997 5 N -0.374 5.374 6 C 0.418 3.582 7 O -0.517 6.517 8 N -0.383 5.383 9 C 0.025 3.975 10 C -0.138 4.138 11 C -0.014 4.014 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.013 4.013 21 C -0.108 4.108 22 H 0.165 0.835 23 C 0.345 3.655 24 O -0.423 6.423 25 O -0.323 6.323 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -9.715 22.031 12.466 27.113 hybrid contribution -0.185 -0.950 0.734 1.215 sum -9.901 21.081 13.200 26.771 Atomic orbital electron populations 1.22050 0.93575 1.02093 1.03434 1.22117 0.96954 0.99925 0.90261 0.86291 1.22045 1.00688 0.79947 0.97007 1.47482 1.66914 1.11403 1.11589 1.15601 0.78275 0.80496 0.83867 1.90904 1.60876 1.82793 1.17133 1.45060 1.68415 1.09836 1.15014 1.21110 0.97243 0.85645 0.93543 1.21588 1.01387 0.92526 0.98275 1.18937 0.94571 0.93034 0.94834 1.21665 1.41846 0.96949 0.97456 0.91417 1.26026 0.95131 1.02741 0.96225 1.70108 1.44173 1.29432 1.13910 0.85470 0.78920 0.77996 0.78470 1.19010 1.21293 1.18947 1.22393 1.02572 0.96282 0.80053 1.22322 1.01124 0.97083 0.90280 0.83488 1.22838 0.79075 0.80275 0.83272 1.90711 1.44753 1.30191 1.76667 1.84518 1.66427 1.45279 1.36100 0.93354 0.90697 0.91302 0.91064 0.91657 0.75320 0.93495 0.93324 0.91212 0.91365 0.98983 0.98910 0.92834 0.89976 0.88085 0.70794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.10 71.98 0.58 -1.43 16 2 C -0.07 -0.87 3.25 -9.61 -0.03 -0.90 16 3 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.13 2.22 6.44 86.73 0.56 2.78 16 5 N -0.64 -13.49 3.33 -829.30 -2.76 -16.25 16 6 C 0.72 21.99 8.49 179.06 1.52 23.51 16 7 O -0.64 -25.74 16.67 -4.01 -0.07 -25.80 16 8 N -0.73 -20.65 5.52 -478.55 -2.64 -23.29 16 9 C 0.15 5.33 5.67 86.38 0.49 5.83 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.02 1.24 4.97 29.85 0.15 1.39 16 12 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 16 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 C 0.11 1.47 5.37 86.93 0.47 1.93 16 21 C -0.09 -0.93 3.44 -10.07 -0.03 -0.97 16 22 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 23 C 0.50 5.82 6.93 71.23 0.49 6.32 16 24 O -0.53 -9.05 14.93 21.97 0.33 -8.73 16 25 O -0.51 -3.86 12.98 -51.40 -0.67 -4.53 16 26 H 0.05 0.67 7.21 -2.39 -0.02 0.66 16 27 H 0.07 1.12 6.04 -2.38 -0.01 1.11 16 28 H 0.07 0.84 8.03 -2.39 -0.02 0.82 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 31 H 0.41 8.84 6.94 -92.71 -0.64 8.19 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.08 1.04 7.49 -2.39 -0.02 1.02 16 40 H 0.10 1.12 7.28 -2.39 -0.02 1.10 16 41 H 0.43 0.03 9.10 -74.06 -0.67 -0.65 16 Total: -1.00 -76.98 339.28 1.29 -75.69 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -0.27 Total: 8.98 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.05 Total: 5.32 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -5.11 Total: -96.43 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.41 Total: -39.06 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -76.98 1.29 -75.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828353961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.205 kcal (2) G-P(sol) polarization free energy of solvation -76.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds